TCONS_00042059 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042059
Unique NameTCONS_00042059
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length398

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042059 ID=TCONS_00042059|Name=TCONS_00042059|organism=Clytia hemisphaerica|type=transcript|length=398bp
tcccGACCAATTACACCTGTTAGTGACGACATAAACGATTACGAAGCCCT
GACTCCAAATCACTTTCTTCTTGGTCAATCCGCACCAAATTATCCAATCA
TAAGCGAGGCATCCGGACTAAGGAGCGAATGGAAGCAAGTCCAAAAGGCA
CTCGCAACGTTTTGGTCAAGATGGGTGAAAGAATACCTGCCCTCGCTTAA
CGAAAGGTCAAAATGGACGAGCGAAACGAGAAACATGAAGCCAGGAGACC
TTGTGGTCATCAAGGACACCTCAATTGCCAGACACAAGTGGCCGTTGGCA
CGAATCCAAAGCGTAATTCCATCAGAGGACGGCAGAACGCGAGTGGCAAT
CGTCAGGACGAAGGACGGGAGCACTTTTATACGAGCCGTTGGGAGGTT
Run BLAST on NCBI

protein sequence of TCONS_00042059-protein

>TCONS_00042059-protein ID=TCONS_00042059-protein|Name=TCONS_00042059-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
SRPITPVSDDINDYEALTPNHFLLGQSAPNYPIISEASGLRSEWKQVQKA
LATFWSRWVKEYLPSLNERSKWTSETRNMKPGDLVVIKDTSIARHKWPLA
RIQSVIPSEDGRTRVAIVRTKDGSTFIRAVGR
Run BLAST on NCBI

transcript from alignment at sc0003175:13258..13655

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042059 ID=TCONS_00042059|Name=TCONS_00042059|organism=Clytia hemisphaerica|type=transcript|length=398bp|location=Sequence derived from alignment at sc0003175:13258..13655 (Clytia hemisphaerica)
AACCTCCCAACGGCTCGTATAAAAGTGCTCCCGTCCTTCGTCCTGACGAT
TGCCACTCGCGTTCTGCCGTCCTCTGATGGAATTACGCTTTGGATTCGTG
CCAACGGCCACTTGTGTCTGGCAATTGAGGTGTCCTTGATGACCACAAGG
TCTCCTGGCTTCATGTTTCTCGTTTCGCTCGTCCATTTTGACCTTTCGTT
AAGCGAGGGCAGGTATTCTTTCACCCATCTTGACCAAAACGTTGCGAGTG
CCTTTTGGACTTGCTTCCATTCGCTCCTTAGTCCGGATGCCTCGCTTATG
ATTGGATAATTTGGTGCGGATTGACCAAGAAGAAAGTGATTTGGAGTCAG
GGCTTCGTAATCGTTTATGTCGTCACTAACAGGTGTAATTGGTCggga

Coding sequence (CDS) from alignment at sc0003175:13258..13655

>TCONS_00042059 ID=TCONS_00042059|Name=TCONS_00042059|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0003175:13258..13655 (Clytia hemisphaerica)
CCTCCCAACGGCTCGTATAAAAGTGCTCCCGTCCTTCGTCCTGACGATTG
CCACTCGCGTTCTGCCGTCCTCTGATGGAATTACGCTTTGGATTCGTGCC
AACGGCCACTTGTGTCTGGCAATTGAGGTGTCCTTGATGACCACAAGGTC
TCCTGGCTTCATGTTTCTCGTTTCGCTCGTCCATTTTGACCTTTCGTTAA
GCGAGGGCAGGTATTCTTTCACCCATCTTGACCAAAACGTTGCGAGTGCC
TTTTGGACTTGCTTCCATTCGCTCCTTAGTCCGGATGCCTCGCTTATGAT
TGGATAATTTGGTGCGGATTGACCAAGAAGAAAGTGATTTGGAGTCAGGG
CTTCGTAATCGTTTATGTCGTCACTAACAGGTGTAATTGGTCggga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025944XLOC_025944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042059-exon-sc0003175-1491911889:13258..13655TCONS_00042059-exon-sc0003175-1491911889:13258..13655Clytia hemisphaericaexon
TCONS_00042059-exon-sc0003175-1510915933:13258..13655TCONS_00042059-exon-sc0003175-1510915933:13258..13655Clytia hemisphaericaexon
TCONS_00042059-exon-sc0003175-1575043694:13258..13655TCONS_00042059-exon-sc0003175-1575043694:13258..13655Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042059-proteinTCONS_00042059-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003175supercontigsc0003175:13258..13655 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	1.3378	0.487686	0.739274	2.41597	0.781569	1.26297	0.54419	0.768122	0	0	0.152489	0	0	0	0	0	0	0	0	0	0	5.42856e-07	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042059 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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