TCONS_00042110 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042110
Unique NameTCONS_00042110
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length370

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042110 ID=TCONS_00042110|Name=TCONS_00042110|organism=Clytia hemisphaerica|type=transcript|length=370bp
cgGATGGCGCgagagagaatttttttcatcttgaaaagaattttcattac
aatggcttctttcgaatctttttgtggGCAGGAACCCAAAATGGCggaaa
aaaacaaatagagAAAAAAGCATGCCCAAACATTTTCGGCAAGacgaaac
tttttctttctgtctctttaaactttttaaagtgaTGCATTTTTAATAGC
GATCAAACAAACAGACATAAATTACACAAAACTTACTGTTTCTCTAGctt
tttttacaactttatgTTTTCAAAGGAAACTCTTGAAAAATTACGATTTT
TGTATGAATGAATCGCGGATTTCCCATGTGACGCTTGTGAAAGAAGTTCT
cgcttttttgttttgaaaaa
Run BLAST on NCBI

transcript from alignment at sc0003212:600..969

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042110 ID=TCONS_00042110|Name=TCONS_00042110|organism=Clytia hemisphaerica|type=transcript|length=370bp|location=Sequence derived from alignment at sc0003212:600..969 (Clytia hemisphaerica)
tttttcaaaacaaaaaagcgAGAACTTCTTTCACAAGCGTCACATGGGAA
ATCCGCGATTCATTCATACAAAAATCGTAATTTTTCAAGAGTTTCCTTTG
AAAAcataaagttgtaaaaaaagCTAGAGAAACAGTAAGTTTTGTGTAAT
TTATGTCTGTTTGTTTGATCGCTATTAAAAATGCAtcactttaaaaagtt
taaagagacagaaagaaaaagtttcgtCTTGCCGAAAATGTTTGGGCATG
CTTTTTTctctatttgtttttttccGCCATTTTGGGTTCCTGCccacaaa
aagattcgaaagaagccattgtaatgaaaattcttttcaagatgaaaaaa
attctctctcGCGCCATCcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025991XLOC_025991Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042110-exon-sc0003212-1491911889:600..969TCONS_00042110-exon-sc0003212-1491911889:600..969Clytia hemisphaericaexon
TCONS_00042110-exon-sc0003212-1510915933:600..969TCONS_00042110-exon-sc0003212-1510915933:600..969Clytia hemisphaericaexon
TCONS_00042110-exon-sc0003212-1575043694:600..969TCONS_00042110-exon-sc0003212-1575043694:600..969Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003212supercontigsc0003212:600..969 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.661076	0.214884	2.49501	1.95278	0.594332	0.469649	0.566612	0.795682	0	0.690029	0	0	0.146554	0.152197	0	0	0.165422	0.169553	0.234246	0	0	0.311763	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042110 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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