TCONS_00042132 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042132
Unique NameTCONS_00042132
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1626

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042132 ID=TCONS_00042132|Name=TCONS_00042132|organism=Clytia hemisphaerica|type=transcript|length=1626bp
CAATGCgtttatctttttttcagaaaatctctTTAACCTGATTTTTAAAT
CCACGGTTAGCAAATGCATAGCAAACGGGATTAAAAAGTGCGTTCAGCCA
ACCAAAGATGTAGCAAAATCTCCATAAAGGCTCTGGTAAAGATGTCTTTA
AAATTGATCTTGCTAGTATAGTAATATGATATGGGAACcaacaaataaaa
aatgctgTCGAGACCAATAAAATCCATTTTAAAGCACGCTTTTTAGTCTT
TTGTCTACATTTATCCATTTTTCGTTCACATGAAGTCTTCCGTTCTCCAT
AAAAAGAAATATTGGATGTTCTATTACGTTTTTTCCCTACTGTTGAATTA
AATCCAAGTTTCATATGAAAGTCTAACGTATTTAAAGTGAATCTTCGTTG
CCGTTTTGGTGCGGTTTGAGTAGTAGTAGATTGTAACTCGTTATGGTTCT
CCAGCTCTGTCGTCATAGTGGCAGGTCTTGGTGATAGCATTAATGTTTCT
GTAAGTGTTGAGAATCTCATCCTTTCACCATCTTCAGCATGTTTTCCTAC
CTTTTCGACGCCCATTTTATCGAAAGAGTTGACCCGAGAATCTCTTTGGC
TGGTACTATTAGAACTATCTAGAGAATCTTCTATAGTTGAAGTAGTGTCC
TTTATATTAAATCCNGAACTATCTAGAGAATCTTCTATAGTTGAAGTAGT
GTCCTTTATATTAAATCCTTGGTTAATATGTCCTTTTTTATTATCACATA
AGTCAGGTGTAGATTCAACGTCATCTAAAGTATTAGAAAGTGAGGCTATA
TTCTCAACTGCTTTGTTTGGTATAACATAGATTTTCTTTTCACCTCCACT
GATTCTTGAAATCCGTCTCGATATACATAAATAAATTACCAGTAATATAA
TACTGGGAACGATATAGCTCAAGACTACAACTATAGATGTTACAGTAAta
tcattttgatagaaatctACGTAACATTCGCTCGATGGCATTACTCTATC
AGGGTCTTCCTCAGTATAAGGGTAGATCAGGATGGGTAGCGGCCAGACCA
AAACTGGTAGCAACCATATAAGAATCACACATCGTTTCATGAATCGAGCA
TCGCATTTCACTTTATGAGTCATCGGGTAAAATATCGATCCAAATCGATC
AAATGCGATAAAAATGAGACAAAAGTTCGATGCTGTTCCTATATAGTGAT
CTAAAACCAACCATGTGTAGCAGAGACCCCGGCCTAGTGGCCAGTGACCA
ATCATTAGTAAAATAGTATAAGGATTTATTGAAAAACCCACTAGTAGATC
CGCTACAGCTAGGGAAagtataaaataatattttggtttttgtagttttt
tttttgttttgaaaacataGATGACAATGGCGTTTGGGATTATGATTGAA
AGACTCATGACGACCAGACCAAATCCAATCAGTGATAATTCTAAATCTAT
AGTTTGATTTGAGTTCATTTCTTCGTTATTCGATGTTGCGTTcgtcattt
ttgttttgttgttgttactttcctaaaaaacatcaaatgttAAGTTGAAA
GGTCATTATTTAGCAACATACATCTTATATTAAGCACAAGATAAAGCTAC
TGCGTCCCtaattgaatcaaaataat
Run BLAST on NCBI

protein sequence of TCONS_00042132-protein

>TCONS_00042132-protein ID=TCONS_00042132-protein|Name=TCONS_00042132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MTNATSNNEEMNSNQTIDLELSLIGFGLVVMSLSIIIPNAIVIYVFKTKK
KLQKPKYYFILSLAVADLLVGFSINPYTILLMIGHWPLGRGLCYTWLVLD
HYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVILIWLLPVL
VWPLPILIYPYTEEDPDRVMPSSECYVDFYQNDITVTSIVVVLSYIVPSI
ILLVIYLCISRRISRISGGEKKIYVIPNKAVENIASLSNTLDDVESTPDL
CDNKKGHINQGFNIKDTTSTIEDSLDSXGFNIKDTTSTIEDSLDSSNSTS
QRDSRVNSFDKMGVEKVGKHAEDGERMRFSTLTETLMLSPRPATMTTELE
NHNELQSTTTQTAPKRQRRFTLNTLDFHMKLGFNSTVGKKRNRTSNISFY
GERKTSCERKMDKCRQKTKKRALKWILLVSTAFFICWFPYHITILARSIL
KTSLPEPLWRFCYIFGWLNALFNPVCYAFANRGFKNQVKEIF
Run BLAST on NCBI

transcript from alignment at sc0003221:11726..13351

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042132 ID=TCONS_00042132|Name=TCONS_00042132|organism=Clytia hemisphaerica|type=transcript|length=1626bp|location=Sequence derived from alignment at sc0003221:11726..13351 (Clytia hemisphaerica)
attattttgattcaattaGGGACGCAGTAGCTTTATCTTGTGCTTAATAT
AAGATGTATGTTGCTAAATAATGACCTTTCAACTTaacatttgatgtttt
ttaggaaagtaacaacaacaaaacaaaaatgacgAACGCAACATCGAATA
ACGAAGAAATGAACTCAAATCAAACTATAGATTTAGAATTATCACTGATT
GGATTTGGTCTGGTCGTCATGAGTCTTTCAATCATAATCCCAAACGCCAT
TGTCATCtatgttttcaaaacaaaaaaaaaactacaaaaaccaaaatatt
attttatactTTCCCTAGCTGTAGCGGATCTACTAGTGGGTTTTTCAATA
AATCCTTATACTATTTTACTAATGATTGGTCACTGGCCACTAGGCCGGGG
TCTCTGCTACACATGGTTGGTTTTAGATCACTATATAGGAACAGCATCGA
ACTTTTGTCTCATTTTTATCGCATTTGATCGATTTGGATCGATATTTTAC
CCGATGACTCATAAAGTGAAATGCGATGCTCGATTCATGAAACGATGTGT
GATTCTTATATGGTTGCTACCAGTTTTGGTCTGGCCGCTACCCATCCTGA
TCTACCCTTATACTGAGGAAGACCCTGATAGAGTAATGCCATCGAGCGAA
TGTTACGTagatttctatcaaaatgataTTACTGTAACATCTATAGTTGT
AGTCTTGAGCTATATCGTTCCCAGTATTATATTACTGGTAATTTATTTAT
GTATATCGAGACGGATTTCAAGAATCAGTGGAGGTGAAAAGAAAATCTAT
GTTATACCAAACAAAGCAGTTGAGAATATAGCCTCACTTTCTAATACTTT
AGATGACGTTGAATCTACACCTGACTTATGTGATAATAAAAAAGGACATA
TTAACCAAGGATTTAATATAAAGGACACTACTTCAACTATAGAAGATTCT
CTAGATAGTTCNGGATTTAATATAAAGGACACTACTTCAACTATAGAAGA
TTCTCTAGATAGTTCTAATAGTACCAGCCAAAGAGATTCTCGGGTCAACT
CTTTCGATAAAATGGGCGTCGAAAAGGTAGGAAAACATGCTGAAGATGGT
GAAAGGATGAGATTCTCAACACTTACAGAAACATTAATGCTATCACCAAG
ACCTGCCACTATGACGACAGAGCTGGAGAACCATAACGAGTTACAATCTA
CTACTACTCAAACCGCACCAAAACGGCAACGAAGATTCACTTTAAATACG
TTAGACTTTCATATGAAACTTGGATTTAATTCAACAGTAGGGAAAAAACG
TAATAGAACATCCAATATTTCTTTTTATGGAGAACGGAAGACTTCATGTG
AACGAAAAATGGATAAATGTAGACAAAAGACTAAAAAGCGTGCTTTAAAA
TGGATTTTATTGGTCTCGAcagcattttttatttgttgGTTCCCATATCA
TATTACTATACTAGCAAGATCAATTTTAAAGACATCTTTACCAGAGCCTT
TATGGAGATTTTGCTACATCTTTGGTTGGCTGAACGCACTTTTTAATCCC
GTTTGCTATGCATTTGCTAACCGTGGATTTAAAAATCAGGTTAAagagat
tttctgaaaaaaagataaacGCATTG

Coding sequence (CDS) from alignment at sc0003221:11726..13351

>TCONS_00042132 ID=TCONS_00042132|Name=TCONS_00042132|organism=Clytia hemisphaerica|type=CDS|length=1479bp|location=Sequence derived from alignment at sc0003221:11726..13351 (Clytia hemisphaerica)
atgacgAACGCAACATCGAATAACGAAGAAATGAACTCAAATCAAACTAT
AGATTTAGAATTATCACTGATTGGATTTGGTCTGGTCGTCATGAGTCTTT
CAATCATAATCCCAAACGCCATTGTCATCtatgttttcaaaacaaaaaaa
aaactacaaaaaccaaaatattattttatactTTCCCTAGCTGTAGCGGA
TCTACTAGTGGGTTTTTCAATAAATCCTTATACTATTTTACTAATGATTG
GTCACTGGCCACTAGGCCGGGGTCTCTGCTACACATGGTTGGTTTTAGAT
CACTATATAGGAACAGCATCGAACTTTTGTCTCATTTTTATCGCATTTGA
TCGATTTGGATCGATATTTTACCCGATGACTCATAAAGTGAAATGCGATG
CTCGATTCATGAAACGATGTGTGATTCTTATATGGTTGCTACCAGTTTTG
GTCTGGCCGCTACCCATCCTGATCTACCCTTATACTGAGGAAGACCCTGA
TAGAGTAATGCCATCGAGCGAATGTTACGTagatttctatcaaaatgata
TTACTGTAACATCTATAGTTGTAGTCTTGAGCTATATCGTTCCCAGTATT
ATATTACTGGTAATTTATTTATGTATATCGAGACGGATTTCAAGAATCAG
TGGAGGTGAAAAGAAAATCTATGTTATACCAAACAAAGCAGTTGAGAATA
TAGCCTCACTTTCTAATACTTTAGATGACGTTGAATCTACACCTGACTTA
TGTGATAATAAAAAAGGACATATTAACCAAGGATTTAATATAAAGGACAC
TACTTCAACTATAGAAGATTCTCTAGATAGTTCNGGATTTAATATAAAGG
ACACTACTTCAACTATAGAAGATTCTCTAGATAGTTCTAATAGTACCAGC
CAAAGAGATTCTCGGGTCAACTCTTTCGATAAAATGGGCGTCGAAAAGGT
AGGAAAACATGCTGAAGATGGTGAAAGGATGAGATTCTCAACACTTACAG
AAACATTAATGCTATCACCAAGACCTGCCACTATGACGACAGAGCTGGAG
AACCATAACGAGTTACAATCTACTACTACTCAAACCGCACCAAAACGGCA
ACGAAGATTCACTTTAAATACGTTAGACTTTCATATGAAACTTGGATTTA
ATTCAACAGTAGGGAAAAAACGTAATAGAACATCCAATATTTCTTTTTAT
GGAGAACGGAAGACTTCATGTGAACGAAAAATGGATAAATGTAGACAAAA
GACTAAAAAGCGTGCTTTAAAATGGATTTTATTGGTCTCGAcagcatttt
ttatttgttgGTTCCCATATCATATTACTATACTAGCAAGATCAATTTTA
AAGACATCTTTACCAGAGCCTTTATGGAGATTTTGCTACATCTTTGGTTG
GCTGAACGCACTTTTTAATCCCGTTTGCTATGCATTTGCTAACCGTGGAT
TTAAAAATCAGGTTAAagagattttctga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_026005XLOC_026005Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042132-proteinTCONS_00042132-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042132-exon-sc0003221-1491911889:11726..13351TCONS_00042132-exon-sc0003221-1491911889:11726..13351Clytia hemisphaericaexon
TCONS_00042132-exon-sc0003221-1510915933:11726..13351TCONS_00042132-exon-sc0003221-1510915933:11726..13351Clytia hemisphaericaexon
TCONS_00042132-exon-sc0003221-1575043694:11726..13351TCONS_00042132-exon-sc0003221-1575043694:11726..13351Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003221supercontigsc0003221:11726..13351 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.436151	0.627669	0.135563	0.0695624	13.0054	8.86308	4.9196	4.60554	0.788666	0.960342	0.493371	0.370614	1.06359	1.36868	0.908698	0.515052	0.295541	2.106	2.75538	3.60456	0.430898	0.319787	0.52922	1.03645	0.281554	0.411274	0.132338	0.036639	0	0.104434
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000276GPCR_Rhodpsn
IPR017452GPCR_Rhodpsn_7TM
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00042132 vs. Swiss-Prot (Human)
Match: ACM2 (Muscarinic acetylcholine receptor M2 OS=Homo sapiens GN=CHRM2 PE=1 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 4.533e-30
Identity = 125/469 (26.65%), Postives = 201/469 (42.86%), Query Frame = -3 
Query:   23 MSLSIIIPNAIVIYVFXXXXXXXXXKYYFILSLAVADLLVG-FSINPYTILLMIGHWPLGRGLCYTWLVLDHYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVXXXXXXXXXXXXXXXXXXXYTEEDPDRVMPSSECYVDFYQNDITVTSIVVVLSYIVPSIILLVIYLCISRRI-SRISGGEKKIYVIPNKAVENIASLSNTLDDVESTPDLCDNKKGHINQGFNIKDTTSTIEDSLDSSGFNIKDTTSTIEDSLDSSNSTSQRDSRVNSFDKMGVEKVGKHAEDGERMRFSTLTETLMLSPRPATMTTELENHNELQSTTT-----QTAPKRQRRFTLNTLDFHMKLGFNSTVGKKRNRTSNISFYGERKTSCERKMDKCRQKTKKRALKWILLVSTAFFICWFPYHITILARSILKTSLPEPLWRFCYIFGWLNALFNPVCYAFANRGFKNQVKEIF 1408
            +SL  II N +V+   K  + LQ    YF+ SLA ADL++G FS+N YT+  +IG+WPLG  +C  WL LD+ +  AS   L+ I+FDR+  +  P+T+ VK   +     +   W+L  ++W   IL + +      R +   ECY+ F+ N   VT    + ++ +P II+ V+Y  ISR   SRI   +K       + V N   +S +L                  QG  +K   + +  S D    N         D +  + +  Q + + +S D   V  V  +  D E            ++    T++T L +  +  S  T        PK       NT      +    + G+  +   NI      K + +    K     +K+  + IL +  AF I W PY++ +L  +     +P  +W   Y   ++N+  NP CYA  N  FK   K + 
Sbjct:   33 LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVG--VRTVEDGECYIQFFSNA-AVTFGTAIAAFYLPVIIMTVLYWHISRASKSRIKKDKK-------EPVANQDPVSPSLV-----------------QGRIVKPNNNNMPSSDDGLEHNKIQNGKAPRDPV--TENCVQGEEKESSNDSTSVSAVASNMRDDE------------ITQDENTVSTSLGHSKDENSKQTCIRIGTKTPKSDSCTPTNT-----TVEVVGSSGQNGDEKQNIVARKIVKMTKQPAKKKPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 455
The following BLAST results are available for this feature:
BLAST of TCONS_00042132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACM24.533e-3026.65Muscarinic acetylcholine receptor M2 OS=Homo sapie... [more]
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