XLOC_025998 (gene) - C. hemisphaerica

Overview


Name	XLOC_025998
Unique Name	XLOC_025998
Type	gene
Organism	Clytia hemisphaerica (Jellyfish)

Sequence

The following sequences are available for this feature:

gene from alignment at sc0003218:649..12832+

gene from alignment at sc0003218:649..12832+

Legend: gene

Hold the cursor over a type above to highlight its positions in the sequence below.

>XLOC_025998 ID=XLOC_025998|Name=XLOC_025998|organism=Clytia hemisphaerica|type=gene|length=12184bp|location=Sequence derived from alignment at sc0003218:649..12832+ (Clytia hemisphaerica)
TTTAGATTTACGATCCAGCCAATCAGCGTTACGAGGTTCCCATTCCAGTT
CCCAAGGTTACTACCAAAGCTTCATcaactgattatgacgtcactgtTGT
CGAATCTCCTTTCGGATTCAAAGTCACCAGAAAATCAACAGGAACTGTTA
TGTAAGTCTTGCATTCAcggtcgaaatatattgggaTTTACATTTTTGGC
AAGCTTTTTTATGATACTACACCCcgtgtgtcacagacccgctgggaccg
tttggaaaaataccctaaaatttcagccccactgggaaatggACCTCGAT
TTCATCCCAAGTTGCACTCTAGAACCATCCCCACAGGATTCTTTGATCTT
GGAACaacagaatttctatccccattgggatttcgatagggatttttatc
cccgctgtggaaaaaaaagtttcaccggggctgtgagacaggggggATAC
TGGTAGCGTTCACAAAAACTTTCTTAATTGcatcacgtccatcagtaaaa
aaCAAAGTGGTGCAAGTGACTCTGGTCACGTGAttggatttttaaaattt
ttcaaagttctCTGCTGCTTTTCcagattttgatgttttgttaTTTGATA
TAAGATGTTCTTATGAAGAGTGTCATAAAAACATGTATAAAACGTGTATT
TTCTCTCTCTCTATTACAGCTTCAATACAGCTATTCCAACGCAAGGCTTT
ATTTTCGCTGATCAATACTTACAAATTGCATCTGTTCTTCCTTCATCAAA
CATCTATGGTCTTGGTGAACACGTGCTTGGGTTGAAACTGAACACTTCAT
GGTCACGCCTCTCATTGTTCTCAAGAGATATTGCCACACCTGAGGTAAAG
TTAATGATGTCTAAAGTCTCTTAAAGAATGCGCCCGTTGCGAAAATCACC
CTCAAGGGAATGACTCCAGATAATTTCAGCTGACATGGTGCACACCGTCA
TTTTTCGTTATAAACATTCGCTTACCATCTGGATAAGGCTATCACTGTGT
CTCACTCacattctgccgattggtagtgtgaaggtttcgatcacagactt
gcaccgcaatggactgtgttcgaatcccaagctcTTGCAGGTAGGGTGTT
AGCGAAATATGGTGATACACTCTCTACGCTCAACAATATATAAATTCCAC
ACTTGAAGCCATAACTTCAAAAAGTGAAAGACGACGAAAGCCGTCTAAAG
CGTCAGCACAACAAACCAGGGTTTCAAGTTTGAGTCATCGGCTCTTCGGT
TGTTCCGTCAAGCTCATACCCatagaaataatcaaaacattgtCAAATTG
TCCGAGATTACTGGGTAATCTACGTAAACGGTAGTTCGTTGGACAACTTT
ATAAcgaaaaagtttttctatttatGTAGGGTGGAGTCAATTTATATGGT
GTACATCCATTTTACGTCGGTGTTGAAAAGGATGGAAACGCTCATGGTGT
ATTCTTTAAAAACAGCAATGCTATGGGTAAGGTTATGTATAATTTGGTCG
ATCTAAATTGATTGAGTGGAATCCTCGGACTATGGAACTATATAAAAGAC
GGAAGGGGACAGGCTCTTACTTAACTGAGATACAAGGATAGATGGCGTCA
AAAATTTCTATCTCGTGTGAGTTTATTAATGAAACAGTTTTCAGATAGTT
CGCATGATTCGAACCTGGTGAAAAAAAACCTAATCTTAGAGAAGATTTCC
AAATCCTGATAATATAGCTAAGATCATAAATCTTTTTACATGCTTGAGAT
ATTTTAAGAATATTATTTACCCTCACTTACGAGCTGTCAAAACTTTAACC
GTTTTACTTCTATTTTTTCAGACATCATTTTGCAACCAACACCAGCCATT
ACCTACCGTACTATTGGTGGAATCTTAGAGTTTTATTTCCTGATGGGACC
AACACCTGATAGTGTCATCCAACAATATACCGATGTATGTTATCTTTCCT
CGTTCCCGGGGTTCAAACCACAATGGGTTTCACTCCCCCACTTGTAGTCT
CGTAAAATATCCCTCCTTTCTTCTTTTGTAAAAGTGGACGCTCCAAATTG
TTTCTATAATGGGTTCCTTTTCTTTAATAtgaaatttgtttcaaaaattt
acCTTCCAGTGGCAAATAATGGTCCATTTCGTTTTAtgaccatacagggg
ggggtggaggaacatttccaggggataatctgagaagaatttccaagggg
tctaaagaattgttttttacatttttccagggtgtaaaaagttattcttg
aaTTTCCAGGGAGTGAatgactgattttagttcgtccaccctcactttca
GACATAAGAAGAATTTTTTCCAATGGTTCTTTTGCaacttttgccatttt
ccagggggtatgtacactttttctacatttttttttcacttgaaaagatt
catccacccccccccctgtatggaaattttatggaacagcccaatgtcTA
TGAAAAGACTAGTAAAGGAGACTAGAATTTGGCATGAATTTTAAATCTAA
CCTAAGACAATGGACGCGGCTTTTTTAAAACAATCTCTTTCGTGTCTCTT
TTCAGGTCGTTGGAAAGCCAGTCATGCCACCATATTGGTCTTTGGGATTC
CATCTCTGTCGCTATGGTTACAATACAATGGATAATCTATTGAAGGTAAG
TTTATGTGACTATAGGCTCTTTCAAAATTTAGTGGGTTGATGGATATTTC
CGTACCTTAATCACCACAGAGGTCCTTTGCTGTTGAACTCGGGATGCCTT
CCAAGATTTTCGACGAAAAGTTCCATAAGTATATTCTAGTTTTAGCTCCT
ACAAGGTACCGTAGTTTTATGCAACTAATACTCTTCTATAAAAAGTGAAA
GTTaatctttaagaaaaaatctgCTCTTCAGGTAAAATCGACTTAAagca
ataactttttttatctGCCTTGATGAGTGCTCGGTACTGTAGTCTGTGAG
AGTGCCTGTGACCGAATTTGTCAAAATATAAATCAGCATGTCATCAGTGA
GGCACAGTATACAACAATCACTACTTAATTCATCTTAGGTTCATCAACGT
ATGGTGGACAATCAAATTCCACAAGATACTCAATGGAATGATATTGATTA
CATGAATTCTCATCTTGATTTCACTATTGATCCAACAAACTTTGCTGATC
TTCCATCGTTCTCTCAGAAATTGAGATCCTCAGGAATGCACTATATCTTA
ATGGCTGTAAGATAACATTTTGTACAGGAGCCTCTCCATAACTCAATTTG
ACTTTCAATTTtctgggatgagctggagtttttacaagatacttcactaa
ttggtcatttgaagtgatagagatgacacgttctttagaaaaagtaacaa
aattgttttattactggttaacgaccaactaAATTAAATaagatcttgta
aaaactccagtaACTCTTTTCTATTCAAGCAAATATTTGTACCAATTCAA
AAGACTTAAAGTTTAATTCGCTCAGAAATTTGTATGAGTTTTGTCGTGTA
TTTTTTACCCAAGCCGTGACCTACGTTTAAGAGTTATTAAGAATTCTATG
TGGAAAATTTTTGGGTTGCGAGGATTTGGCTAAATCGGTTTAGCCGTAAA
CAAAAACTCACTTCGTTTATATTTCAACGCGGTTGAAATAGCATTCTTAT
CTTGCAAATTAGGATCCAGCTATCAGTTCATCACAGTCTCCAGGAAGCTA
TAAACCTTATGACGATGGAATCTCAATGGATATCTTTGTCAAAGACATCA
ATGGAAAACCATTACAAGGAGTTGTATGGCCTGGGCATACCGTTTTCCCC
GATTTCTTCAATCCAAACGCCAGCGTTTATTGGTACAACCAGATTAAAAA
CTTCTATGACAACACCATCAAATTTGATGGGCTATGGATTGTAAGTTTGA
TTTAATATGAAGCCTCCCCCCCCCACGAGTCCTTCGCTTTACGAAGTAGC
AATCCCATCGTTGATAGTGCATTTTCAACAAAAGTCTCAATCTCAAACTC
CGCCTGCAATAGAAGACTAATGATACTCCTATTTCCGTGGGCTTTTAGGG
TGCGGGTGTTTTTACCCCGGTCCAATTCCGAAGTCCTGCGAaagtttttg
ctaaattccgtttttcctgactaaaattattcaatttttcgtCTCCGATA
ACGAACCCAATTTCCGAATTCCATcgaaattttcatcgaattccGCCACT
TCGTTCAGAAAAGGGCCTATTCCCCTCCTCCGCTAACCGCTACCCCATTT
TACCCCACTACCCCGCTAAACCATTTTATCTATATAGATAGGCGTTGAAA
AAAGACTTTATATGCATGCTTGTTTTTAGCGTTCAGATTTTCACAACATG
CGTTATACTCTTTTCTAGATATCTTCCTTTTTCCTTCTTCTCTTCCTTTT
TATTTCAACCTTATTACTTTACCAGGATATGAACGAACCATCTAACTTCG
TTCGAGGATCACTTGACGGATGCCCTATGGATAACAAATTGGAAACTCCT
CCTTTCGTTCCTGGAATCATCGGTGGAGTGTTATCTGATAAGACCATCTG
TATGACTGCTAAACAATATACTGGTAACCATTACGACGTGCACAGTTTGT
ATGGACATTCTGAATCAATTGCCACTATGGAGTAAGTGATTGCGACCACA
ATTTTTTCTCGTTAAAGATATTTCTAGGAGGCGCGCCTTTATGCTGACGA
AACAGAATTGACAAAAGAACTTCTCAACATTTATTTGTATTGGCGCGGTA
CAGCGTAAGTCTTCGGCCGCTGGTAAACCGTATATTAAAGTCTTGAAGGT
CTCCGGCCGCTGGCGTAGGTTTTCGTCCGTCGATGGAAAAAAAAATCCAC
CGCGGCGCTGTAGGGAGAGAAAGTTGttcttttgtttgtttgaaaatgcC
TTTTATCCATTACTGTCCttacttttttaacttttttatccAATACTAAT
ATGAACTTCAACAAGTCTAGGTGGGTGCAATACAAGACCTCTAAGCTTTA
CATATGAAATTTCGAATCTGATCTTTTCTTTGTAAAGTTTTGAATCTGAT
CTGTTATTTTACTGTAACTTTTCGTTCATTTTAGTGCAATGAAGAAAGTG
TTAGGCAAAAGAAGTGTTGTAATCACCCGTTCTTCATACCCTGGTACAGG
TCACCATGCGGGACATTGGTTAGGTGATAACCACAGTCAATTTGAAGATT
TGTATCGATCAATCTCaggtaagaaaattttgaagatgaagatgaaaaat
atgaatttctaCTGTAAATTTGTACCTTTATTCCCTCAGGAGCAATGTTT
CAAAAAGTACGGGCCCCTCAGTTATTCTGGAATAGACTTTAGATGCTTAA
GTACCATACTTTGGcggaatcaaaattttgaaatttctctagTCTGATAA
ATCAACTgaaccaaaaatcaaaactaaagtGATTTTTAAATCTCGTTTTA
CATAGATATTTCAAATTCTGTTTTACACTTTAACACACAAGGTATTGCAA
TAATATACCACAACGTTATAATTTGATNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGACCAACTAAATTAAATaagatcttgtaaaaactccagtaAC
TCTTTTCTATTCAAGCAAATATTTGTACTAATTCAAAAGACTTAAAGTTT
AATTCGCTCAGAAATTTGTATGAGTTTTGTCGTGTATTTTTTACCCAAGC
CGTGACCTACGTTTAAGAGTTATTAAGAATTCTATGTGGAAAATTTTTGG
GTTGCGAGGATTTGGCTAAATCGGTTTAGCCGTAAACAAAAACTCACTTC
GTTTATATTTCAACGCGGTTGAAATAGCATTCTTATCTTGCAAATTAGGA
TCCAGCTATCAGTTCATCACAGTCTCCAGGAAGCTATAAACCTTATGACG
ATGGAATCTCAATGGATATCTTTGTCAAAGACATCAATGGAAAACCATTA
CAAGGAGTTGTATGGCCTGGGCATACCGTTTTCCCCGATTTCTTCAATCC
AAACGCCAGCGTTTATTGGTACAACCAGATTAAAAACTTCTATGACAACA
CCATCAAATTTGATGGGCTATGGATTGTAAGTTTGATTTAATATGAAGCC
TCCCCCCCACGAGTCCTTCGCTTTACGAAGTAGCAATCCCATCGTTGATA
GTGCATTTTCAACAAAAGTCTCAATCTCAAACTCCGCCTGCAATAGAAGA
CTAATGATACTCCTATTTCCGTGGGCTTTTAGGGTGCGGGTGTTTTTACC
CCGGTCCAATTCCGAAGTCCTGCGAaagtttttgctaaattccgtttttc
ctgactaaaattattcaatttttcgtCTCCGATAACGAACCCAATTTCCG
AATTCCATcgaaattttcatcgaattccGCCACTTCGTTCAGAAAAGGGC
CTATTCCCCTCCTCCGCTAACCGCTACCCCATTTTACCCCACTACCCCGC
TAAACCATTTTATCTATATAGATAGGCGTTGAAAAAAGACTTTATATGCA
TGCTTGTTTTTAGCGTTCAGATTTTCACAACATGCGTTATACTCTTTTCT
AGATATCTTCCTTTTTCCTTCTTCTCTTCCTTTTTATTTCAACCTTATTA
CTTTACCAGGATATGAACGAACCATCTAACTTCGTTCGAGGATCACTTGA
CGGATGCCCTATGGATAACAAATTGGAAACTCCTCCTTTCGTTCCTGGAA
TCATCGGTGGAGTGTTATCTGATAAGACCATCTGTATGACTGCTAAACAA
TATACTGGTAACCATTACGACGTGCACAGTTTGTATGGACATTCTGAATC
AATTGCCACTATGGAGTAAGTGATTGCGACCACAATTTTTTCTCGTTAAA
GATATTTCTAGGAGGCGCGCCTTTATGCTGACGAAACAGAATTGACAAAA
GAACTTCTCAACATTTATTTGTATTGGCGCGGTACAGCGTAAGTCTTCGG
CCGCTGGTAAACCGTATATTAAAGTCTTGAAGGTCTCCGGCCGCTGGCGT
AGGTTTTCGTCCGTCGATGGAAAAAAAAATCCACCGCGGCGCTGTAGGGA
GAGGAAGTTGttcttttgtttgtttgaaaatgcCTTTTATCCATTACTGT
CCttacttttttaacttttttatccAATACTAATATGAACTTCAACAAGT
CTAGGTGGGTGCAATACAAGACCTCTAAGCTTTACATATGAAATTTCGAA
TCTGATCTTTTCTTTGTAAAGTTTTGAATCTGATCTGTTATTTTACTGTA
ACTTTTCGTTCATTTTAGTGCAATGAAGAAAGTGTTAGGCAAAAGAAGTG
TTGTAATCACCCGTTCTTCATACCCTGGTACAGGTCACCATGCGGGACAT
TGGTTAGGTGATAACCACAGTCAATTTGAAGATTTGTATCGATCAATCTC
aggtaagaaaattttgaagatgaagatgaaaaatatgaatttctaCTGTA
AATTTGTACCTTTATTCCCTCAGGAGCAATGTTTCAAAAAGTACGGGCCC
CTCAGTTATTCTGGAATAGACTTTAGATGCTTAAGTACCATACTTTGGcg
gaatcaaaattttgaaatttctctagTCTGATAAATCAACTgaaccaaaa
atcaaaactaaagtGATTTTTAAATCTCGTTTTACATAGATATTTCAAAT
TCTGTTTTACACTTTAACACACAAGGTATTGCAATAATATACCACAACGT
TATAATTTGATGggaatttgatacattttaggtattttgaatttcaacat
GTTTGGCGTTCCATTCGTTGGCGCCGATATCTGTGGTTTCCTTGGTGATA
CAAATGAAGAATTATGTCAACGATGGATGCAGCTTGGTGCCTTCTATCCT
TTCATGAGAAACCATAACAATATTAACCAAAAGGTAAAGCCAAGAAATTC
CCTTATCTCAAACtggaacccagtcccttagttcacttttgtttgaattt
ctcaaatttaggttctcaaaattttgctgattttattATAGAGCTAAGCA
AAcccaaaaaacccaaaaattttCCGACTCAAAAATTTGACGCGTCAATC
ACTTTGCTTTATCGGTAATATTGGTGTGGGCAGGGGGTGCAGACACAGGG
TAATGACCCATAgccaggtggtggtgtctatttttgcatttcaaaaaagt
tagtaccggTACTACTTTGGGGGTGGGGGTAtgtatttttcactcttcaa
gcaagtacaggatactatttgggtattttttcacagaattttgctgtttt
tcaaaaaaaaaagtagtttgttgtaatattttgacttttttcaaatatta
atttttttgatttgaaatttttttaatcgacaaattttttttactctttt
gagaaaNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNTTGATAATTTGCTTGAATTATCTGTCAATTTTCAGTCTGA
AAAACTAACAATAGTACCCCTCTCttggtctaatctgtaaaatttaagat
tttaggggtggtgtcccgattttttacagcaaaaatgaagtagttcccgg
tactaaatatgggtgggtggtcctaaacaaaattttagtaaaaaatcaag
ttagtaccctatgggttagtaccctgcctctgtACCCCCCCTGGTGTGGG
GAGAATCTGTGGAGTTTCCCGCTGGCATTTCCGAGGCCTCGTTGGTATGG
GGTGGGGGGTCTCTAGAGTTTCTCGCTGGCATTTCCGAGGCATCACCTGG
TTCTTAATCTTAAACGACTATCCTATTGACCCCCTTTTTGTAAGTAACCC
GTGGATGGAAATTGTGACTTCTTCAACATCAAGGGGGGgggtttgagata
ttttttctggaaataacCAAATGCAAAGCAAGGCAAAGCATCACGAAAAG
GTTGGTTCAAGTTGATTCATCTCTAAATAACTTTCGTTATCACAGGATCA
AGATCCAGGAGCATTTGGAGATGGCTTGATCAAAACATCGAAAGCAGCTT
TGGCAACTAGATACACTTTGTTACCATACCTCTATACTTTGCATTTCGAA
TCTTTCATGACTGGATCGACTGTCGCTAGACCAC

Gene-mRNA-Prot

The following transcript feature(s) are a part of this gene:


Feature Name	Unique Name	Species	Type
TCONS_00042117	TCONS_00042117	Clytia hemisphaerica	transcript
TCONS_00042118	TCONS_00042118	Clytia hemisphaerica	transcript
TCONS_00042119	TCONS_00042119	Clytia hemisphaerica	transcript
TCONS_00042120	TCONS_00042120	Clytia hemisphaerica	transcript
TCONS_00042121	TCONS_00042121	Clytia hemisphaerica	transcript
TCONS_00042122	TCONS_00042122	Clytia hemisphaerica	transcript
TCONS_00042123	TCONS_00042123	Clytia hemisphaerica	transcript
TCONS_00042124	TCONS_00042124	Clytia hemisphaerica	transcript

The following polypeptide feature(s) derives from this gene:


Feature Name	Unique Name	Species	Type
TCONS_00042121-protein	TCONS_00042121-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0003218	supercontig	sc0003218:649..12832 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.19	0.87	0.65	0.65	2.1	2.59	20.23	18.63	57.96	53.75	35.49	24.38	46.86	44.6	163.25	233.62	70.66	84.32	126.72	114.86	12.73	13.57	26.33	34.48	41.66	25.99	25.44	21.29	43.2	21.22

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XLOC_025998 (gene) - C. hemisphaerica