TCONS_00042071 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042071
Unique NameTCONS_00042071
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length785

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042071 ID=TCONS_00042071|Name=TCONS_00042071|organism=Clytia hemisphaerica|type=transcript|length=785bp
ATTGTTGTAGAAATTGTCGAAATTGATGTCATTAATGTTCTTAATCCAAA
GGAATCGTACGTAATCACGATCTTTCTCGTTGAGTCGAATTTGTAGAAAA
GCTTTTTCCAAATCTGCGATGATACCAATCTTCTTGGCTCGAAATCGAAG
TAACGTCCCGAAAAGTGACGAAGTAAGCGACGGGCCAGCGTGTAGACAAT
CATTCAAAGCTGGACCATCAAGAGAGGAACTGGCGTCGAACACCATGCGT
ATCTTGGTTGTTAACCTGTCCAATCGTAGAACAGGTCGGTGTGGCATATA
GTACGTTTGCCCTTCAATAGATGTATCAGGAGCGACCTCAATGATACCTT
GTTGTAGCTGATCTTTAATGATTGCATCGTAATCGTGTAACANNCTCAAT
GAATGGAAGCTGAACTTCATAACGATCTTGTTCgaatttaattttacttt
cGAACTCTTGTAAAACAACTTCCTTTGGGCTTTCAGTTCTACCCACTTCT
TCGATTTCccaaaactttttcaaagttgTATCAACATCACATGTCTGACA
GTTTAGCGTGTGTGCAGACAGAGTAACAGTAGCTTGGGTTATTGAACAAA
CTGTGTCAGTAGTGAGTGGGCCTGAGAAAATATAGCCCAGCTTAGTATCC
GTTCCGACTAGTCCCTTGGAACTACGAATAGTTTTATTCTTTACAAATTT
CCAGAAGTTATCTGCACCGATAAGAAGATCAACGCGTAAAGACTTTTCAC
AAACAAGTCCTTTGTCAGCAACTTGTAAATTTTGG
Run BLAST on NCBI

protein sequence of TCONS_00042071-protein

>TCONS_00042071-protein ID=TCONS_00042071-protein|Name=TCONS_00042071-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
MKFSFHSLXXLHDYDAIIKDQLQQGIIEVAPDTSIEGQTYYMPHRPVLRL
DRLTTKIRMVFDASSSLDGPALNDCLHAGPSLTSSLFGTLLRFRAKKIGI
IADLEKAFLQIRLNEKDRDYVRFLWIKNINDINFDNFYNN
Run BLAST on NCBI

transcript from alignment at sc0003188:5245..6029

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042071 ID=TCONS_00042071|Name=TCONS_00042071|organism=Clytia hemisphaerica|type=transcript|length=785bp|location=Sequence derived from alignment at sc0003188:5245..6029 (Clytia hemisphaerica)
CCAAAATTTACAAGTTGCTGACAAAGGACTTGTTTGTGAAAAGTCTTTAC
GCGTTGATCTTCTTATCGGTGCAGATAACTTCTGGAAATTTGTAAAGAAT
AAAACTATTCGTAGTTCCAAGGGACTAGTCGGAACGGATACTAAGCTGGG
CTATATTTTCTCAGGCCCACTCACTACTGACACAGTTTGTTCAATAACCC
AAGCTACTGTTACTCTGTCTGCACACACGCTAAACTGTCAGACATGTGAT
GTTGATAcaactttgaaaaagttttggGAAATCGAAGAAGTGGGTAGAAC
TGAAAGCCCAAAGGAAGTTGTTTTACAAGAGTTCgaaagtaaaattaaat
tcGAACAAGATCGTTATGAAGTTCAGCTTCCATTCATTGAGNNTGTTACA
CGATTACGATGCAATCATTAAAGATCAGCTACAACAAGGTATCATTGAGG
TCGCTCCTGATACATCTATTGAAGGGCAAACGTACTATATGCCACACCGA
CCTGTTCTACGATTGGACAGGTTAACAACCAAGATACGCATGGTGTTCGA
CGCCAGTTCCTCTCTTGATGGTCCAGCTTTGAATGATTGTCTACACGCTG
GCCCGTCGCTTACTTCGTCACTTTTCGGGACGTTACTTCGATTTCGAGCC
AAGAAGATTGGTATCATCGCAGATTTGGAAAAAGCTTTTCTACAAATTCG
ACTCAACGAGAAAGATCGTGATTACGTACGATTCCTTTGGATTAAGAACA
TTAATGACATCAATTTCGACAATTTCTACAACAAT

Coding sequence (CDS) from alignment at sc0003188:5245..6029

>TCONS_00042071 ID=TCONS_00042071|Name=TCONS_00042071|organism=Clytia hemisphaerica|type=CDS|length=420bp|location=Sequence derived from alignment at sc0003188:5245..6029 (Clytia hemisphaerica)
ATGAAGTTCAGCTTCCATTCATTGAGNNTGTTACACGATTACGATGCAAT
CATTAAAGATCAGCTACAACAAGGTATCATTGAGGTCGCTCCTGATACAT
CTATTGAAGGGCAAACGTACTATATGCCACACCGACCTGTTCTACGATTG
GACAGGTTAACAACCAAGATACGCATGGTGTTCGACGCCAGTTCCTCTCT
TGATGGTCCAGCTTTGAATGATTGTCTACACGCTGGCCCGTCGCTTACTT
CGTCACTTTTCGGGACGTTACTTCGATTTCGAGCCAAGAAGATTGGTATC
ATCGCAGATTTGGAAAAAGCTTTTCTACAAATTCGACTCAACGAGAAAGA
TCGTGATTACGTACGATTCCTTTGGATTAAGAACATTAATGACATCAATT
TCGACAATTTCTACAACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025956XLOC_025956Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042071-exon-sc0003188-1491911889:5245..6029TCONS_00042071-exon-sc0003188-1491911889:5245..6029Clytia hemisphaericaexon
TCONS_00042071-exon-sc0003188-1510915933:5245..6029TCONS_00042071-exon-sc0003188-1510915933:5245..6029Clytia hemisphaericaexon
TCONS_00042071-exon-sc0003188-1575043694:5245..6029TCONS_00042071-exon-sc0003188-1575043694:5245..6029Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042071-proteinTCONS_00042071-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003188supercontigsc0003188:5245..6029 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.84553	1.24811	0.423344	0.409373	1.1697	0.716959	1.74547	1.50923	1.17588	1.29349	2.35017	2.01276	2.32467	2.3973	4.47947	6.98398	3.48049	5.12362	1.01343	1.54045	1.51334	2.18532	1.67776	1.2732	2.0699	2.11342	0.547396	0.702617	0.775392	0.950428
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042071 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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