TCONS_00042072 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042072
Unique NameTCONS_00042072
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length481

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042072 ID=TCONS_00042072|Name=TCONS_00042072|organism=Clytia hemisphaerica|type=transcript|length=481bp
TTCCTGTAACTTTAGGGAACTTGCTGGCGTCAATGTTACTCAAACTCAAA
GACATGGTGTAGATTGTCAGACAAAGCCAGAGGTGACCAATCCTTTACTT
GTCTATATGATTCAGATTGTGCACACGCTAGAGTAAGAGGATTGTTAGGA
AAACCTGCTGAGGAGGTTTGCGAAATGAAATATTCTGCTCTTGGCTCCGG
GCCAATATGTCATGGATCAAATCCCTTAACTGcttaagatgaaaaaaaat
taaatttgtctaTGGTCAAGGATAGTGTGAAACAAGTTTCTCCTGGAATC
ATGTATTATATACGATTTTATAAGTTACACCGCAATAATTTTgtcgattt
tcttttgtttaatttcaagtgtttctttgtaatttttgaaaaataacttt
taaaataattattttgatattcttatatttttataaGTAGGGTTATTAGT
TCCAGAAAATATAATTGTTGTGTGATTAATC
Run BLAST on NCBI

transcript from alignment at sc0003188:12699..13179

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042072 ID=TCONS_00042072|Name=TCONS_00042072|organism=Clytia hemisphaerica|type=transcript|length=481bp|location=Sequence derived from alignment at sc0003188:12699..13179 (Clytia hemisphaerica)
GATTAATCACACAACAATTATATTTTCTGGAACTAATAACCCTACttata
aaaatataagaatatcaaaataattattttaaaagttatttttcaaaaat
tacaaagaaacacttgaaattaaacaaaagaaaatcgacAAAATTATTGC
GGTGTAACTTATAAAATCGTATATAATACATGATTCCAGGAGAAACTTGT
TTCACACTATCCTTGACCAtagacaaatttaattttttttcatcttaagC
AGTTAAGGGATTTGATCCATGACATATTGGCCCGGAGCCAAGAGCAGAAT
ATTTCATTTCGCAAACCTCCTCAGCAGGTTTTCCTAACAATCCTCTTACT
CTAGCGTGTGCACAATCTGAATCATATAGACAAGTAAAGGATTGGTCACC
TCTGGCTTTGTCTGACAATCTACACCATGTCTTTGAGTTTGAGTAACATT
GACGCCAGCAAGTTCCCTAAAGTTACAGGAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025957XLOC_025957Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042072-exon-sc0003188-1491911889:12699..13179TCONS_00042072-exon-sc0003188-1491911889:12699..13179Clytia hemisphaericaexon
TCONS_00042072-exon-sc0003188-1510915933:12699..13179TCONS_00042072-exon-sc0003188-1510915933:12699..13179Clytia hemisphaericaexon
TCONS_00042072-exon-sc0003188-1575043694:12699..13179TCONS_00042072-exon-sc0003188-1575043694:12699..13179Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003188supercontigsc0003188:12699..13179 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
854.22	949.163	1146.95	1021.64	76.4903	49.5663	88.7793	77.8219	360.445	296.653	261.799	262.596	0.119925	0.264116	0.509564	0.809199	28.6914	45.1971	2.3878	0.621582	278.939	245.319	249.909	156.788	22.2789	15.1521	13.0323	15.9077	89.7452	102.869
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042072 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top