TCONS_00042141 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042141
Unique NameTCONS_00042141
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length784

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042141 ID=TCONS_00042141|Name=TCONS_00042141|organism=Clytia hemisphaerica|type=transcript|length=784bp
GTAACAGGACAGCAACTTGAAGCAATAGTTCATACTCTATTCCTAGGCGG
ATTTGAAACATCATTGACAAGCCTTCAATGGTTTGTTATCTTTCTGATTC
ACTATCCCGAAATTCAAACGAAAATATACCAACAAGTAGTCGACAATGTT
GGATTACAGCGTCAGACTGTGGCCGATGATAAAGAAAGACTTCCCTATGT
CGAAGCAGCTATTCTGGAGTTACAAAGATGCGCTTCCATCGCCCCTTTGT
CATTCCCTCACAAAGCGTTGGTTGACTCTTCTGTTGGAGGTCAATTTATA
TCAAAAGGAAGTCAAGTTCTTTTTAATATATATCACATACACAACGATCC
TACACACTGGAATGAGCCAGAGAAATTCAAACCAGAACGTTGGCTGAATC
ATGATGGAAGCTTGAAGAAAGAAAAGGCCACACATTATTTTCCATTTGGT
GCTGGTACAAGGGGCTGTTTGGGGAAAAGAATGGCCAACATACAAATGTT
TTTAGTTGTTACAAGGTTGTTAACGAATTTCGAAGTGTCGCTTGCGCCTG
GAGAACCGATGCCTGACTTGAAAGATGGAAATATGGGTATGACTTTCAAA
CATAAAAACaagtttaaaataattttgaaacaaagGAAACATTGAGCCAA
ACAAGGACTTATGAACAATCATATGAAATTGTAAACTTTTTTGGGATTTG
ATTCTTATTGAACAATAAAAGAATCCAAACTTTTGTATCCGAAGAAAAAC
CCTACATCGATAATATTTAATCTATAAgttttta
Run BLAST on NCBI

protein sequence of TCONS_00042141-protein

>TCONS_00042141-protein ID=TCONS_00042141-protein|Name=TCONS_00042141-protein|organism=Clytia hemisphaerica|type=polypeptide|length=214bp
VTGQQLEAIVHTLFLGGFETSLTSLQWFVIFLIHYPEIQTKIYQQVVDNV
GLQRQTVADDKERLPYVEAAILELQRCASIAPLSFPHKALVDSSVGGQFI
SKGSQVLFNIYHIHNDPTHWNEPEKFKPERWLNHDGSLKKEKATHYFPFG
AGTRGCLGKRMANIQMFLVVTRLLTNFEVSLAPGEPMPDLKDGNMGMTFK
HKNKFKIILKQRKH
Run BLAST on NCBI

transcript from alignment at sc0003226:12504..13287

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042141 ID=TCONS_00042141|Name=TCONS_00042141|organism=Clytia hemisphaerica|type=transcript|length=784bp|location=Sequence derived from alignment at sc0003226:12504..13287 (Clytia hemisphaerica)
taaaaacTTATAGATTAAATATTATCGATGTAGGGTTTTTCTTCGGATAC
AAAAGTTTGGATTCTTTTATTGTTCAATAAGAATCAAATCCCAAAAAAGT
TTACAATTTCATATGATTGTTCATAAGTCCTTGTTTGGCTCAATGTTTCc
tttgtttcaaaattattttaaacttGTTTTTATGTTTGAAAGTCATACCC
ATATTTCCATCTTTCAAGTCAGGCATCGGTTCTCCAGGCGCAAGCGACAC
TTCGAAATTCGTTAACAACCTTGTAACAACTAAAAACATTTGTATGTTGG
CCATTCTTTTCCCCAAACAGCCCCTTGTACCAGCACCAAATGGAAAATAA
TGTGTGGCCTTTTCTTTCTTCAAGCTTCCATCATGATTCAGCCAACGTTC
TGGTTTGAATTTCTCTGGCTCATTCCAGTGTGTAGGATCGTTGTGTATGT
GATATATATTAAAAAGAACTTGACTTCCTTTTGATATAAATTGACCTCCA
ACAGAAGAGTCAACCAACGCTTTGTGAGGGAATGACAAAGGGGCGATGGA
AGCGCATCTTTGTAACTCCAGAATAGCTGCTTCGACATAGGGAAGTCTTT
CTTTATCATCGGCCACAGTCTGACGCTGTAATCCAACATTGTCGACTACT
TGTTGGTATATTTTCGTTTGAATTTCGGGATAGTGAATCAGAAAGATAAC
AAACCATTGAAGGCTTGTCAATGATGTTTCAAATCCGCCTAGGAATAGAG
TATGAACTATTGCTTCAAGTTGCTGTCCTGTTAC

Coding sequence (CDS) from alignment at sc0003226:12504..13287

>TCONS_00042141 ID=TCONS_00042141|Name=TCONS_00042141|organism=Clytia hemisphaerica|type=CDS|length=645bp|location=Sequence derived from alignment at sc0003226:12504..13287 (Clytia hemisphaerica)
TCAATGTTTCctttgtttcaaaattattttaaacttGTTTTTATGTTTGA
AAGTCATACCCATATTTCCATCTTTCAAGTCAGGCATCGGTTCTCCAGGC
GCAAGCGACACTTCGAAATTCGTTAACAACCTTGTAACAACTAAAAACAT
TTGTATGTTGGCCATTCTTTTCCCCAAACAGCCCCTTGTACCAGCACCAA
ATGGAAAATAATGTGTGGCCTTTTCTTTCTTCAAGCTTCCATCATGATTC
AGCCAACGTTCTGGTTTGAATTTCTCTGGCTCATTCCAGTGTGTAGGATC
GTTGTGTATGTGATATATATTAAAAAGAACTTGACTTCCTTTTGATATAA
ATTGACCTCCAACAGAAGAGTCAACCAACGCTTTGTGAGGGAATGACAAA
GGGGCGATGGAAGCGCATCTTTGTAACTCCAGAATAGCTGCTTCGACATA
GGGAAGTCTTTCTTTATCATCGGCCACAGTCTGACGCTGTAATCCAACAT
TGTCGACTACTTGTTGGTATATTTTCGTTTGAATTTCGGGATAGTGAATC
AGAAAGATAACAAACCATTGAAGGCTTGTCAATGATGTTTCAAATCCGCC
TAGGAATAGAGTATGAACTATTGCTTCAAGTTGCTGTCCTGTTAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026014XLOC_026014Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042141-exon-sc0003226-1491911889:12504..13287TCONS_00042141-exon-sc0003226-1491911889:12504..13287Clytia hemisphaericaexon
TCONS_00042141-exon-sc0003226-1510915933:12504..13287TCONS_00042141-exon-sc0003226-1510915933:12504..13287Clytia hemisphaericaexon
TCONS_00042141-exon-sc0003226-1575043694:12504..13287TCONS_00042141-exon-sc0003226-1575043694:12504..13287Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042141-proteinTCONS_00042141-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003226supercontigsc0003226:12504..13287 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	3.39788	2.76069	5.98012	4.83095	0.321002	2.76991	0.625108	0.170608	5.3169	6.84338	0	0.0375985	0.418554	0.545211	16.3002	10.8031	3.8096	3.71568	2.40278	3.95071	1.97504	3.46966	14.7366	16.0738	0.0684827	0.069773
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001128Cyt_P450
IPR002401Cyt_P450_E_grp-I
IPR017972Cyt_P450_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005506iron ion binding
GO:0020037heme binding
GO:0016705oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen
Blast
[Close]
BLAST of TCONS_00042141 vs. Swiss-Prot (Human)
Match: CP17A (Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo sapiens GN=CYP17A1 PE=1 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 6.487e-41
Identity = 65/182 (35.71%), Postives = 114/182 (62.64%), Query Frame = 1 
Query:   28 VHTLFLGGFETSLTSLQWFVIFLIHYPEIQTKIYQQVVDNVGLQRQTVADDKERLPYVEAAILELQRCASIAPLSFPHKALVDSSVGGQFISKGSQVLFNIYHIHNDPTHWNEPEKFKPERWLNHDGSLKKEKATHYFPFGAGTRGCLGKRMANIQMFLVVTRLLTNFEVSLAPGEPMPDLK 573
            +  +F  G ET+ + ++W + FL+H P+++ K+Y+++  NVG  R     D+ RL  +EA I E+ R   +AP+  PHKA VDSS+G   + KG++V+ N++ +H++   W++P++F PER+LN  G+     +  Y PFGAG R C+G+ +A  ++FL++  LL  F++ +     +P L+
Sbjct:  296 IGDIFGAGVETTTSVVKWTLAFLLHNPQVKKKLYEEIDQNVGFSRTPTISDRNRLLLLEATIREVLRLRPVAPMLIPHKANVDSSIGEFAVDKGTEVIINLWALHHNEKEWHQPDQFMPERFLNPAGTQLISPSVSYLPFGAGPRSCIGEILARQELFLIMAWLLQRFDLEVPDDGQLPSLE 477
The following BLAST results are available for this feature:
BLAST of TCONS_00042141 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CP17A6.487e-4135.71Steroid 17-alpha-hydroxylase/17,20 lyase OS=Homo s... [more]
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