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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042083 ID=TCONS_00042083|Name=TCONS_00042083|organism=Clytia hemisphaerica|type=transcript|length=1516bp
CAATCAACGTATCTGGCGGATGCACTTTGATTTTTGATAACAGTTACAAG
TTGATTAATATTCAATTACGCAAATCTAACAGACAATGGAATGATTTTTC
GCCAAATGTTGGACCGCATCATCACAATTTCATTACAGTTGATAAATTGA
AGCTTGGAAGTTTTTATGCGTTTCGTGGCATTTTTTTGAACCAGGCAGGA
GAAGTGGTCATCTTCGAAACAAAAGAAGACTTACAAATCAAAGAAATCAA
AGAAGAAGATAAGTTGGTGGTATCCGGTCAAAACTATGTgattcaagatt
ttgaaaacttaagGAAAGTGACATCAGCGAGGTTATTAAAGTCGAAATAC
GAAGTGGTGACGAGAAATGGGATCTTGTTGACGAAAATTGTTACGAGTTT
CGAGACCAGTCACTTGATGGTGCTAAGAATCTAACGGTTGGTGAATTGGA
AGAAAATGAATGTTATGATATGCGTATAACCGTCAGAAAATCCGATGATG
GAGTGGTTGTTTACATTAGAGAAGCTATTATAACAGACGAGTCACACTCA
TTGTCCATGTATAATTTGGTATCTGTAAAAACACATCCTCTTGGTTATTC
TGAAGACTCGtatcaagaaaatgttttggcAAATAAGAAGAAAGTTATTC
GATTCCAAACTGGTGCTGGTCAGGAAAAACGATCATTGCAAAGCATTGAC
AGTGCTAAATATGTTAACACCAATTTTCCTGATGAAGATATTGTCCTTCC
TTATTTGAACACAATGGAACCACAGTCCTTTAGAAGTGTTTTAGCGAAGA
AATTCATGGCTATCGGGGAGAAACTCCCTGGAAAGTTCTATCTGTTGTCT
TCTTTCAATGCCAGAAAACATTTGGAGAAGACACTTGGtgtaaagaaaaa
atgtatcGAAGAGCAGTTTCGATATCTGTCTCTGGATGGcaatttaatga
tattttatcCACCCTCATACCCTGCAGTAGTCCTAATGACATTACCAGGA
TCTGAAAGAGAAAGCCTCCATCAGCTGATCTTCAGAGCAGATGAGAACCT
AAAATCGTATCTCGCGTTGCACGAAGATCTTCTCCAAGTCAAAAGATTTG
CCATTATCAATGTCATTGCGGCTGTTCATCACAAAAGAGAAGACGTCGAG
AAGTCCCTACATTGTCAAGATAGCTTACCATTCATGTTATTTTCGGACTT
TGTCTACGATTCTCAAACTTGGTGGAATAAAATTGAGGAATTCTTGGGGC
AAATAGCTAATGACCTTGAGGAAGCTGACCAACAACGCACATTCGAAATT
TCTGCACGATCGATCCTTCTCGAAGCATTGATCGATGAAAACTTTCCAAC
TCTTTTTGCCAAAGATGAAGAAGTGTTCTGTAAGAAGATCATGAACAGAG
CACAGATTGACGTCTTGTTAGACAAACAACATAGTATCGAACGTTAAATC
AATGATTATCATGTTTTTCGTTTTAATCGTTCAATCAATGGTTTTAGTTG
ATTTAATGATCAAAAC Run BLAST on NCBI transcript from alignment at sc0003197:1..5438- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042083 ID=TCONS_00042083|Name=TCONS_00042083|organism=Clytia hemisphaerica|type=transcript|length=5438bp|location=Sequence derived from alignment at sc0003197:1..5438- (Clytia hemisphaerica)
CAATCAACGTATCTGGCGGATGCACTTTGATTTTTGATAACAGTTACAAG
TTGATTAATATTCAATTACGCAAATCTAACAGACAATGGAATGATTTTTC
GCCAAATGTTGGACCGCATCATCACAATTTCATTACAGTTGATAAATTGA
AGCTTGGAAGTTTTTATGCGTTTCGTGGCATTTTTTTGAACCAGGCAGGA
GAAGTGGTCATCTTCGAAACAAAAGAAGACTTACAAATCAAAGGTATTCT
GATTTTCAATGTTGAAAGTTGATTCGTTTTATAGATTCGTAACCGTCTCT
GGAGTGAAATAATTAAATTACCAGTAAATGATTCAAATTGTTTGTAAACT
AAAGTCGATCAACTTTACACGCTAACTTTTTTAATATATGTAATGTTCAT
GATGAAATTAGCCTAAACTGTCCTATCAATATGCTGATCTGGAATTTCCA
TTTCGAGCTCTCCTCCAGTTCTCCTCCAGTTCTTGATACAGATCTCTGAG
AAGCATCTTTTTTTATTACAGAAATCAAAGAAGAAGATAAGTTGGTGGTA
TCCGGTCAAAACTATGTGATTCAAGATTTTGAAAACTTAAGGTACATGGA
ATCACATGATATTTTATCCCAGTTTAAGACGATATCTTGTTTTTCATCGA
TTTACAAATATGACGTTAATTTTAAAGGACTTGTGCTAATCTAAGCTAAT
AGCATGGAAATCAGAATCATTTTACCGACAATGATACACGTGTTTTTTAT
AAGCATATTAAATAACCCGAAAAACTTGCTCGAAGATGCTGAGATCCGAA
AGGCTGAAAAATGTATCCCAAGCATAATTTTAGGGAAATTTAGCAAATCC
GTTAAAAAACAGCCAAAAACAGCCAAAATTGGAATTACTTTTTTCGTAGG
CTCAAGGCAATGCTTATAGCATATGATTGAATTTTTGCCATATCTGAGCC
TACATATGCTTTTTAAAGTGCAATGTTAAAAAAATGATGAGATTTAGAGC
TTTAGTAAGAAAGAAAGTGTATTATTCTAAATAATTACATTCAATATATT
TCTTCATTGCTCAGGGCTGATGTGATATATGTCGATGACAAATCAATCTN
ATATATTTCTTCATTGCTCAGGGCTGATGTGATATATGTCGATTACGAAT
CAATCCATTTCATTTTTGACAAGGAAAGTGACATCAGCGAGGTTATTAAA
GTCGAAATACGAAGTGGTGACGAGAAATGGGATCTTGTTGACGAAAATTG
TTACGAGTTTCGAGACCAGTCACTTGATGGTGCTAAGAATCTAACGGTTG
GTGAATTGGAAGAAAATGAATGTTATGATATGCGTATAACCGTCAGAAAA
TCCGATGATGGAGTGGTTGTTTACATTAGAGAAGCTATTATAACAGGTGA
GTTGTTACCTCAATTTTACGTTATTCCATCATAGCTTGTGCCCTATTGCT
TAACCCTTCGTGCATCTTGGTGAAGGGGGAGGCGGAGTATCTTAGCAACC
TATAAAATGTTTATCCGATTGACCTGAAATTTGTGAGGCATCTCCAGGTA
ACATGTATTTTTGGGGCAGAGGATCTATTTTTGCCACTTGCTGGTATCGT
GTATTTTACAGACTGACCAAAAATTGCATTTTTGCTTAAATCTGCCCTAG
GTTACTGAATTTGAAAATGTCATTTTTGACACTTATGATCCTTCTTACAG
CCAAAATTTCAGCAAAATCAGACCGCGGTTATGCTGAAAGTGAGCAATTT
TAAGTAAAAACGTACCGGTCTGTTAAATATCATGATGAGGTCGTTTGAGT
ATAGTGTACGTAGGATCTCTGGAGTTAAGCTGGCGAAACCTCGCTTGATG
ACCCCGATCATAGAGTTAGCTTTGTTGACTTGCTTGGCTATGTCTTCTTC
AAATGATAGTTCAGCATCAATCAGTATACCAAGGTCTTTTTCTTCGAATA
CATGCGCAAGACGATACGGGTAAGCATGTTTGATGTTTGCGAATTTACCA
AGCATAAGGACGTGGCATTTGTCGGGGTGGAATTTCAAGAGCCAATCTTC
AGACCATTTTTCGAGTTTCTCTATATCACTTTGGATGATGAGAGAATCAG
TGATAGAATTGACCTCCTTGAAAATCTTCGTGTCATCTGCGAAAAATAGT
AGAGATGAAATAACTTTGTCAGGCAGATCATTTATATACAAGACAAAAAG
TAATGGTCCTGAAATACTCCCTTGTGGTATTCCACTCACGACTGTGTCAA
CTTTCGATTTTGATTGGCTCATCTTGACTAACTGCTTTCTTCCACTTAGA
AACGAGATGTAATCCTATTCTTTATTGAACCGACTATACTGTAACCTTCT
AACCTTTTGCAGAGTCTGTGATGAGGCATATTATCAAATGCCTTGTCAAA
GTTGAAATAGATGCAGTCTACAACTTTTTCATCAGATATAATTTCACAGC
ACTTATAGATATGATTTAAAAGCTGGGTAACAGTGGAGCGTCTACTGATG
AAGCCTTGCTGCTTATCCAAAAAGAGGTGCAGGTTTGTCAGGTGGTTTGT
CATATGCTCACGTAAGATAGACTCCATCAGCTTGCAAACCACGGATNTGC
TTATCCGAAAAGAGGTGCAGGTTTGTCAGGTGGTTTGTCATATGCTCACG
TAAGATAGACTCCATCAGCTTGCAAACCACGGATGTTAAGCTCACTGGTC
TGTAGTTAACTGCCAAGTTATGCCCTTCTTTGTTTTTATAAATGGGTGTG
ACGTGAGCAAGCTTCCAAGCTTGAATCCCTTCAGCCAGAGTCTTCATCAA
TAATCTTTGAAAGGGGCTCAGAAATTTCATCGACAAGTTCCTTTAGCATC
CTTAGATGTATTTCGTCAGGACCAAATGATTTGTTTGAATCCAGTTTCAT
GAACCTCCTACTTACCATATCATTAGTTATAAAGATGTCAGCAATATCAT
GCTCTGTTCTGCGTGGGAATTCGGGAAGATCTCCGTCGGGCTCCATGTCG
AAAACACTGCACAATTGTTGTTGCAGAGTGTTTGCTTTCTCGTGATCTTC
GTGTCGAAGTGAAGACTTGTCCTTTTGCTCAAGAAGTGAAGAAACTCCTG
TCGAAGCTTTCATCTTACTTCTTACATGTGACCAAAAAACCTTAGGTTTG
GTTTTTGCTCTATTGCAGATGTTACGCTCGTAGTTCCTATGGGCTTGTGT
CATGATCCGGTTGACTCTATTTCGTGCTGTTACATGGGCTTTCCACGGGG
CACGAGTCCATTCCTTGTGCAATCGACACTTTTCACTCGCTTCTCTTCGC
AGATCTTCTCCTATTGGTATCGATCCCTTGGATCGCCAACTTTGACAATC
GAGTTCCTTAAGTAGGACGAATTTATTTCTAAGCTCTAATATTTTTGATC
GAATTCCAAATTACCTCTAACGATTTATTTTCCATCTCATTGAGTAACTC
TTTTGACCAATCGTTGACTACCAGAGACTGCTTCATTGCACAATAATCAC
TTTCATCGAAGAAATTACTCTTAGAATTTATGTTGCGCTTAGTATAACAA
GCAAATGTGAAGGCCAAGACACTGTGATTACTCAACCCCAGTGGACTTAG
ATATTGTAGATCACGAATTTGATTCTCTTCACTTGTAAAGATCAAGTCAA
CCGTAGAGGGATCATCTTATTCGTCCGAATGTTGGTGTCAAGTCACAAAG
TTTTCACTCAAAGAAGAAATTTTTTTCTGTTGTTGACTTTTTTATAAAAA
CACACACACATGATAGCTATTATTAGCTATTACATAATAGAACATGTCCA
TCGGATTGATAAAGTTTCAAAAATAAAGAAACAATTCAAAATGTCTGTAG
ACCAATTTTTTGATATGTTTATTACCCAATTTGAGAGTGCTGATTCCGAA
TTTGAATGTTACCAAGCTTGAATAACACGCAGTTTTTGCGTATTTTGCGA
TTTTTTGCGTTTTTAGGCAAAATTGTAAGCCCTGAAACTTCATGATTTTT
GAGGGTTCTTCAGAATCAAAAAACACCTATACCACGTGATAGAACTCTTC
AAACTGGGCAAAATTGTGATACATCAAATTCTCAACTTTTCTAGATCAAT
GATTTTGTGGTCAAAAATTGATTCAAAACAGGGAATTTCCCCACAATCTA
CATAATTTATGAAAAATTATAGCATTTTTTACCAACAACAAAATTTGCTT
TTTTCCAGTTTGTTGGAAATATGCAAAAATCTAAAGAATATTGATAGATT
CATAAGAAGTTTAACCAAAGATTCATCACAGATTTTAATCATCTGTATAG
AGATGTCATCCTAACCATGTGCTTTGTTAGTCGTAAATGTGCGAATGAGG
GCTAAGATTTTGGCTTGGTGGAGAGGTATATTGTCTATTGCTTTTGAAAA
TATTGAAAAGTGATACGACAACTTTAAAAGCTTTAGTTGTTTTTTCTTCT
CATTTCAGACGAGTCACACTCATTGTCCATGTATAATTTGGTATCTGTAA
AAACACATCCTCTTGGTTATTCTGAAGACTCGTATCAAGAAAATGTTTTG
GCAAATAAGAAGAAAGTTATTCGATTCCAAACTGGTGCTGGTCAGGAAAA
ACGATCATTGCAAAGCATTGACAGTGCTAAATATGTTAACACCAATTTTC
CTGATGAAGATATTGTCCTTCCTTATTTGAACACAATGGAACCACAGTCC
TTTAGAAGTGTTTTAGCGAAGAAATTCATGGCTATCGGGGAGAAACTCCC
TGGAAAGTTCTATCTGTTGTCTTCTTTCAATGCCAGAAAACATTTGGAGA
AGACACTTGGTGTAAAGAAAAAATGTATCGAAGAGCAGTTTCGATATCTG
TCTCTGGATGGCAATTTAATGATATTTTATCCACCCTCATACCCTGCAGT
AGTCCTAATGACATTACCAGGATCTGAAAGAGAAAGCCTCCATCAGCTGA
TCTTCAGAGCAGATGAGAACCTAAAATCGTATCTCGCGTTGCACGAAGAT
CTTCTCCAAGTCAAAAGATTTGCCATTATCAATGTCATTGCGGCTGTTCA
TCACAAAAGAGAAGACGTCGAGAAGTCCCTACATTGTCAAGATAGCTTAC
CATTCATGTTATTTTCGGACTTTGTCTACGATTCTCAAACTTGGTGGAAT
AAAATTGAGGAATTCTTGGGGCAAATAGCTAATGACCTTGAGGAAGCTGA
CCAACAACGCACATTCGAAATTTCTGCACGATCGATCCTTCTCGAAGCAT
TGATCGATGAAAACTTTCCAACTCTTTTTGCCAAAGATGAAGAAGTGTTC
TGTAAGAAGATCATGAACAGAGCACAGATTGACGTCTTGTTAGACAAACA
ACATAGTATCGAACGTTAAATCAATGATTATCATGTTTTTCGTTTTAATC
GTTCAATCAATGGTTTTAGTTGATTTAATGATCAAAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042083-exon-sc0003197-1575043694:5196..5438 | TCONS_00042083-exon-sc0003197-1575043694:5196..5438 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1575043694:4848..4917 | TCONS_00042083-exon-sc0003197-1575043694:4848..4917 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1575043694:4043..4265 | TCONS_00042083-exon-sc0003197-1575043694:4043..4265 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1575043694:1..980 | TCONS_00042083-exon-sc0003197-1575043694:1..980 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1510915933:5196..5438 | TCONS_00042083-exon-sc0003197-1510915933:5196..5438 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1510915933:4848..4917 | TCONS_00042083-exon-sc0003197-1510915933:4848..4917 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1510915933:4043..4265 | TCONS_00042083-exon-sc0003197-1510915933:4043..4265 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1510915933:1..980 | TCONS_00042083-exon-sc0003197-1510915933:1..980 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1491911889:5196..5438 | TCONS_00042083-exon-sc0003197-1491911889:5196..5438 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1491911889:4848..4917 | TCONS_00042083-exon-sc0003197-1491911889:4848..4917 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1491911889:4043..4265 | TCONS_00042083-exon-sc0003197-1491911889:4043..4265 | Clytia hemisphaerica | exon |
| TCONS_00042083-exon-sc0003197-1491911889:1..980 | TCONS_00042083-exon-sc0003197-1491911889:1..980 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003197 | supercontig | sc0003197:1..5438 - |
Blast
The following BLAST results are available for this feature:
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