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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042063 ID=TCONS_00042063|Name=TCONS_00042063|organism=Clytia hemisphaerica|type=transcript|length=504bp
ATCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCA
TGTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGG
TGTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGT
GTATCACATGTGAAGGGTGGACAGATACTATGTATTGGACGATGGATGTT
ATGGATTATGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGT
CATTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCGGTG
AGTTTAGTAAAGAAAAAGAACGTGTTGAAAGTCGTAACGAATTTTTGCGA
CAACGCCGTGAAGATGAAGCACGTGAGAGGGCCATAGCGAACGGTGAAGA
ATGGATCGATGAAGGGGAGAGACTCAGACTGGAGGAAGAAGCCAGAAAAT
TGGCAGAATCTCAAAAAGAAGAACCCATAGAAGGAGTCGACCCACCGCCT
CAGT Run BLAST on NCBI protein sequence of TCONS_00042063-protein >TCONS_00042063-protein ID=TCONS_00042063-protein|Name=TCONS_00042063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
QIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTC
ITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGAQFMLNLVCGVLSGE
FSKEKERVESRNEFLRQRREDEARERAIANGEEWIDEGERLRLEEEARKL
AESQKEEPIEGVDPPPQ Run BLAST on NCBI transcript from alignment at sc0003179:473..3101+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042063 ID=TCONS_00042063|Name=TCONS_00042063|organism=Clytia hemisphaerica|type=transcript|length=2629bp|location=Sequence derived from alignment at sc0003179:473..3101+ (Clytia hemisphaerica)
ATCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCA
TGTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGG
TGTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGT
GTATCACATGTGAAGGGTGGACAGATACTATGTATTGGGTGAGATCGCTT
TCTTTATCATTCTTATAAGTATTGATGACTAAGAACTTGTCAAATAGAAC
AAAAATAAGTCCGAAAAAAGACATCTTGGCTCCTTGATACTCAGATATAG
ACACAATGCAATACATAGAAGCGCCAAAACAGGGTCTTAGAACACACTTA
CAAAGATAAGTTTATTTAAGGGATGTTAATTTCATGGTTTCGTCTGCCGC
CGCAACATAATGATGATGGTTTTTTTTGGGAAGGCGCTAATTTCCCCCTT
GCCGGTTGCCATTTTTTATAAACAGTCCAATCTCCTCTTAGAAACAATGT
TTACGCTTCTGCAACCCTGGGCTAAGAAAATTGCTAATATTAATGTGAAA
TTATTTCGTGCTTCAAAGCCGAGCTGTTTCCTGATCTTGTAAAAGTGGGG
GTTAGTTAATAGGTGTATTCTTTTTCTTCGCAGACGATGGATGTTATGGA
TTATGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGTCATTG
GTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCGGGTaagtt
tgttgattttttaataCGGTCATTTCCAACTGGACGCAATGCTTTTGGTT
TATTTCAGCTTAAGACCACGTTCACACACTACGTTCTGTTTCGCTCCAAA
ACACTGTCTGAACGTCAAAATTggaaacgtcaaaaagaagacgtgtacaa
agcaaaacagattgaAACGGTCTCGCTTGCACTATTTTAATAAGAACGGA
AATgttccgttttcttgctccaaaACTTCCGAAAATGAGTATGAACACTT
CTTATCCGTAACAAATACCACACTGGAgcgatacgaaaccgtaacgtcta
aACATAGTGTCTCTCTAAGATTCGTCTGTTCGTGATATGCATCACTGCAG
TATCTTCTACATCACACcatagacccaacagctgattggttgtaaatggc
gtaaaatcagtcaatacgtcacttacaaccaatcagctgatGGCTTCGTT
ATGTAATGTTAGAAGCTTAATGTTATAGTGCATATCATGgatacacgaat
attactaggcaagtgtTCAACGGCCCTGAAATTAAcacacaaaaaattaa
cacgaattttattttatttttcaaggacaccacggctggttttaattaag
ggtttttgattgatttaattaatcaattcgtgttaataaaatgactagta
atattcgtgtaatcaGGTAGTCAAGAATTTGATTATAACTTTAATGACTA
AGATTGCTATTTGCTTCATGTTTCATTACTCAGTAAAGCCCTTCACGAAA
CGTTCATTATGAGCTCTTCCTccaaacaaaatgaaagataaaCCCTAAAA
TTCATTCAAAGTTGTATACAGTTTTATGTCGTACCCACCGACATCATATA
CAAAACACTAGAAGGAGCTTCTTCGGCCCTTACTAAAGCAGAATTATACG
ATATCTTAAGTAAACAAATTACAATTTAGTGAACTTTTATAAAAGATATT
GCCTATTTTGGTTCACCTATCGTGGCATGGGAAAGATATGGAGACACTGT
TTTAAGTGTCACTTTAACCTCCTTGAGGGAAGTGTGATATGActtttatt
tcgtttttttctccAGTGAGTTTAGTAAAGAAAAAGAACGTGTTGAAAGT
CGTAACGAATTTTTGCGACAACGCCGTGAAGATGAAGCACGTGAGAGGGC
CATAGCGAACGGTGAAGAATGGATCGATGAAGGGGAGAGACTCAGACTGG
AGGAAGAAGCCAGAAAATGTGAGTTTTTTTGTGTGTCAATCCCCGTCTTT
GTAGTCATGATTGTATGCacaattgcaatgtcttctgacattacatcacg
gtccaaatagctgattggttgtaattgacgtaaaatcagtcaatgcatga
ctttcaaccaatcagctgttgggttcctggaagacattgcaatggtgcat
caTGAATTAGCTTTTTTCAACACCTAGCAACAATTACACCACCAAGGGGT
TAAGTTAAAATTGAACGTGGAGATTTAAGACTTTTTTTGTGTTGTGCCAA
TCCTCACCTAGCATTTATTTACACCACCAAGGAGTTAAACGCTTTGAAAG
CGATTTGATGGAACAACAAGAGGCATCTTGAATGAACCTAAACTTTATTG
GATCTTTGTGTAAATAAGGCATCAAATAGATGTGTGGTAGTTTTTCATTC
TCCTCTGGAACCTCGcgacaaaaatttcaattcagaGCGAGTTTTAACAT
CCCTCTCTATAAATATCTGCAACTGCCAATAAGGAACAGTTGGTTGCCAT
TGATGAAATTTTACCTACCTTGCTCTGTATCTGTATCTATAATACCCCGA
TAATTTACTATCTTGCATTTCATAGTGGCAGAATCTCAAAAAGAAGAACC
CATAGAAGGAGTCGACCCACCGCCTCAGT Coding sequence (CDS) from alignment at sc0003179:473..3101+ >TCONS_00042063 ID=TCONS_00042063|Name=TCONS_00042063|organism=Clytia hemisphaerica|type=CDS|length=2004bp|location=Sequence derived from alignment at sc0003179:473..3101+ (Clytia hemisphaerica)
CAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCATG
TCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGGTG
TGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGTGT
ATCACATGTGAAGGGTGGACAGATACTATGTATTGGACGATGGATGTTAT
GGATTATGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGTCA
TTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCGGTGAG
TTTAGTAAAGAAAAAGAACGTGTTGAAAGTCGTAACGAATTTTTGCGACA
ACGCCGTGAAGATGAAGCACGTGAGAGGGCCATAGCGAACGGTGAAGAAT
GGATCGATGAAGGGGAGAGACTCAGACTGGAGGAAGAAGCCAGAAAATTG
GCAGAATCTCAAAAAGAAGAACCCATAGAAGGAGTCGACCCACCGCCTCA
GCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCAT
GTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGGT
GTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGTG
TATCACATGTGAAGGGTGGACAGATACTATGTATTGGACGATGGATGTTA
TGGATTATGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGTC
ATTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCGGTGA
GTTTAGTAAAGAAAAAGAACGTGTTGAAAGTCGTAACGAATTTTTGCGAC
AACGCCGTGAAGATGAAGCACGTGAGAGGGCCATAGCGAACGGTGAAGAA
TGGATCGATGAAGGGGAGAGACTCAGACTGGAGGAAGAAGCCAGAAAATT
GGCAGAATCTCAAAAAGAAGAACCCATAGAAGGAGTCGACCCACCGCCTC
AGCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCCA
TGTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTGG
TGTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACGT
GTATCACATGTGAAGGGTGGACAGATACTATGTATTGGACGATGGATGTT
ATGGATTATGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATGT
CATTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCGGTG
AGTTTAGTAAAGAAAAAGAACGTGTTGAAAGTCGTAACGAATTTTTGCGA
CAACGCCGTGAAGATGAAGCACGTGAGAGGGCCATAGCGAACGGTGAAGA
ATGGATCGATGAAGGGGAGAGACTCAGACTGGAGGAAGAAGCCAGAAAAT
TGGCAGAATCTCAAAAAGAAGAACCCATAGAAGGAGTCGACCCACCGCCT
CAGCAAATAGAAGCTGGTCGACTATGTTCCGAGGGGAGCTCAGGACGTCC
ATGTCCCGAGGGAAGCATATGTAAAAGATACTGGGATGGTCCTAATTTTG
GTGTGACAAATTTCGATAATATTTTCAGTGCATGTCTGACTGTCTTTACG
TGTATCACATGTGAAGGGTGGACAGATACTATGTATTGGACGATGGATGT
TATGGATTATGATGGATATTATATGTTTTCGATTTATTGGCTTTTGAATG
TCATTGGTGCTCAATTCATGTTGAATTTAGTCTGTGGTGTCCTCAGCGGT
GAGTTTAGTAAAGAAAAAGAACGTGTTGAAAGTCGTAACGAATTTTTGCG
ACAACGCCGTGAAGATGAAGCACGTGAGAGGGCCATAGCGAACGGTGAAG
AATGGATCGATGAAGGGGAGAGACTCAGACTGGAGGAAGAAGCCAGAAAA
TTGGCAGAATCTCAAAAAGAAGAACCCATAGAAGGAGTCGACCCACCGCC
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042063-exon-sc0003179-1491911889:473..660 | TCONS_00042063-exon-sc0003179-1491911889:473..660 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1510915933:473..660 | TCONS_00042063-exon-sc0003179-1510915933:473..660 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1575043694:473..660 | TCONS_00042063-exon-sc0003179-1575043694:473..660 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1491911889:1106..1215 | TCONS_00042063-exon-sc0003179-1491911889:1106..1215 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1510915933:1106..1215 | TCONS_00042063-exon-sc0003179-1510915933:1106..1215 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1575043694:1106..1215 | TCONS_00042063-exon-sc0003179-1575043694:1106..1215 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1491911889:2289..2440 | TCONS_00042063-exon-sc0003179-1491911889:2289..2440 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1510915933:2289..2440 | TCONS_00042063-exon-sc0003179-1510915933:2289..2440 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1575043694:2289..2440 | TCONS_00042063-exon-sc0003179-1575043694:2289..2440 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1491911889:3048..3101 | TCONS_00042063-exon-sc0003179-1491911889:3048..3101 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1510915933:3048..3101 | TCONS_00042063-exon-sc0003179-1510915933:3048..3101 | Clytia hemisphaerica | exon |
| TCONS_00042063-exon-sc0003179-1575043694:3048..3101 | TCONS_00042063-exon-sc0003179-1575043694:3048..3101 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003179 | supercontig | sc0003179:473..3101 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005891 | voltage-gated calcium channel complex |
| GO:0016020 | membrane |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0070588 | calcium ion transmembrane transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005245 | voltage-gated calcium channel activity |
| GO:0005216 | ion channel activity |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0070588 |
calcium ion transmembrane transport |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0005891 |
voltage-gated calcium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005245 |
voltage-gated calcium channel activity |
Blast
BLAST of TCONS_00042063 vs. Swiss-Prot (Human)
Match: CAC1B (Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1) HSP 1 Score: 123.25 bits (308), Expect = 6.656e-32 Identity = 59/108 (54.63%), Postives = 73/108 (67.59%), Query Frame = 3
Query: 24 CSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGAQFMLNLVCGVLSGEFSKEKERVESRNEFL 347
C + + R C + C+ YW GPNFG+TNFDNI A LTVF CIT EGWTD +Y T D +++ I L +IG+ FMLNLV GVLSGEF+KE+ERVE+R FL
Sbjct: 268 CGKEAPARLCEGDTECREYWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGNTWNWLYFI--PLIIIGSFFMLNLVLGVLSGEFAKERERVENRRAFL 373
The following BLAST results are available for this feature:
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