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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042157 ID=TCONS_00042157|Name=TCONS_00042157|organism=Clytia hemisphaerica|type=transcript|length=665bp
tccagaaatgtgcgatgaatttttcaaaatgtgtgATTGTATTGACGTGC
CAGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCATTTTATGGA
ATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCCACCTGGGA
TGCAGAAGCTGTCAAACTTGCATGTAAAAATGCTGAATGCAGTGAGAAAA
GTCTTCAAAATGCTATAACACAAATTGAAGCTGAAATCAATATTCTACAA
TCATTTCTTGACGATGTCACCAGCTCAATAGAACTCACACGAAAAGTCAT
CAGTTGTAAAGCCAATGTTTGGGGCAGGAGGGGTGATCTGTTCGACCATT
ATGAATCTCTATTCAAAAGGAAAGTCATAGTTCGACAAGTGTACCAGGAT
TTGGAAATCAAGAAAACGATTTTGGAGAAAGAAAAGTTGCGATGTGCCGA
TAGAAGTTGGCTGCGTGAAGTCCTGGAGGATGGAACAAGGAATTTTCTTG
GATAACGGTTAAAACCTGGTGTTTCACAATGAAGTTTTCACCGTAGAACG
CTGAATATATGTGCCTTGAGCTCATCTaagagaccaatttgattagttgt
tttacgaatccgaccgaccctgaaattcccaaaatgtaaataaaaataaa
atttagtttagtagt Run BLAST on NCBI protein sequence of TCONS_00042157-protein >TCONS_00042157-protein ID=TCONS_00042157-protein|Name=TCONS_00042157-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
PEMCDEFFKMCDCIDVPVIYDMSILTTNSSFYGINDTAVNSSLDAISTWD
AEAVKLACKNAECSEKSLQNAITQIEAEINILQSFLDDVTSSIELTRKVI
SCKANVWGRRGDLFDHYESLFKRKVIVRQVYQDLEIKKTILEKEKLRCAD
RSWLREVLEDGTRNFLG Run BLAST on NCBI transcript from alignment at sc0003242:3917..6122+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042157 ID=TCONS_00042157|Name=TCONS_00042157|organism=Clytia hemisphaerica|type=transcript|length=2206bp|location=Sequence derived from alignment at sc0003242:3917..6122+ (Clytia hemisphaerica)
tccagaaatgtgcgatgaatttttcaaaatgtgtgATTGTATTGACGTGC
CAGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCATTTTATGGA
ATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCCACCTGGGA
TGCAGAAGCTGTCAAACTTGCATGTAAAAGTAAGTGAATTGTCCTTTTCA
ACATAGTAAGATGATTAAGAACACGTTAATACGCGACGGTTATGTTGCAC
TCCGAAACGAAATAAAGCCATTTTTACtggacaaaacattttttacgtaa
cttctaaccaatagaatcgcttcatttcgtttcgaaGCGAAACGGAACCA
TTACGTGCGAACTTGGTCTTTAACATTGAAAATGACTATTCTCTCAAAAT
GCATGAAAAATCATTTCAACTTTAGCCATCTGACATCCTCTTTTGGTGTA
CTCCTGTATTTGTAGAGGCCTGGGACTCAGTATCTTGTGTTTTCAAAGTA
TCGTTACCAAAATACTGAAGTCTAGACataattacaagttttttttataa
gaacaagttaataacaacattttaagactttacgGACAataaacacccaa
tttcttagaaatgaaataaagaacatttcaataatattttcaggtataaa
aatcaaaatattaagaacatatATAAAGCTTTAAGAATTCTGGATGTTTT
CATAAATGAgtagataaaaaacaaaggaatgaAAAAATAGCTATTGATCG
TCTCTGCTTTTTTCTAATAAACATTTCTAGATGCTGAATGCAGTGAGACA
AGTCTTCAAAATGCTATAACACAAATTGNGCTTTTTTTCTAATAAATGTT
TCTAGATGCTGAATGCAGTGAGAAAAGTCTTCAAAATGCTATAACACAAA
TTGAAGCTGAAATCAATATTCTACAATCATTTCTTGACGATGTCACCAGC
TCAATAGAACTCACACGAAAAGTCATCAGTTGTAAAGCCAATGTTTGGGG
CAGGAGGGGTGATCTGTTCGACCATTATGAATCTCTATTCAAAAGGAAAG
TCATAGTTCGACAAGTGTACCAGGATTTGGAAATCAAGAAAACGATTTTG
GAGAAAGAAAAGTTGCGATGTGCCGATAGAAGTAAGTACAAAGTCATGAT
TATTTTGACGTAATGTTTAATACGGAAGCAACCCACAATAGCCTGGGAGT
TTGCCACTAgaagttttattgtttaaattcaatatTAGTGACGTGGCAAC
CCGGGGGGGGACACTCGATTTCGAAatgacggtatgtgccgcgcaaaatc
tgcttttcaaaatcgtacccttacagtgcagttcaatatcgCAGAAAAGg
caccctttcagtgcatttctcttgatttacccaacccttatagtgcacta
tatttctcaactgtaaatctgcgtgtaagaagaagcttgggaaattttct
gtttcaaagaaaaactgagaaaactATTCTTGTCAGCAGTAATTATCAgt
caatagaaactttttcaaacaaacgaaaagtaaaaacctttctttttaac
aattcatacagtgcattttgggatgctgaaaaaccctacccttaagcgcg
gcacatgacgtatgctagatcatatgagtgcccccccccccggcgtGGTA
AACACTTGGCCCTTTTGGGGTGCTttcgtataaaacattacgtcatgaat
atgaTGAATAGATTTGCATAATCTATTTCACGATTCTTAACCAGTGGAAA
TGAAATGAACAAAACAAGATTGGTTTGGTTAAATTTTGTTGTATACTACA
GCTTAAACACAAAGGTCAGATTGGAGGTTCGAGCTCAGTGCATATTTTTA
AATAGGGATGAAAAAACGCTTTGCACTCACAGTTACGCTAAATACTttaa
tttttgctatttttactGCTATTTTACTGTGTTATAAAACAAAAATCCCA
TTTTGAGtttacaaaatcttttttattttttttgatattcTAATAGGTTG
GCTGCGTGAAGTCCTGGAGGATGGAACAAGGAATTTTCTTGGATAACGGT
TAAAACCTGGTGTTTCACAATGAAGTTTTCACCGTAGAACGCTGAATATA
TGTGCCTTGAGCTCATCTaagagaccaatttgattagttgttttacgaat
ccgaccgaccctgaaattcccaaaatgtaaataaaaataaaatttagttt
agtagt Coding sequence (CDS) from alignment at sc0003242:3917..6122+ >TCONS_00042157 ID=TCONS_00042157|Name=TCONS_00042157|organism=Clytia hemisphaerica|type=CDS|length=1512bp|location=Sequence derived from alignment at sc0003242:3917..6122+ (Clytia hemisphaerica)
ccagaaatgtgcgatgaatttttcaaaatgtgtgATTGTATTGACGTGCC
AGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCATTTTATGGAA
TCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCCACCTGGGAT
GCAGAAGCTGTCAAACTTGCATGTAAAAATGCTGAATGCAGTGAGAAAAG
TCTTCAAAATGCTATAACACAAATTGAAGCTGAAATCAATATTCTACAAT
CATTTCTTGACGATGTCACCAGCTCAATAGAACTCACACGAAAAGTCATC
AGTTGTAAAGCCAATGTTTGGGGCAGGAGGGGTGATCTGTTCGACCATTA
TGAATCTCTATTCAAAAGGAAAGTCATAGTTCGACAAGTGTACCAGGATT
TGGAAATCAAGAAAACGATTTTGGAGAAAGAAAAGTTGCGATGTGCCGAT
AGAAGTTGGCTGCGTGAAGTCCTGGAGGATGGAACAAGGAATTTTCTTGG
ATAAccagaaatgtgcgatgaatttttcaaaatgtgtgATTGTATTGACG
TGCCAGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCATTTTAT
GGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCCACCTG
GGATGCAGAAGCTGTCAAACTTGCATGTAAAAATGCTGAATGCAGTGAGA
AAAGTCTTCAAAATGCTATAACACAAATTGAAGCTGAAATCAATATTCTA
CAATCATTTCTTGACGATGTCACCAGCTCAATAGAACTCACACGAAAAGT
CATCAGTTGTAAAGCCAATGTTTGGGGCAGGAGGGGTGATCTGTTCGACC
ATTATGAATCTCTATTCAAAAGGAAAGTCATAGTTCGACAAGTGTACCAG
GATTTGGAAATCAAGAAAACGATTTTGGAGAAAGAAAAGTTGCGATGTGC
CGATAGAAGTTGGCTGCGTGAAGTCCTGGAGGATGGAACAAGGAATTTTC
TTGGATAAccagaaatgtgcgatgaatttttcaaaatgtgtgATTGTATT
GACGTGCCAGTGATTTATGATATGAGCATCCTCACAACAAACTCTTCATT
TTATGGAATCAACGATACTGCGGTCAATTCTTCTCTTGATGCAATTTCCA
CCTGGGATGCAGAAGCTGTCAAACTTGCATGTAAAAATGCTGAATGCAGT
GAGAAAAGTCTTCAAAATGCTATAACACAAATTGAAGCTGAAATCAATAT
TCTACAATCATTTCTTGACGATGTCACCAGCTCAATAGAACTCACACGAA
AAGTCATCAGTTGTAAAGCCAATGTTTGGGGCAGGAGGGGTGATCTGTTC
GACCATTATGAATCTCTATTCAAAAGGAAAGTCATAGTTCGACAAGTGTA
CCAGGATTTGGAAATCAAGAAAACGATTTTGGAGAAAGAAAAGTTGCGAT
GTGCCGATAGAAGTTGGCTGCGTGAAGTCCTGGAGGATGGAACAAGGAAT
TTTCTTGGATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042157-exon-sc0003242-1491911889:3917..4095 | TCONS_00042157-exon-sc0003242-1491911889:3917..4095 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1510915933:3917..4095 | TCONS_00042157-exon-sc0003242-1510915933:3917..4095 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1575043694:3917..4095 | TCONS_00042157-exon-sc0003242-1575043694:3917..4095 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1491911889:4772..5047 | TCONS_00042157-exon-sc0003242-1491911889:4772..5047 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1510915933:4772..5047 | TCONS_00042157-exon-sc0003242-1510915933:4772..5047 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1575043694:4772..5047 | TCONS_00042157-exon-sc0003242-1575043694:4772..5047 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1491911889:5913..6122 | TCONS_00042157-exon-sc0003242-1491911889:5913..6122 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1510915933:5913..6122 | TCONS_00042157-exon-sc0003242-1510915933:5913..6122 | Clytia hemisphaerica | exon |
| TCONS_00042157-exon-sc0003242-1575043694:5913..6122 | TCONS_00042157-exon-sc0003242-1575043694:5913..6122 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003242 | supercontig | sc0003242:3917..6122 + |
Blast
The following BLAST results are available for this feature:
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