|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042150 ID=TCONS_00042150|Name=TCONS_00042150|organism=Clytia hemisphaerica|type=transcript|length=1799bp
gtACGAACAGCCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACG
TGTTTATGAAAGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTAC
GAGCGGGGGCTAAGATCATCACAGTTCACGGTCGACGTCGTGAACAACGA
GGCCCGCTCACCGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGA
GGCTGTTTCCGTGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGG
ACGTCGAAAAATGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCA
GAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGGCAACCGCCCGC
ATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCAATATCCCACCA
ATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGCAAAAGTGTGCT
ACCATGCGTGAAGATCTGGTCAGAGTTTCTTATCGAATTCGCTACTTCAT
CAATGCCAGGGATTGTAAAGATTGGTACAGCATTGGAGCGAGGGCGTCGG
GTGTTTACAAGGTGAACTGGATGGggcgttttttgaaaaatatcagatGC
AACATGGATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGATATCA
GCCTCGCCACTTAGATTTCCAACGCTCTTGGAATGATTACAAAGTAGGCT
TTGGTGACCCACATCGAGAGTTTTGGCTAGGAAACGATTTTATCCATGAA
ATGAGTGTCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCGTACAC
AGGCGACACCGCCATCTCAAGATACGGTGAATTTTACATCGATAACGAGA
GTCAAGATTATACTCTTCATTTCAATGAAACTCTACTGACCGGGATAGAA
TCTTTGACGAGTCGACAAAACCTGAACGGAATGAAGTTCCATACACGTGA
TCGAGATTACGGATCACCTTGTTTTCCAAACGGTCACGGTCCGTTCTGGT
TTAATAGATGTGTGTGGCTTGATCCGAACCGGCCCGATTATCTCCGCTGG
AGAACGTATGCCGGTAGTGATGTGATTCAGGAAATTCAATTGATGTTTAA
AGCTACAGGTCCGAACTAAGGACAAATTAGAGACTTTTCTGTACGGTATT
GTTCTTCAGTCTCGGAtggatttcattacaaaagttATAAAAAGAGGCTT
TTCCGTCGTGAAGCAAAATTTGACGAAGCtaggtgaattttttttttttt
ttgctagcgTGAAAAACATCCAAGAAGTTTTTTTGATATTAAAACCGAAC
TAAGCAAATTTAATTAATGCTCATTAAAGCTACATGACCGAACCAGGAAC
AAATTGACAAGATTTCCAAAGTAAACATGTTATAATGTAAATGATTTGAT
CTGAACAGTCAGTAACCAATGTTTCACAGTTTAATGCTGTTTCTCGTGAA
TATGTATGCATCTTGAAGCCATTGTAAACGATCACAAGAAATCTTCAAAT
ATGTGAAACTGACTTTTAAAACTTGCGAGACAATGGATGAGTTCAGCTTT
GGTAAAAGCGGTCCCACACTAGGATTGTTACATGcagttttttgaaagaa
aacatacCTATTGTGTAATTAGGTAATGCGTTGtttcattttcctaaaat
tataaattgaatttatttatttttcatttcaataaaatatCGCACACAAT
GTCGACTTTTATATACAGATatagacaaaaatacaggctgtttgtaggaa
aaaaataagatctagctgtttaaaagtcttctatatagttttttgagag Run BLAST on NCBI transcript from alignment at sc0003234:2238..6731- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042150 ID=TCONS_00042150|Name=TCONS_00042150|organism=Clytia hemisphaerica|type=transcript|length=4494bp|location=Sequence derived from alignment at sc0003234:2238..6731- (Clytia hemisphaerica)
GTACGAACAGCCTGTGCGCGAATCAAAAAACCTATCACCTGTAAAATACG
TGTTTATGAAAGTATCGAAAAGACTGTCGAATACGCAAAAAGATTGGTAC
GAGCGGGGGCTAAGGTAAGAAGATTGGAGAGTCTGTTATAAATGTTGACA
TTTGGTGCTCAGAGTCATTCACAATAGTACAAGAAAAACACATGACCATT
GATATCCTGCTGTATANGAGTCATTCACAATAGTACAAGAAAAAAGCATG
ACTATTGATATCCCGCTGCATGCTTTACTTCCTAACTAGTTGAGAGAAAA
TAAATACAAACTCTCGATGACGGAATTAATTTGTGGAGCTTTGGAGATTT
TGCTCGCCAGCTGGAAAGTACTACTATAGTTTTCTACTGAACCAACTATA
GACATACAAACAGAATAGATATTTTTTGTGTAGTCTAGGATTTTTTAGAC
AGTCTTGCGATTACTTTCATGGGATCCAGGCTATTTAAGAACTGAACGGA
ACATTTGAAGGAGCGGGGATTCGAACAGGGGACCCCTTATGGATGGACCT
AAAGAGAAAGGGAACAGGTTTTGGCCGGAGATAAATAGTCCTACAGCTAC
GATCACTGTGTACATAAAATAAACACGGTACACAGACCAGACCACATCAT
ACATACACACCCCTGTCTCAGTGCCCCGGTGGAACCTTTTCCCTCAGTGG
GGATGAAAATTTCTATTGAAATCCCAATAGGGATAGAAAATCTATTGCTT
CCAGCTCAAAAATTCCAGTGGGGATGGTTTTGGAGTCCAAATTTTTCCAT
TCAATTGTCAATGGGGATAGAATCATAGGCCAATTTCCCAGTGGGGTTGA
AAATGTAGGGTATTTTTTTCACCGGGGACGATTTTTTGGCCTATTTTTCC
ACCGGGGCGGGGGTCCACTGGGTTTTGTGACACAGGGGTGTATATACCTA
CATTATGAGAGCTAAAGAAGTACAGAATGCGCTATTACCTAAACTTTCCT
TTTTCTCAGATCATCACAGTTCACGGTCGACGTCGTGAACAACGAGGCCC
GCTCACCGGTATTGCAAGTTGGGATCATATCAAAGCGGTCAAGGAGGCTG
TTTCCGTGCCCGTATTTGCTAACGGAAACATCCAGTATTTGCGGGACGTC
GAAAAATGTATAGAGTATACCAAAGTGGATGCTGTGATGAGTGCAGGTCG
GTCTCCTTTCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNATTTTTATCAATTTTACAGTCGGACCTGCAAGATACTGAAG
TTGAGCCAGTGCGGTTAGCACGTTCGACAGTATTCACGTAGGTGTTAGAA
GTAATTCCATCAGTTATATGAGGTTATTCAGACAATGTTTTTTTTCACAC
TTTTTAGAGGGTGCATTATACAATCCCGCCATATTCACAGGGCGGCAACC
GCCCGCATGGGAGATGGTGGATAAATACTTAGCATACTGCAATCAATATC
CCACCAATTTGAGTTATGTGAGAGGACATTTATTTCGCATGTGGCAAAAG
TGGTATGTTCAAAACTCTTTTTCTCTCGTTTGAAAAATTATTTCAGGGAG
TAATTTTCGTAGATTTTGCAGTTTTCTGTTTAGCTCAACGCAGATAAAAT
AGTTTACCCCTCCCCCTGATTACCTTACCCAAATATATAGAAGTCGACAA
CTGAAAAAATATTCTTTTTTAATCGATTAAAAGTTCGTTCAACGAATCGA
GAGTTTGTGAAATCCAAAAATAATACTGACCACATTCCTATCTGACTTTC
TCCAAACCTAGTTACCCCCTCTCGATTTTCCTAATAAATGTTGAATTATT
GATATTCTCTTTACGATATATTGGCAACAAAATGCAGCCCAATTGAGCGG
TGTTTCTAAATTTCTTGGGTAGTGACTCAAAATTCGAAACCACATGAAAC
ACGAGCCAAACAAAATTTGAAATTGTTCCTTTTATTGAAAAGAAACTATT
TCAAATTTGACTTCAAATTCATTAATAAATCACATAGCTTGTTTGTTTTC
ATTACCATTTCTGTTACCATAGAAACATTTCAATGACGTATTCAGTATTA
AATTCTTATTGCGGCAAGTCTCTCTATCGATAATCAAAAATTTAAAATTT
AAAATTTAAAATCTTAAAAATAATTTTGGATACTGAGGAGTTGATTCACG
AAAAAATGAAGAAATGTTATCTTCTTTCTTTGTTTATCATTTTGCTGTTG
ATTACAAATACTTCACCTAACCAATATCACCTCATTACATCTAATGGTCA
TCCTTCTAAAGACCCTTACTTCACATTTTCATCCAAGTTCAAAGAACAAT
GTATAAGTGTCTGTGGTACCACTTGTAAATGCCATTCCTACTCCATCAAA
CAAACATCCAGTAATCATTATGAATGTCAATTTTTCGATAGTGCTACCAT
GCGTGAAGATCTGGTCAGAGTTTCTTATCGAATTCGCTACTTCATCAATG
CCAGGGATTGTAAAGATTGGTACAGCATTGGAGCGAGGGCGTCGGGTGTT
TACAAGGTGAACTGGATGGGGCGTTTTTTGAAAAATATCAGATGCAACAT
GGATATTGAGGGCGGAGGGTGGATTGTTTTCCAACGACGATATCAGCCTC
GCCACTTAGATTTCCAACGCTCTTGGAATGATTACAAAGTAGGCTTTGGT
GACCCACATCGAGAGTTTTGGCTAGGAAACGATTTTATCCATGAAATGAG
TGTCTCTGCGAAGCATGATTTTTTGGTGCACGCTGAAGCGTACACAGGCG
ACACCGCCATCTCAAGATACGGTGAATTTTACATCGATAACGAGAGTCAA
GATTATACTCTTCATTTCAATGAAACTCTACTGACCGGGATAGAATCTTT
GACGAGTCGACAAAACCTGAACGGAATGAAGTTCCATACACGTGATCGAG
ATTACGGATCACCTTGTTTTCCAAACGGTCACGGTCCGTTCTGGTTTAAT
AGATGTGTGTGGCTTGATCCGAACCGGCCCGATTATCTCCGCTGGAGAAC
GTATGCCGGTAGTGATGTGATTCAGGAAATTCAATTGATGTTTAAAGCTA
CAGGTCCGAACTAAGGACAAATTAGAGACTTTTCTGTACGGTATTGTTCT
TCAGTCTCGGATGGATTTCATTACAAAAGTTATAAAAAGAGGCTTTTCCG
TCGTGAAGCAAAATTTGACGAAGCTAGGTGAATTTTTTTTTTTTTTTGCT
AGCGTGAAAAACATCCAAGAAGTTTTTTTGATATTAAAACCGAACTAAGC
AAATTTAATTAATGCTCATTAAAGCTACATGACCGAACCAGGAACAAATT
GACAAGATTTCCAAAGTAAACATGTTATAATGTAAATGATTTGATCTGAA
CAGTCAGTAACCAATGTTTCACAGTTTAATGCTGTTTCTCGTGAATATGT
ATGCATCTTGAAGCCATTGTAAACGATCACAAGAAATCTTCAAATATGTG
AAACTGACTTTTAAAACTTGCGAGACAATGGATGAGTTCAGCTTTGGTAA
AAGCGGTCCCACACTAGGATTGTTACATGCAGTTTTTTGAAAGAAAACAT
ACCTATTGTGTAATTAGGTAATGCGTTGTTTCATTTTCCTAAAATTATAA
ATTGAATTTATTTATTTTTCATTTCAATAAAATATCGCACACAATGTCGA
CTTTTATATACAGATATAGACAAAAATACAGGCTGTTTGTAGGAAAAAAA
TAAGATCTAGCTGTTTAAAAGTCTTCTATATAGTTTTTTGAGAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042150-exon-sc0003234-1575043694:6618..6731 | TCONS_00042150-exon-sc0003234-1575043694:6618..6731 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1575043694:5536..5722 | TCONS_00042150-exon-sc0003234-1575043694:5536..5722 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1575043694:4480..4624 | TCONS_00042150-exon-sc0003234-1575043694:4480..4624 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1575043694:2238..3590 | TCONS_00042150-exon-sc0003234-1575043694:2238..3590 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1510915933:6618..6731 | TCONS_00042150-exon-sc0003234-1510915933:6618..6731 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1510915933:5536..5722 | TCONS_00042150-exon-sc0003234-1510915933:5536..5722 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1510915933:4480..4624 | TCONS_00042150-exon-sc0003234-1510915933:4480..4624 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1510915933:2238..3590 | TCONS_00042150-exon-sc0003234-1510915933:2238..3590 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1491911889:6618..6731 | TCONS_00042150-exon-sc0003234-1491911889:6618..6731 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1491911889:5536..5722 | TCONS_00042150-exon-sc0003234-1491911889:5536..5722 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1491911889:4480..4624 | TCONS_00042150-exon-sc0003234-1491911889:4480..4624 | Clytia hemisphaerica | exon |
| TCONS_00042150-exon-sc0003234-1491911889:2238..3590 | TCONS_00042150-exon-sc0003234-1491911889:2238..3590 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003234 | supercontig | sc0003234:2238..6731 - |
Blast
BLAST of TCONS_00042150 vs. Swiss-Prot (Human)
Match: DUS1L (tRNA-dihydrouridine(16/17) synthase [NAD(P)(+)]-like OS=Homo sapiens GN=DUS1L PE=1 SV=1) HSP 1 Score: 190.66 bits (483), Expect = 3.693e-53 Identity = 86/157 (54.78%), Postives = 119/157 (75.80%), Query Frame = 1
Query: 19 RIKKPITCKIRVYESIEKTVEYAKRLVRAGAKIITVHGRRREQRGPLTGIASWDHIKAVKEAVSVPVFANGNIQYLRDVEKCIEYTKVDAVMSAEGALYNPAIFTGRQPPAWEMVDKYLAYCNQYPTNLSYVRGHLFRMW----QKCATMREDLVRV 477
++ P+TCKIRV+ I+KTV YA+ L +AG +++TVHGR +EQ+GPL+G ASW+HIKAV++AV++PVFANGNIQ L+DVE+C+ T V VMSAEG L+NPA+F GR P WE+ ++YL ++P LSYVR HLF++W Q +RE+L +V
Sbjct: 139 KLSVPVTCKIRVFPEIDKTVRYAQMLEKAGCQLLTVHGRTKEQKGPLSGAASWEHIKAVRKAVAIPVFANGNIQCLQDVERCLRDTGVQGVMSAEGNLHNPALFEGRSPAVWELAEEYLDIVREHPCPLSYVRAHLFKLWHHTLQVHQELREELAKV 295
The following BLAST results are available for this feature:
|
