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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042093 ID=TCONS_00042093|Name=TCONS_00042093|organism=Clytia hemisphaerica|type=transcript|length=665bp
tatcaaaatcaatttcggcGATGTGTGCAGCCTTATCTCGCTTGCTGCAT
TGACACCTGAATTTGATGTATTTCTGATGAAtggaaattggaaattttga
ttttcttgttttAGATACGATTGAACTGCTGTTTCCAAGGTGATCCCGTT
GCTAAGGAAACAAAAGAACCAATGATTGTTTGCGATGATTTGTACACACA
GGGAATGACGGTGGTTCAGAACAGTAGCATTAAATTCGTCGAGCCAACGG
AAGGtaaaaacattgaaacaattGAGAAGCTACCACCGTTATTCATTTGG
GTTGATTTCAAATCGAACTTCAATGAAAAGATCAATTGCAACGTTTATTT
TGATGAGGAGCGGTTGACATCGTTATTCAAACTACCTTTCAATACCAAGA
GACCAATGACAGATTTCGTTTATTCAAGACCTGCTGTTCTATTAACAAAT
CCATGCCAATAAACTAGTTTGATCTTCTTGAACGAGAATGTTTTCGTATT
TGCTGTTTTATATTGCTAGTTTAGGTCTCTCTGAATGTTTAATTTTAGGC
TTAGGAGTCAGTTTTTAAAGAAGATGTTCTTACTTGATGATCATGcttga
atgggcttttccagaaaaaaaatttacccctactgttgaggatattgatt
tttcgaagtatcgaN Run BLAST on NCBI transcript from alignment at sc0003204:42..2364+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042093 ID=TCONS_00042093|Name=TCONS_00042093|organism=Clytia hemisphaerica|type=transcript|length=2323bp|location=Sequence derived from alignment at sc0003204:42..2364+ (Clytia hemisphaerica)
tatcaaaatcaatttcggcGATGTGTGCAGCCTTATCTCGCTTGCTGCAT
TGACACCTGAATTTGATGTATTTCTGATGAAtggaaattggaaattttga
ttttcttgttttAGATACGATTGAACTGCTGTTTCCAAGGTGATCCCGTT
GCTAAGGAAACAAAAGAACCAATGATTGTTTGCGATGATTTGTACACACA
GGGAATGACGGTGGTTCAGAACAGTAGCATTAAATTCGTCGAGCCAACGG
AAGGGTAAGTATCTAGGTTTCCATCTAATGACTTGGGCTCTCCAAGCGAA
ACTCAATGGTACTAGTAGAAGCAGCCCCAGCCCCTCATCAGTTCTTACGT
TCAATTTTTTCTCATTAGCTTGCTCCCATATTGTTACTTAAAAAACGTTG
CAAGAAGGTGTACAAAGACAAAGTCTCTCCCATCACGCTTCTGAATAGTG
GCAAGGACATTTGCAATTCATGAGTATTTCTTTCTCCTCGAGTCGTGTTG
TGGAAGAGTCGTACCCAACCTCTAAGTTTCTTTACTTAGCATTTAGTTTG
AATTATAGCTAGTGTTGCTTCATCNCATTTAGTTTGAATTATAGCTACAA
TATCAGGGACAAAagacttggcacaaaagggaaattcaccggggtttttt
gaaaccacaatcgatttgtaagtgctctaaagtaggttcgaagggtagag
ttttaacgctagacttaaatatagcctagaaaccattaaatccctcccag
atcgaaatactcgatgaaatcaagttgaaggcctaaaaattgacattctc
gctcgaacttcaattttcgaaaaattgcaaattatccaaaagtgccaata
tattatgacactGTTTGTAGTGTTGTTTCATCAAGTTATAGTGTTCTCTT
CAGGAATATGTACTTTTCCTTTGTCATGTTCCCATGTAGAAACTTCGATC
AAGGGAATTACactaatagaccttatcggagtttttgatttttctaaaac
agcgatgtattgtgggattgtttgtAATAACcctgaaacaatcccacaat
gcattggttttttagaaaaatcaaaaactttgatATGANTACCcctgaaa
caatcccacaatgcatcggtttttaaaaaaaactttgatatgACTTATTA
AGCTGACATGGTTCCCACATGGTAGCTGCATGGTAGCAAAAaatagtgca
cacttaaagcgaatcGGTTTTAGTTGTAACTTAGCctcaaaatgtatttt
tattgttaaatttgacattttatcttttcatgcagtaaaaacattgaaac
aattGAGAAGCTACCACCGTTATTCATTTGGGTTGATTTCAAATCGAACT
TCAATGAAAAGATCAATTGCAACGTTTATTTTGATGAGGTAAGAATAAAT
AAAGTCACTGAACTTTTATAAACCCTATATctaccatctttgatcggagt
tttgaAAAGTGGACTACCgtttaaaaatttcttcaccTACACTGAGTAGT
GATGcaattagggtaccaatttcaaaagaCTCTGATTAATAACTTTGTCT
GACTGGGTGAGAATTTGTTTGCTAACGTGAATGATTTATGATGTGTCTAT
TAGGATGTCTGCATTTCTGAAATAGTTTTTGTAATAGCGAACCATTAGAA
GGTAGGCTTTGCGTAtccctgaaataatttttatatagcaaaacatatca
aaaattACTGGTAGCCTGAATGATTAGGATGACGGGTTCTTTTCGACAGC
GCAGGATTCTTTTCGACAGCGCGGGATTCTTTTTTATTAAACACACTGTT
AAGTTGTTCAATGTAcactaatttgaaaaaatatattcattATATGCGAT
TCAAGATGACGTCATGTTTTCTAACGGAAGTACCCGAAAAAAGCCGAGGT
TTAATCTATTTTTAGTAGTCAAATTCTGGATTCTTTCGGTTGTTTCCGTT
AGAAAAATAACTTACGCACATCAAGAATTAGGAATGAGCTGaagaaaata
aatcttttattCTAGGAGCGGTTGACATCGTTATTCAAACTACCTTTCAA
TACCAAGAGACCAATGACAGATTTCGTTTATTCAAGACCTGCTGTTCTAT
TAACAAATCCATGCCAATAAACTAGTTTGATCTTCTTGAACGAGAATGTT
TTCGTATTTGCTGTTTTATATTGCTAGTTTAGGTCTCTCTGAATGTTTAA
TTTTAGGCTTAGGAGTCAGTTTTTAAAGAAGATGTTCTTACTTGATGATC
ATGcttgaatgggcttttccagaaaaaaaatttacccctactgttgagga
tattgatttttcgaagtatcgaN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042093-exon-sc0003204-1491911889:42..295 | TCONS_00042093-exon-sc0003204-1491911889:42..295 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1510915933:42..295 | TCONS_00042093-exon-sc0003204-1510915933:42..295 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1575043694:42..295 | TCONS_00042093-exon-sc0003204-1575043694:42..295 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1491911889:1327..1429 | TCONS_00042093-exon-sc0003204-1491911889:1327..1429 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1510915933:1327..1429 | TCONS_00042093-exon-sc0003204-1510915933:1327..1429 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1575043694:1327..1429 | TCONS_00042093-exon-sc0003204-1575043694:1327..1429 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1491911889:2057..2364 | TCONS_00042093-exon-sc0003204-1491911889:2057..2364 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1510915933:2057..2364 | TCONS_00042093-exon-sc0003204-1510915933:2057..2364 | Clytia hemisphaerica | exon |
| TCONS_00042093-exon-sc0003204-1575043694:2057..2364 | TCONS_00042093-exon-sc0003204-1575043694:2057..2364 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003204 | supercontig | sc0003204:42..2364 + |
Blast
The following BLAST results are available for this feature:
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