TCONS_00042063-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00042063-protein
Unique NameTCONS_00042063-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length167

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00042063-protein ID=TCONS_00042063-protein|Name=TCONS_00042063-protein|organism=Clytia hemisphaerica|type=polypeptide|length=167bp
QIEAGRLCSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTC
ITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGAQFMLNLVCGVLSGE
FSKEKERVESRNEFLRQRREDEARERAIANGEEWIDEGERLRLEEEARKL
AESQKEEPIEGVDPPPQ
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025948XLOC_025948Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00042063TCONS_00042063Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002077VDCCAlpha1
IPR005821Ion_trans_dom
Vocabulary: Cellular Component
TermDefinition
GO:0005891voltage-gated calcium channel complex
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0070588calcium ion transmembrane transport
GO:0055085transmembrane transport
GO:0006811ion transport
Vocabulary: Molecular Function
TermDefinition
GO:0005245voltage-gated calcium channel activity
GO:0005216ion channel activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0070588 calcium ion transmembrane transport
biological_process GO:0006811 ion transport
biological_process GO:0055085 transmembrane transport
cellular_component GO:0016020 membrane
cellular_component GO:0005891 voltage-gated calcium channel complex
molecular_function GO:0005216 ion channel activity
molecular_function GO:0005245 voltage-gated calcium channel activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 105..125
NoneNo IPR availableGENE3D1.10.287.70coord: 19..104
e-value: 1.2E-10
score: 40.6
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 148..167
NoneNo IPR availableSUPERFAMILY81324Voltage-gated potassium channelscoord: 33..103
IPR002077Voltage-dependent calcium channel, alpha-1 subunitPRINTSPR00167CACHANNELcoord: 57..74
score: 30.03
coord: 98..122
score: 48.69
IPR005821Ion transport domainPFAMPF00520Ion_transcoord: 15..108
e-value: 2.2E-18
score: 66.3

Blast
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BLAST of TCONS_00042063-protein vs. Swiss-Prot (Human)
Match: CAC1B (Voltage-dependent N-type calcium channel subunit alpha-1B OS=Homo sapiens GN=CACNA1B PE=1 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 5.674e-39
Identity = 72/145 (49.66%), Postives = 92/145 (63.45%), Query Frame = 0 
Query:    8 CSEGSSGRPCPEGSICKRYWDGPNFGVTNFDNIFSACLTVFTCITCEGWTDTMYWTMDVMDYDGYYMFSIYWLLNVIGAQFMLNLVCGVLSGEFSKEKERVESRNEFLRQRREDEARERAIANGEEWIDEGERLRLEEEARKLAE 152
            C + +  R C   + C+ YW GPNFG+TNFDNI  A LTVF CIT EGWTD +Y T D       +++ I   L +IG+ FMLNLV GVLSGEF+KE+ERVE+R  FL+ RR+ +  ER +    EWI + E + L EE R   E
Sbjct:  268 CGKEAPARLCEGDTECREYWPGPNFGITNFDNILFAILTVFQCITMEGWTDILYNTNDAAGNTWNWLYFI--PLIIIGSFFMLNLVLGVLSGEFAKERERVENRRAFLKLRRQQQI-ERELNGYLEWIFKAEEVMLAEEDRNAEE 409
The following BLAST results are available for this feature:
BLAST of TCONS_00042063-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CAC1B5.674e-3949.66Voltage-dependent N-type calcium channel subunit a... [more]
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