TCONS_00042132-protein (polypeptide) - C. hemisphaerica

Overview


Name	TCONS_00042132-protein
Unique Name	TCONS_00042132-protein
Type	polypeptide
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	492

Sequence

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>TCONS_00042132-protein ID=TCONS_00042132-protein|Name=TCONS_00042132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=492bp
MTNATSNNEEMNSNQTIDLELSLIGFGLVVMSLSIIIPNAIVIYVFKTKK
KLQKPKYYFILSLAVADLLVGFSINPYTILLMIGHWPLGRGLCYTWLVLD
HYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVILIWLLPVL
VWPLPILIYPYTEEDPDRVMPSSECYVDFYQNDITVTSIVVVLSYIVPSI
ILLVIYLCISRRISRISGGEKKIYVIPNKAVENIASLSNTLDDVESTPDL
CDNKKGHINQGFNIKDTTSTIEDSLDSXGFNIKDTTSTIEDSLDSSNSTS
QRDSRVNSFDKMGVEKVGKHAEDGERMRFSTLTETLMLSPRPATMTTELE
NHNELQSTTTQTAPKRQRRFTLNTLDFHMKLGFNSTVGKKRNRTSNISFY
GERKTSCERKMDKCRQKTKKRALKWILLVSTAFFICWFPYHITILARSIL
KTSLPEPLWRFCYIFGWLNALFNPVCYAFANRGFKNQVKEIF

Run BLAST on NCBI

Gene-mRNA-Prot

This polypeptide comes from the following gene feature:


Feature Name	Unique Name	Species	Type
XLOC_026005	XLOC_026005	Clytia hemisphaerica	gene

This polypeptide derives from the following transcript feature(s):


Feature Name	Unique Name	Species	Type
TCONS_00042132	TCONS_00042132	Clytia hemisphaerica	transcript

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000276	GPCR_Rhodpsn
IPR017452	GPCR_Rhodpsn_7TM

Vocabulary: **Biological Process**
Term	Definition
GO:0007186	G-protein coupled receptor signaling pathway

Vocabulary: **Molecular Function**
Term	Definition
GO:0004930	G-protein coupled receptor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This polypeptide is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007186	G-protein coupled receptor signaling pathway
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0004930	G-protein coupled receptor activity

InterPro

Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000276	G protein-coupled receptor, rhodopsin-like	PRINTS	PR00237	GPCRRHODOPSN	coord: 23..47 score: 18.22 coord: 100..122 score: 29.06 coord: 422..446 score: 28.91 coord: 459..485 score: 27.25 coord: 56..77 score: 36.78 coord: 187..210 score: 20.81
IPR000276	G protein-coupled receptor, rhodopsin-like	SMART	SM01381	7TM_GPCR_Srsx_2	coord: 36..492 e-value: 2.2E-4 score: -45.0
IPR000276	G protein-coupled receptor, rhodopsin-like	PFAM	PF00001	7tm_1	coord: 39..477 e-value: 2.9E-55 score: 187.3
IPR000276	G protein-coupled receptor, rhodopsin-like	PROSITE	PS00237	G_PROTEIN_RECEP_F1_1	coord: 106..122
None	No IPR available	GENE3D	1.20.1070.10		coord: 1..492 e-value: 2.7E-71 score: 239.7
None	No IPR available	SUPERFAMILY	81321	Family A G protein-coupled receptor-like	coord: 411..492 coord: 9..217
IPR017452	GPCR, rhodopsin-like, 7TM	PROSITE	PS50262	G_PROTEIN_RECEP_F1_2	coord: 38..477 score: 33.672

Blast

[Close]

BLAST of TCONS_00042132-protein vs. Swiss-Prot (Human)
Match: ACM2 (Muscarinic acetylcholine receptor M2 OS=Homo sapiens GN=CHRM2 PE=1 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.205e-40
Identity = 125/469 (26.65%), Postives = 201/469 (42.86%), Query Frame = 0

Query:   31 MSLSIIIPNAIVIYVFKTKKKLQKPKYYFILSLAVADLLVG-FSINPYTILLMIGHWPLGRGLCYTWLVLDHYIGTASNFCLIFIAFDRFGSIFYPMTHKVKCDARFMKRCVILIWLLPVLVWPLPILIYPYTEEDPDRVMPSSECYVDFYQNDITVTSIVVVLSYIVPSIILLVIYLCISRRI-SRISGGEKKIYVIPNKAVENIASLSNTLDDVESTPDLCDNKKGHINQGFNIKDTTSTIEDSLDSXGFNIKDTTSTIEDSLDSSNSTSQRDSRVNSFDKMGVEKVGKHAEDGERMRFSTLTETLMLSPRPATMTTELENHNELQSTTT-----QTAPKRQRRFTLNTLDFHMKLGFNSTVGKKRNRTSNISFYGERKTSCERKMDKCRQKTKKRALKWILLVSTAFFICWFPYHITILARSILKTSLPEPLWRFCYIFGWLNALFNPVCYAFANRGFKNQVKEIF 492
            +SL  II N +V+   K  + LQ    YF+ SLA ADL++G FS+N YT+  +IG+WPLG  +C  WL LD+ +  AS   L+ I+FDR+  +  P+T+ VK   +     +   W+L  ++W   IL + +      R +   ECY+ F+ N   VT    + ++ +P II+ V+Y  ISR   SRI   +K+        V N   +S +L                  QG  +K   + +  S D    N         D +  + +  Q + + +S D   V  V  +  D E            ++    T++T L +  +  S  T        PK       NT      +    + G+  +   NI      K + +    K     +K+  + IL +  AF I W PY++ +L  +     +P  +W   Y   ++N+  NP CYA  N  FK   K + 
Sbjct:   33 LSLVTIIGNILVMVSIKVNRHLQTVNNYFLFSLACADLIIGVFSMNLYTLYTVIGYWPLGPVVCDLWLALDYVVSNASVMNLLIISFDRYFCVTKPLTYPVKRTTKMAGMMIAAAWVLSFILWAPAILFWQFIVGV--RTVEDGECYIQFFSNA-AVTFGTAIAAFYLPVIIMTVLYWHISRASKSRIKKDKKE-------PVANQDPVSPSLV-----------------QGRIVKPNNNNMPSSDDGLEHNKIQNGKAPRDPV--TENCVQGEEKESSNDSTSVSAVASNMRDDE------------ITQDENTVSTSLGHSKDENSKQTCIRIGTKTPKSDSCTPTNT-----TVEVVGSSGQNGDEKQNIVARKIVKMTKQPAKKKPPPSREKKVTRTILAILLAFIITWAPYNVMVLINTFCAPCIPNTVWTIGYWLCYINSTINPACYALCNATFKKTFKHLL 455

The following BLAST results are available for this feature:

BLAST of TCONS_00042132-protein vs. Swiss-Prot (Human)

BLAST of TCONS_00042132-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACM2	1.205e-40	26.65	Muscarinic acetylcholine receptor M2 OS=Homo sapie...	[more]

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TCONS_00042132-protein (polypeptide) - C. hemisphaerica