TCONS_00042100 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042100
Unique NameTCONS_00042100
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1170

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042100 ID=TCONS_00042100|Name=TCONS_00042100|organism=Clytia hemisphaerica|type=transcript|length=1170bp
aTCAGatcattaaaaatcaaattaaaataaatcaaaatggaATCACAAGA
GCTTATTGAAATCCAGGAAAATGAACCAGTttctttcataatttcaaatg
gGAAGACTTACGTTCGTTCTGGTGAGGGGCCGATTCTTCGGGCTTTCTCT
TTCGTAATGAGAAAAGTTggctttttaaagaaaaatgataGTTTGAAAAA
GGTTCATTGTGCTTATGTTATTAGTGGGCAGGAAGTTAACTCCAACGAGA
TCATcgaaagaactATTGTGCTGACATCCCTTGACTTCAAATCTAAAGAT
ATCTTTTGGAAATCTCTCGAAGAGGTTGAGGATATCTCAGTCCACATATA
CGACGTTGTAAAAACTAATATTATGGATAGTTTTTACAATTATTTGGAGT
CAATGATCGATCGTAGTGAATTAAGGGAATACAGGCTTGCTCCCTTTATT
GGCTTCCAGAATGGTGTATGGGTACTTTCTGATAAGattcacaTTAAAGA
TGGAATTATCCTAtccaaagttcaaaaatctCACATCCTTTCCAAGGAAT
TGCAAGGTTGTCAACTCGAAGTAAAAGAGAAACTCTTTACAGATAAAGAG
TATTTTGCTGGAAAGTTTGGAAGTATATTATCATTGACAAAACATTACCG
ATGTAATCGAGATGCTGTGATACAAGCAATCTCATTCACATTGACACGGC
TCTTGAGCGTAATGCACCACGAAACGCTTGCAGCTGAATCAAAGTATGCT
GTACTTGCAACTGGGGATAAGTCTGTTGGGAAGTCTTCCATTCAAAAATT
GGTAGCTCACGGCCAAGGAATACCTTCAACCAGCCATCCTTTTGCTGCTG
CTGGTGGTGATGGCAGTGGTGCTGGAACAACTTTGCTGGACACACGAATC
CAAATTATTACGTGTGAAGAGGGGGAAGACTTCGACAAAGTCGTAGACAA
AAGGGCTTTGGATAATGATTTGACAAAATTGGTTGAATCAAATCCTGGAT
TTCTCATCGCCTGGTGTACCTGGCACAATGATATGGTTTGTAAAGCGATG
GAAAGATTTGCAGACAAAGTTGCCAATGAAATTATCAGTTCACGCAACGA
CATTAAATCTCGCTTGTTGGACGCCAAGCGCGACAACGTGATAATTGCTT
TCCTGACAAAAGACAATCAG
Run BLAST on NCBI

transcript from alignment at sc0003208:7983..11972-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042100 ID=TCONS_00042100|Name=TCONS_00042100|organism=Clytia hemisphaerica|type=transcript|length=3990bp|location=Sequence derived from alignment at sc0003208:7983..11972- (Clytia hemisphaerica)
ATCAGATCATTAAAAATCAAATTAAAATAAATCAAAATGGAATCACAAGA
GCTTATTGAAATCCAGGTAATTTTAATTCATTAAATCTTTCTCTGAAAAT
TGATTGTGCAGTTAGTGTAGTTAAAGATGTTACAGTGTAGATGTTACAAT
GTAGATGTTATGTCGATTGTTTTAATAGTATATTTTCTTGTTTCAGGAAA
ATGAACCAGTTTCTTTCATAATTTCAAATGGGAAGACTTACGTTCGTTCT
GGTGAGGGGCCGATTCTTCGGGCTTTCTCTTTCGTAATGAGAAAAGTTGG
CTTTTTAAAGAAAAATGATAGTTTGAAAAAGGTTCATTGTGCTTATGTTA
TTAGTGGGCAGGAAGTTAACTCCAACGAGATCATCGAAAGGTAATTTTTT
TTTAAATCTTTAGTGAAATCTTATTACTGTCATTGAGGTGTTAATTCCTA
TCTTCCCCCTCCCCTTATAAAGAGGAGTACCAGCAGTCTATATTTTTTAA
GACAAGTAGATAAAGCATTGAAGTCTTATTGAATAAATGTAATTTATTTT
TTTCAGAACTATTGTGCTGACATCCCTTGACTTCAAATCTAAAGATATCT
TTTGGAAATCTCTCGAAGAGGTTGAGGATATCTCAGTCCACATATACGAC
GTTGTAAAAACTAATATTATGGATAGTTTTTACAATTATTTGGAGTCAAT
GATCGATCGTAGTGAATTAAGGGAATACAGGCTTGCTCCCTTTATTGGCT
TCCAGAATGGTGTATGGGTACTTTCTGATAAGGTAAGAACAATATCCCAA
GTAGGAATTTTGGTACTGAGTGTATCTCACAATTATTTTTTTGAAGTTAA
CTCCTTTACATTGTCTCTTTGATAAAAAAATTTCCATACTGAGACCTCTG
TGATGAAGTATGATTTTAAAAGTAGCAATATTTCTCTCTTCACCTCTCAT
TTCTCACCAAACTTTGCTGCACCTGGATTCGCCAAAATTAGCCAAAATTA
AATATTTTGCTACATCATCAAAAATAAAATTCTTAGTAGTTTGCTAAAAT
AGTTCATGAATATCATCAAAATTGCTGAAAAAGCGCAGAATATTCTTTCG
CCAAAATTACTTCCAAACCAAAAGATTTTACCATTCACTAAAATGAGTTA
TTGGCAAAATGAAAGATTTCATGTCTTCAAATTATTTATTTTATAGATTC
ACATTAAAGATGGAATTATCCTATCCAAAGTTCAAAAATCTCACATCCTT
TCCAAGGAATTGCAAGGTTGTCAACTCGAAGTAAAAGAGAAACTCTTTAC
AGATAAAGAGTATTTTGCTGGAAAGTTTGGAAGGTATCTTTTCTCTTTTT
ATTCAATTTACTAATACCTTTTCTGATGATTGAAAACAAAGAGATTTTTA
CAAGGAAAAAAAGGAAAATAACCATCAGGGCTTTTAGAAAATTAGTAAAA
AATGATAAAGCCTTGCCCTTGCCTGAAATATTTCAAACATTATTTGTCCC
CTGATTCCCTCAAGGTATTGTTGTCTATGAGAAAATGAACTACTTTGTCT
GAAGCTGTATCCAGTTGTTATTTTTTCCTTTGTATAGTATATTATCATTG
ACAAAACATTACCGATGTAATCGAGATGCTGTGATACAAGCAATCTCATT
CACATTGACACGGCTCTTGAGCGTAATGCACCACGAAACGCTTGCAGGTA
TAGAAATACTATCCCCTTTTCAATTGCCACTAATCTCAATCAAAACTCCA
TTAGTAGAGGTCACTATTTGTCATCAAAATTTGCCTTGTCTGGGGGTAAT
TTGGTGTGTCCAGGGGGCCAAAAGTCACCCTGTCCGGGGGTAAATCACTA
AAAATTGTTATATCCTCCACCCCCCATGTAAANAGTCACCCTGTCCGGGG
GTAAATCACTAAAAATTGTTATATCCTCCACCCCCATGTAAATTTTTTTT
CTGGAAGAGCCCATTGACTTCTTTATATCTATGATTTAGATAATTATGAC
TGAGAGTAGTACTTACACATTTTTTAGCTGAATCAAAGTATGCTGTACTT
GCAACTGGGGATAAGTCTGTTGGGAAGTCTTCCATTCAAAAATTGGTAGC
TCACGGCCAAGGAATACCTTCAACCAGCCATCCTTTTGCTGCTGCTGGTG
GTGATGGCAGTGGTGCTGGAACAACTTTGTAAGTTTGTCTCTTTAAAATC
TTTTAAGCAGGGAATAAAGTTATTTACTTTTAGAAGGTATTGTAGGTAAC
TTTTTAGTACTTTGAAATTTTTGCGCAATTACACAGACGCCCGAAAATTC
CTAACCTACATCTTGGGGACCATGAATAAAGCTTTCTGTTTTCAAATATA
AAATGCACAATCAGACTGATGATTTTTTATTTCTTTTACTTAAGGACAAA
ACAATTACAAATATTAGCTTTGTCTAATATGGTCATTATATTCAATGAGC
TAGAGATTGCTTCGCCAATGGTTGGAAAGGCATTAAACCAAGCTCACGAC
AACTATGGGTGTCATTCAGTTGGTCGTGGAACACTTAAACCGAAAGCATC
TCTGCTCGCCTCGTCAAATCAACTGATACCACACATAAAGTAATTATCTA
ATTTAATTTTAATTAAATACGTTCTCGAACAGTCTTGACTACTTTAATAC
AGTCATTTTACATTTTTTTACATTTTTCCATTCACTAGAGGGATTCAATA
TTCTCAACTTTAGTTGAGTTAGAATATTGTGTGTATGTATGTAACTGTGT
CTGTCAGTCCCCTCAAAGCTTTGGGGCAAGCCGAAGACTTTTTTTTTTCA
TTTTTAGGGTGGTCACAAGTTTTAGCCCAAAACGAGGTTAAAAACTTTGG
GCCAGGCTGGAGACATAATTATCTAATATGATTTTCATATTGCTAAAGTT
TTCTACGTTTGATCCTTGGGTGTGGATTCAAATTAGCTTGGCTTACATGG
ATTTTACAATTGGGCCTACGAATGACTTTAAAGATACTGAAATTGTGTCA
GTGCGGTTAGCAAGTTAAAGAGTAGAATAAGTCATTGGTCAATTTTCTTT
AGGCTGGACACACGAATCCAAATTATTACGTGTGAAGAGGGGGAAGACTT
CGACAAAGTCGTAGACAAAAGGGCTTTGGATAATGATTTGACAAAATTGG
TTGAATCAAATCCTGTAAGTAATCATTTTATTTGTTTTCGAAGGCTTTTA
CTTAATTCTATTAAAATCACATTGAAAACAGAGTTTATAGAAAAGAATGA
GAGTATTGGTGATTTACTCTTTTGAAAATCATAGGTGAAGAATTATACCT
TAAGGGAAGAAATTTTTGCGGGAATTTAATTTCGCGGTTGATCAAATTAT
TTTTTTTCGCGGGAATTTAATTTCGCGGCTCAGCAATTTTCGAAAAATTC
GCGGGAATTTAATTTCGCGGTTTTAGGCAAAATCCGCGAAAACCGCAAAA
TTTTGTTTCTGCAAAAATTTCTTCCCTTAAGGTAATGGTTCACAGTGCTC
AAGCGGTGTGTTTAATGACAACCTGTGACATGGCAACACCAAAAAATATT
TCATGTTTTATTCTCTTGATTTTAGGGATTTCTCATCGCCTGGTGTACCT
GGCACAATGATATGGTTTGTAAAGCGATGGAAAGATTTGCAGACAAAGTT
GCCAATGAAATTATCAGTTCACGCAACGACATTAAATCTCGCTTGTTGGA
CGCCAAGCGCGACAACGTGATAATTGCTTTCCTGGTTGGTGATTTTTTAT
TGTGCTTTTCATTCTTTTCTTTTTCTGAATCTTTGTGGAAGTCCTATGAA
AGTTCGTTAGTTATTTTGTCCGTTCGTTACTAGTTTGCTCATATTCGTTA
CCAGCTTTTCTCAAAATTGGCTCATTCAATTTTTCAGATTTTTTGCACAA
AGATGCTAGTTATTAACCCTTTAATAATACAGAGCTTGATTTTCAGGAAA
AATTTTTTTCAAATTTCTACAATAGACAAAAGACAATCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025983XLOC_025983Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042100-exon-sc0003208-1575043694:11907..11972TCONS_00042100-exon-sc0003208-1575043694:11907..11972Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:11583..11776TCONS_00042100-exon-sc0003208-1575043694:11583..11776Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:11191..11416TCONS_00042100-exon-sc0003208-1575043694:11191..11416Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:10640..10776TCONS_00042100-exon-sc0003208-1575043694:10640..10776Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:10276..10385TCONS_00042100-exon-sc0003208-1575043694:10276..10385Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:9795..9945TCONS_00042100-exon-sc0003208-1575043694:9795..9945Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:8809..8920TCONS_00042100-exon-sc0003208-1575043694:8809..8920Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:8239..8397TCONS_00042100-exon-sc0003208-1575043694:8239..8397Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1575043694:7983..7997TCONS_00042100-exon-sc0003208-1575043694:7983..7997Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:11907..11972TCONS_00042100-exon-sc0003208-1510915933:11907..11972Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:11583..11776TCONS_00042100-exon-sc0003208-1510915933:11583..11776Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:11191..11416TCONS_00042100-exon-sc0003208-1510915933:11191..11416Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:10640..10776TCONS_00042100-exon-sc0003208-1510915933:10640..10776Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:10276..10385TCONS_00042100-exon-sc0003208-1510915933:10276..10385Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:9795..9945TCONS_00042100-exon-sc0003208-1510915933:9795..9945Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:8809..8920TCONS_00042100-exon-sc0003208-1510915933:8809..8920Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:8239..8397TCONS_00042100-exon-sc0003208-1510915933:8239..8397Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1510915933:7983..7997TCONS_00042100-exon-sc0003208-1510915933:7983..7997Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:11907..11972TCONS_00042100-exon-sc0003208-1491911889:11907..11972Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:11583..11776TCONS_00042100-exon-sc0003208-1491911889:11583..11776Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:11191..11416TCONS_00042100-exon-sc0003208-1491911889:11191..11416Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:10640..10776TCONS_00042100-exon-sc0003208-1491911889:10640..10776Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:10276..10385TCONS_00042100-exon-sc0003208-1491911889:10276..10385Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:9795..9945TCONS_00042100-exon-sc0003208-1491911889:9795..9945Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:8809..8920TCONS_00042100-exon-sc0003208-1491911889:8809..8920Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:8239..8397TCONS_00042100-exon-sc0003208-1491911889:8239..8397Clytia hemisphaericaexon
TCONS_00042100-exon-sc0003208-1491911889:7983..7997TCONS_00042100-exon-sc0003208-1491911889:7983..7997Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003208supercontigsc0003208:7983..11972 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.858023	0.428748	5.63713e-08	0	0.953475	0.983593	1.19832	1.00536	0	0.39188	0.869693	0.906725	0.853045	0.317067	1.31041	0	0	0.666982	0	0.245095	0.402849	0	0.299714	0.558777	0.746492	0.516511	0.00352605	0.162073	0	0.223111
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042100 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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