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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042121 ID=TCONS_00042121|Name=TCONS_00042121|organism=Clytia hemisphaerica|type=transcript|length=1653bpRun BLAST on NCBI protein sequence of TCONS_00042121-protein >TCONS_00042121-protein ID=TCONS_00042121-protein|Name=TCONS_00042121-protein|organism=Clytia hemisphaerica|type=polypeptide|length=411bp MDIILQPTPAITYRTIGGILEFYFLMGPTPDSVIQQYTDVVGKPVMPPYWRun BLAST on NCBI transcript from alignment at sc0003218:649..12832+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00042121 ID=TCONS_00042121|Name=TCONS_00042121|organism=Clytia hemisphaerica|type=transcript|length=12184bp|location=Sequence derived from alignment at sc0003218:649..12832+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003218:649..12832+ >TCONS_00042121 ID=TCONS_00042121|Name=TCONS_00042121|organism=Clytia hemisphaerica|type=CDS|length=12330bp|location=Sequence derived from alignment at sc0003218:649..12832+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00042121 vs. Swiss-Prot (Human)
Match: LYAG (Lysosomal alpha-glucosidase OS=Homo sapiens GN=GAA PE=1 SV=4) HSP 1 Score: 593.193 bits (1528), Expect = 0.000e+0 Identity = 287/549 (52.28%), Postives = 382/549 (69.58%), Query Frame = 3
Query: 6 IYDPANQRYEVPIPVPKVTTKASSTDYDVTVVESPFGFKVTRKSTGTVIFNTAIPTQGFIFADQYLQIASVLPSSNIYGLGEHVLGLKLNTSWSRLSLFSRDIATPEGGVNLYGVHPFYVGVEKDGNAHGVFFKNSNAMDIILQPTPAITYRTIGGILEFYFLMGPTPDSVIQQYTDVVGKPVMPPYWSLGFHLCRYGYNTMDNLLKVHQRMVDNQIPQDTQWNDIDYMNSHLDFTIDPTNFADLPSFSQKLRSSGMHYILMADPAISSSQSPGSYKPYDDGISMDIFVKDINGKPLQGVVWPGHTVFPDFFNPNASVYWYNQIKNFYDNTIKFDGLWIDMNEPSNFVRGSLDGCPMDNKLETPPFVPGIIGGVLSDKTICMTAKQYTGNHYDVHSLYGHSESIATMDAMKKVLGKRSVVITRSSYPGTGHHAGHWLGDNHSQFEDLYRSISGILNFNMFGVPFVGADICGFLGDTNEELCQRWMQLGAFYPFMRNHNNINQKDQDPGAFGDGLIKTSKXXXXXXXXXXXXXXXXHFESFMTGSTVARP 1652
I DPAN+RYEVP+ P V ++A S Y V E PFG V R+ G V+ NT + FADQ+LQ+++ LPS I GL EH+ L L+TSW+R++L++RD+A P G NLYG HPFY+ +E G+AHGVF NSNAMD++LQP+PA+++R+ GGIL+ Y +GP P SV+QQY DVVG P MPPYW LGFHLCR+GY++ +V + M P D QWND+DYM+S DFT + F D P+ Q+L G Y+++ DPAISSS GSY+PYD+G+ +F+ + G+PL G VWPG T FPDF NP A +W + + F+D + FDG+WIDMNEPSNF+RGS DGCP +N+LE PP+VPG++GG L TIC ++ Q+ HY++H+LYG +E+IA+ A+ K G R VI+RS++ G G +AGHW GD S +E L S+ IL FN+ GVP VGAD+CGFLG+T+EELC RW QLGAFYPFMRNHN++ Q+P +F + + + AL RY LLP+LYTL ++ + G TVARP
Sbjct: 183 IKDPANRRYEVPLETPHVHSRAPSPLYSVEFSEEPFGVIVRRQLDGRVLLNTTVAP--LFFADQFLQLSTSLPSQYITGLAEHLSPLMLSTSWTRITLWNRDLA-PTPGANLYGSHPFYLALEDGGSAHGVFLLNSNAMDVVLQPSPALSWRSTGGILDVYIFLGPEPKSVVQQYLDVVGYPFMPPYWGLGFHLCRWGYSSTAITRQVVENMTRAHFPLDVQWNDLDYMDSRRDFTFNKDGFRDFPAMVQELHQGGRRYMMIVDPAISSSGPAGSYRPYDEGLRRGVFITNETGQPLIGKVWPGSTAFPDFTNPTALAWWEDMVAEFHDQ-VPFDGMWIDMNEPSNFIRGSEDGCP-NNELENPPYVPGVVGGTLQAATICASSHQFLSTHYNLHNLYGLTEAIASHRALVKARGTRPFVISRSTFAGHGRYAGHWTGDVWSSWEQLASSVPEILQFNLLGVPLVGADVCGFLGNTSEELCVRWTQLGAFYPFMRNHNSLLSLPQEPYSFSEPAQQAMRKALTLRYALLPHLYTLFHQAHVAGETVARP 726 The following BLAST results are available for this feature:
BLAST of TCONS_00042121 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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