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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00042054 ID=TCONS_00042054|Name=TCONS_00042054|organism=Clytia hemisphaerica|type=transcript|length=4348bp
GTGCATTCATAAAAATCGCCTAATTCTCTGGGCCCCAACCTCGCTGCAGA
CCCCAACGTGAACAGCATTATAAAAATTAAGACCGTGATGATAGAGTTAG
AAATTGAACAGTTAGAATGGTTCTCGTTCTCTGGTTCCTTAACGACGATC
ATGTTCAGGCTTTCTTTTCGAGTTCTTTTATTTTCTCCTTCTTTCTTTTC
CTTAGCTTTGGCCTTATTAGCTTTCTCTTGTTTTGTTCTGCGATTGAAGT
CTACAATGAGGTTTGGGTCTAAAATATTTTCACTAGGCTCCCAAGTAGCC
TGCGACAAGGGATATCCTTGCCACTTCACAAGATAATTCGTGATTCCAGA
TCGTTTCTGGATTTCAGAATTCTTTCCACCCTATAAACCAGGTCTTCCTG
TTCGATTTCCACTGTCGGATCCGGGACGTGCGGCATAGAATCTAAGGGGA
TGCAATCTAACGGGACGTCACAAAATTCGTCCTCTCCTTCGACCTCATTG
TCCGGTCTTTCCCTGGGGGTGTACTTCTNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNAGGGGATGCAATCTAACGGGACGTCACAAAATTCGTCCTC
TCCTTCGACCTCATTGTCCGGTCTTTCCCTGGGGGTGTACTTCTTTATTC
TGGAGGCATGTACATTTACTGGGACTCTCCTCCCCTCTATCTCGAGTTTA
AAATTGACAGGCGAAATTTGCTCAAGAATACGATATGGTCCATGCCAACG
GAATCTTAGTTTATTAGAAAGGCCCTTGATAGAGTCCGGCACGTGTAGCC
ATACCAAGTCTCCTACAAGAAAAGGCGCGTCCACTGGTGTTTTTCTTTCT
TCGTTCGCTTGCTGGGAACGTTGCATATTTTCTTTCGCGGTCTCTTGGGC
CAAACGAAGGGAGGTTATCAGCTGTTCTTTCTGTTCGGCTAACTCTCCCT
CTAATTCAGTTGGTGGTATAAGTGCTACGTCTAGGGGCATTCTGGGGTCG
CGGCCGTGGAGTAAGAAAAAGCGGAGTTTCTCTGGTAGTGGAATGGGGGG
TAACTCTATAAGCAAATAGAGCAGAGTTAATGTGGGTATCCCAGTCGTCC
TGAAATGCGTCAGTGAACTGGGCGAGTGTACGTGCTAAAGTTCCATTATA
CCGCTCTACCAGTCCGTTTGTCGCTGGGTGATATGCTGTGGTGTGAACCC
TCTTAATTCGCAAAGCAGTGCTGAGTTCGGCAACGAGCCTCGCCAGGAAA
TTCTTTCCACGATCCGAAAGAAGCTGCCTCGGGGCGCCAAACCTATAAAC
GATGCGTTCTAATATTATTTCCGCTATTAGAGGAGCTCTGGTGTGACTAG
TTGCGACGGCCTCTGGCCACTTTGTATACGTTTCAGTGAAAACTACTATA
TATCTATTTTCCTTGACTGTGCGCTTAAAGGGACCCAAAACATCGATGGC
CCACGCCGACAGTGGTTCCGAACAGGGAATGGTCATGAGTTGAAAGTTAC
TTCTCTTGGGATTCTTTTTTCTGTTGCAACCCTCACAGCTCAAGACCCAA
TTCTGANCGATGCGTTCTAATATTATTTCCGCTATTAGAGGAGCTCTGGT
GTGACTAGTCGCGACGGCCTCTGGCCACTTTGTATACGTTTCAGTGAAAA
CTACTATATATCTATTTTCCCTGACTGTGCGCTTGAAGGGACCCAAAACA
TCGATGGCCCACGCCGACAGTGATTCCGAACAGGGAATGGTCATGAGTTG
AAAGTTACTTCTCTTGGGATTCTTTTTTCTGTTGCAACCCTCACAGCTCA
AGACCCAATTCTGAATTTCTTTATAGAATCCTTGCCAATAATATTTCGAT
CGGATTCGATCAAACGTTTTATTGACCCTAAAATGTGAGGTATCATGGGA
CCAAATCAGAACTTCCTCTTTCAACTGAGAGGGGACTACAAGTTTTGATT
TGTCCACCCATTTTAAATAAGACCCCTTCCCCGCTGAGAAAGAATTGGTC
GGAAAGTAATATAACACTCTTCGCCGACTTGTCATCCTCGGGGATCGTCT
TACATTCTATNTTCCCCGCTGAGAAAGAATTGGTCGGAAAGTAATATAAC
ACTCTTCGCCGACTTTTCATCCTCGGGGATCGTCTTACATTCTATATATC
TAATGAGATCGGCCAGTTGTATGTCCTGTCTCTGCAACTGTGCGATCTCA
TTCTGAGATACCGTTGTAAGCATATTCAATGTGTGATACTCTCTTCTGCT
GAGAGCATCTGCGTTTGCGTTTAGTTTACCCGGACGGTAAACTAATGATA
ATTCGAACTCTTGAAGAGTCATGACCCACCTCGCAACCCTATTGCTCGGG
TTCGGTGATCTAACTAATGCTACGATTGGCTGGTGGTCGGTGACCACCGT
AAATTTTGATCCAAATACGAACGGACGATATTTCTTTAAAGCGAAGATAA
TGCCTAGAAACTCTTTTTCAGTTACGGTATATCTCGTTTCTGCACCTGTA
AGTGCTCTCCCTTGAAACGAGATAGGTCTTTCGACACCATCTATCTCCTG
AGACAGGGTTGCTCCCACTGCTATGTCAGAGGCATCTGTATGGATGATAA
AAGGAAGCGAAAAGTCAGGATGTGCTAGAACAGGGGTACTAGTCAACTTC
TcctttaagattttaaaacttGTTTAAGCTGCTTCATTCCATACAAAACG
CACATTCGCACCAGTAAGGGCATGTAACGGCCGGGTAATGTTGGAAAAGT
TTATTATAAACTTTTTATAATATGTGGCTAGACCAACAAAACTCCTTACC
TGCTTTGTTGAAGTAGGTGTTGGGAAATCGCGAATCGCTTTGACCTTATC
AGAATCAGTCTCAATACCTTTGCGTGAGACTACGTGGCCTAAATATGTAA
TGGAGGTCCGAAAAAATTCACACTTGGTTGGTTTAATTTGGAGCTTTTTA
TAAGCTAGGacatcaaaaacatgttcaaggTGGGTTAGATGCTCATGGGC
GGATTTCGATTTGACGACGATGTCGTCCAAGTAAATTTTCACAAACTCGG
GTAGGGGTTGGCCAAAAGCTTTCATAATTCTTCTTTGAAAACCTGCGGGA
GCGTGCACCAGACCAAAAGGGGTTGTTCTAAACTGAAACGACCCGATATG
GCAAATGAAAGCCGTGCACGCTCGTGAGTTTTTCTCTAAAGGGACCTGAT
GGTAACCCGACCTCATGTCAAGTATTGTAAAAAATAGGGAACCGTTAAAA
TCGGCTAAATTGTCTTCAATCAATGGCAGGGGGTAGGCTTCCGTTACTAT
CTgtttattcaattttctatagTCCACGCAAAAGCGAAAGGTGCCACCCT
TTTTTGGGGTGATAACTACTGGAGAACTGAAATCTGACCGGGAGGGTTCG
ATGACCCCGGTTCTCAAAAGGTTGTCAATGTGATCCTCGATCACTCGTTT
CACTTTTGGTGAAGCCTTATACGCTCGCAACTGGATAGGAGTTTTGTCCT
TAAGTTTTATCTCAAACGGCTCTACATTGGCTGGTGTTAGGCTATCCGGG
TCATGACAAAAAACTGACGAgtatttaaataaaaatcttcggaaattatt
tttcatgtCCTCTGGGACATTAACATTCTTCACTTGATCTTCAACGTAAT
CTTCATGATTcacagttttttgttttttcggtGTCATGGCCGGATTTGAC
TCAAAAGTTATTTTACTAATCTTAAGTTCCTGTTCGTCATCGTTTTTCGC
ATGTTTCGAGATCTCCAAACTGTTCAAATCGTAATTTATTATAGCGCCAT
ATCGGCGTAAAAAATCATTCCCCAAAATTATGGGACAAGAGAGTCCTTTG
ACGATCAGAAATTCCATCTTTGTGGAATGATCTCCTGGCCCTAATCCTAA
TTCAAAAATCGCTTTGAGATTTGTGGTGACACTTTTGTCAGTCGCGAGAC
TCAAGTGTGTGGGGACGTCCgtaacaaatttgttttccttGGGTAATGTC
TTACCAAAGTCCTCACTAATACAGGAGGCTGTGGCTCCCGTGTCCACCAA
AGCTGAGACAGAGGCTCCCCCGAAATTGACGTTTAGGTTCAGAacagaaa
gtttttcatttgcaaTGAATGGAATACTTATTCTAAGTTGGTTTTTGTTG
GAGGACTGAATTCCTTGATCAGCCTCCAGCGGAGTTGTCTCGTCATTGGT
CGTCAATGTTCGGAGTGAACCCCTTTCTCTCCTAGGTTCTGGACATTCCC
TTGAAAAGTGGCCCAATTTATGGCAATTGTAGCACTCCACACTTCTCCCA
TTCGACTCTCCTCGCCTCTCATTCATTCTCCCACCGTTAGTTGGCCNN Run BLAST on NCBI protein sequence of TCONS_00042054-protein >TCONS_00042054-protein ID=TCONS_00042054-protein|Name=TCONS_00042054-protein|organism=Clytia hemisphaerica|type=polypeptide|length=557bp
XPTNGGRMNERRGESNGRSVECYNCHKLGHFSRECPEPRRERGSLRTLTT
NDETTPLEADQGIQSSNKNQLRISIPFIANEKLSVLNLNVNFGGASVSAL
VDTGATASCISEDFGKTLPKENKFVTDVPTHLSLATDKSVTTNLKAIFEL
GLGPGDHSTKMEFLIVKGLSCPIILGNDFLRRYGAIINYDLNSLEISKHA
KNDDEQELKISKITFESNPAMTPKKQKTVNHEDYVEDQVKNVNVPEDMKN
NFRRFLFKYSSVFCHDPDSLTPANVEPFEIKLKDKTPIQLRAYKASPKVK
RVIEDHIDNLLRTGVIEPSRSDFSSPVVITPKKGGTFRFCVDYRKLNKQI
VTEAYPLPLIEDNLADFNGSLFFTILDMRSGYHQVPLEKNSRACTAFICH
IGSFQFRTTPFGLVHAPAGFQRRIMKAFGQPLPEFVKIYLDDIVVKSKSA
HEHLTHLEHVFDVLAYKKLQIKPTKCEFFRTSITYLGHVVSRKGIETDSD
KVKAIRDFPTPTSTKQVRSFVGLATYYKKFIINFSNITRPLHALTGANVR
FVWNEAA Run BLAST on NCBI transcript from alignment at sc0003170:5028..9375 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00042054 ID=TCONS_00042054|Name=TCONS_00042054|organism=Clytia hemisphaerica|type=transcript|length=4348bp|location=Sequence derived from alignment at sc0003170:5028..9375 (Clytia hemisphaerica)
NNGGCCAACTAACGGTGGGAGAATGAATGAGAGGCGAGGAGAGTCGAATG
GGAGAAGTGTGGAGTGCTACAATTGCCATAAATTGGGCCACTTTTCAAGG
GAATGTCCAGAACCTAGGAGAGAAAGGGGTTCACTCCGAACATTGACGAC
CAATGACGAGACAACTCCGCTGGAGGCTGATCAAGGAATTCAGTCCTCCA
ACAAAAACCAACTTAGAATAAGTATTCCATTCAttgcaaatgaaaaactt
tctgtTCTGAACCTAAACGTCAATTTCGGGGGAGCCTCTGTCTCAGCTTT
GGTGGACACGGGAGCCACAGCCTCCTGTATTAGTGAGGACTTTGGTAAGA
CATTACCCaaggaaaacaaatttgttacGGACGTCCCCACACACTTGAGT
CTCGCGACTGACAAAAGTGTCACCACAAATCTCAAAGCGATTTTTGAATT
AGGATTAGGGCCAGGAGATCATTCCACAAAGATGGAATTTCTGATCGTCA
AAGGACTCTCTTGTCCCATAATTTTGGGGAATGATTTTTTACGCCGATAT
GGCGCTATAATAAATTACGATTTGAACAGTTTGGAGATCTCGAAACATGC
GAAAAACGATGACGAACAGGAACTTAAGATTAGTAAAATAACTTTTGAGT
CAAATCCGGCCATGACaccgaaaaaacaaaaaactgtgAATCATGAAGAT
TACGTTGAAGATCAAGTGAAGAATGTTAATGTCCCAGAGGacatgaaaaa
taatttccgaagatttttatttaaatacTCGTCAGTTTTTTGTCATGACC
CGGATAGCCTAACACCAGCCAATGTAGAGCCGTTTGAGATAAAACTTAAG
GACAAAACTCCTATCCAGTTGCGAGCGTATAAGGCTTCACCAAAAGTGAA
ACGAGTGATCGAGGATCACATTGACAACCTTTTGAGAACCGGGGTCATCG
AACCCTCCCGGTCAGATTTCAGTTCTCCAGTAGTTATCACCCCAAAAAAG
GGTGGCACCTTTCGCTTTTGCGTGGActatagaaaattgaataaacAGAT
AGTAACGGAAGCCTACCCCCTGCCATTGATTGAAGACAATTTAGCCGATT
TTAACGGTTCCCTATTTTTTACAATACTTGACATGAGGTCGGGTTACCAT
CAGGTCCCTTTAGAGAAAAACTCACGAGCGTGCACGGCTTTCATTTGCCA
TATCGGGTCGTTTCAGTTTAGAACAACCCCTTTTGGTCTGGTGCACGCTC
CCGCAGGTTTTCAAAGAAGAATTATGAAAGCTTTTGGCCAACCCCTACCC
GAGTTTGTGAAAATTTACTTGGACGACATCGTCGTCAAATCGAAATCCGC
CCATGAGCATCTAACCCAccttgaacatgtttttgatgtCCTAGCTTATA
AAAAGCTCCAAATTAAACCAACCAAGTGTGAATTTTTTCGGACCTCCATT
ACATATTTAGGCCACGTAGTCTCACGCAAAGGTATTGAGACTGATTCTGA
TAAGGTCAAAGCGATTCGCGATTTCCCAACACCTACTTCAACAAAGCAGG
TAAGGAGTTTTGTTGGTCTAGCCACATATTATAAAAAGTTTATAATAAAC
TTTTCCAACATTACCCGGCCGTTACATGCCCTTACTGGTGCGAATGTGCG
TTTTGTATGGAATGAAGCAGCTTAAACaagttttaaaatcttaaaggAGA
AGTTGACTAGTACCCCTGTTCTAGCACATCCTGACTTTTCGCTTCCTTTT
ATCATCCATACAGATGCCTCTGACATAGCAGTGGGAGCAACCCTGTCTCA
GGAGATAGATGGTGTCGAAAGACCTATCTCGTTTCAAGGGAGAGCACTTA
CAGGTGCAGAAACGAGATATACCGTAACTGAAAAAGAGTTTCTAGGCATT
ATCTTCGCTTTAAAGAAATATCGTCCGTTCGTATTTGGATCAAAATTTAC
GGTGGTCACCGACCACCAGCCAATCGTAGCATTAGTTAGATCACCGAACC
CGAGCAATAGGGTTGCGAGGTGGGTCATGACTCTTCAAGAGTTCGAATTA
TCATTAGTTTACCGTCCGGGTAAACTAAACGCAAACGCAGATGCTCTCAG
CAGAAGAGAGTATCACACATTGAATATGCTTACAACGGTATCTCAGAATG
AGATCGCACAGTTGCAGAGACAGGACATACAACTGGCCGATCTCATTAGA
TATATAGAATGTAAGACGATCCCCGAGGATGAAAAGTCGGCGAAGAGTGT
TATATTACTTTCCGACCAATTCTTTCTCAGCGGGGAANATAGAATGTAAG
ACGATCCCCGAGGATGACAAGTCGGCGAAGAGTGTTATATTACTTTCCGA
CCAATTCTTTCTCAGCGGGGAAGGGGTCTTATTTAAAATGGGTGGACAAA
TCAAAACTTGTAGTCCCCTCTCAGTTGAAAGAGGAAGTTCTGATTTGGTC
CCATGATACCTCACATTTTAGGGTCAATAAAACGTTTGATCGAATCCGAT
CGAAATATTATTGGCAAGGATTCTATAAAGAAATTCAGAATTGGGTCTTG
AGCTGTGAGGGTTGCAACAGAAAAAAGAATCCCAAGAGAAGTAACTTTCA
ACTCATGACCATTCCCTGTTCGGAATCACTGTCGGCGTGGGCCATCGATG
TTTTGGGTCCCTTCAAGCGCACAGTCAGGGAAAATAGATATATAGTAGTT
TTCACTGAAACGTATACAAAGTGGCCAGAGGCCGTCGCGACTAGTCACAC
CAGAGCTCCTCTAATAGCGGAAATAATATTAGAACGCATCGNTCAGAATT
GGGTCTTGAGCTGTGAGGGTTGCAACAGAAAAAAGAATCCCAAGAGAAGT
AACTTTCAACTCATGACCATTCCCTGTTCGGAACCACTGTCGGCGTGGGC
CATCGATGTTTTGGGTCCCTTTAAGCGCACAGTCAAGGAAAATAGATATA
TAGTAGTTTTCACTGAAACGTATACAAAGTGGCCAGAGGCCGTCGCAACT
AGTCACACCAGAGCTCCTCTAATAGCGGAAATAATATTAGAACGCATCGT
TTATAGGTTTGGCGCCCCGAGGCAGCTTCTTTCGGATCGTGGAAAGAATT
TCCTGGCGAGGCTCGTTGCCGAACTCAGCACTGCTTTGCGAATTAAGAGG
GTTCACACCACAGCATATCACCCAGCGACAAACGGACTGGTAGAGCGGTA
TAATGGAACTTTAGCACGTACACTCGCCCAGTTCACTGACGCATTTCAGG
ACGACTGGGATACCCACATTAACTCTGCTCTATTTGCTTATAGAGTTACC
CCCCATTCCACTACCAGAGAAACTCCGCTTTTTCTTACTCCACGGCCGCG
ACCCCAGAATGCCCCTAGACGTAGCACTTATACCACCAACTGAATTAGAG
GGAGAGTTAGCCGAACAGAAAGAACAGCTGATAACCTCCCTTCGTTTGGC
CCAAGAGACCGCGAAAGAAAATATGCAACGTTCCCAGCAAGCGAACGAAG
AAAGAAAAACACCAGTGGACGCGCCTTTTCTTGTAGGAGACTTGGTATGG
CTACACGTGCCGGACTCTATCAAGGGCCTTTCTAATAAACTAAGATTCCG
TTGGCATGGACCATATCGTATTCTTGAGCAAATTTCGCCTGTCAATTTTA
AACTCGAGATAGAGGGGAGGAGAGTCCCAGTAAATGTACATGCCTCCAGA
ATAAAGAAGTACACCCCCAGGGAAAGACCGGACAATGAGGTCGAAGGAGA
GGACGAATTTTGTGACGTCCCGTTAGATTGCATCCCCTNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNAGAAGTACACCCCCAGGGAAAGACCGGACA
ATGAGGTCGAAGGAGAGGACGAATTTTGTGACGTCCCGTTAGATTGCATC
CCCTTAGATTCTATGCCGCACGTCCCGGATCCGACAGTGGAAATCGAACA
GGAAGACCTGGTTTATAGGGTGGAAAGAATTCTGAAATCCAGAAACGATC
TGGAATCACGAATTATCTTGTGAAGTGGCAAGGATATCCCTTGTCGCAGG
CTACTTGGGAGCCTAGTGAAAATATTTTAGACCCAAACCTCATTGTAGAC
TTCAATCGCAGAACAAAACAAGAGAAAGCTAATAAGGCCAAAGCTAAGGA
AAAGAAAGAAGGAGAAAATAAAAGAACTCGAAAAGAAAGCCTGAACATGA
TCGTCGTTAAGGAACCAGAGAACGAGAACCATTCTAACTGTTCAATTTCT
AACTCTATCATCACGGTCTTAATTTTTATAATGCTGTTCACGTTGGGGTC
TGCAGCGAGGTTGGGGCCCAGAGAATTAGGCGATTTTTATGAATGCAC Coding sequence (CDS) from alignment at sc0003170:5028..9375 >TCONS_00042054 ID=TCONS_00042054|Name=TCONS_00042054|organism=Clytia hemisphaerica|type=CDS|length=1674bp|location=Sequence derived from alignment at sc0003170:5028..9375 (Clytia hemisphaerica)
NGGCCAACTAACGGTGGGAGAATGAATGAGAGGCGAGGAGAGTCGAATGG
GAGAAGTGTGGAGTGCTACAATTGCCATAAATTGGGCCACTTTTCAAGGG
AATGTCCAGAACCTAGGAGAGAAAGGGGTTCACTCCGAACATTGACGACC
AATGACGAGACAACTCCGCTGGAGGCTGATCAAGGAATTCAGTCCTCCAA
CAAAAACCAACTTAGAATAAGTATTCCATTCAttgcaaatgaaaaacttt
ctgtTCTGAACCTAAACGTCAATTTCGGGGGAGCCTCTGTCTCAGCTTTG
GTGGACACGGGAGCCACAGCCTCCTGTATTAGTGAGGACTTTGGTAAGAC
ATTACCCaaggaaaacaaatttgttacGGACGTCCCCACACACTTGAGTC
TCGCGACTGACAAAAGTGTCACCACAAATCTCAAAGCGATTTTTGAATTA
GGATTAGGGCCAGGAGATCATTCCACAAAGATGGAATTTCTGATCGTCAA
AGGACTCTCTTGTCCCATAATTTTGGGGAATGATTTTTTACGCCGATATG
GCGCTATAATAAATTACGATTTGAACAGTTTGGAGATCTCGAAACATGCG
AAAAACGATGACGAACAGGAACTTAAGATTAGTAAAATAACTTTTGAGTC
AAATCCGGCCATGACaccgaaaaaacaaaaaactgtgAATCATGAAGATT
ACGTTGAAGATCAAGTGAAGAATGTTAATGTCCCAGAGGacatgaaaaat
aatttccgaagatttttatttaaatacTCGTCAGTTTTTTGTCATGACCC
GGATAGCCTAACACCAGCCAATGTAGAGCCGTTTGAGATAAAACTTAAGG
ACAAAACTCCTATCCAGTTGCGAGCGTATAAGGCTTCACCAAAAGTGAAA
CGAGTGATCGAGGATCACATTGACAACCTTTTGAGAACCGGGGTCATCGA
ACCCTCCCGGTCAGATTTCAGTTCTCCAGTAGTTATCACCCCAAAAAAGG
GTGGCACCTTTCGCTTTTGCGTGGActatagaaaattgaataaacAGATA
GTAACGGAAGCCTACCCCCTGCCATTGATTGAAGACAATTTAGCCGATTT
TAACGGTTCCCTATTTTTTACAATACTTGACATGAGGTCGGGTTACCATC
AGGTCCCTTTAGAGAAAAACTCACGAGCGTGCACGGCTTTCATTTGCCAT
ATCGGGTCGTTTCAGTTTAGAACAACCCCTTTTGGTCTGGTGCACGCTCC
CGCAGGTTTTCAAAGAAGAATTATGAAAGCTTTTGGCCAACCCCTACCCG
AGTTTGTGAAAATTTACTTGGACGACATCGTCGTCAAATCGAAATCCGCC
CATGAGCATCTAACCCAccttgaacatgtttttgatgtCCTAGCTTATAA
AAAGCTCCAAATTAAACCAACCAAGTGTGAATTTTTTCGGACCTCCATTA
CATATTTAGGCCACGTAGTCTCACGCAAAGGTATTGAGACTGATTCTGAT
AAGGTCAAAGCGATTCGCGATTTCCCAACACCTACTTCAACAAAGCAGGT
AAGGAGTTTTGTTGGTCTAGCCACATATTATAAAAAGTTTATAATAAACT
TTTCCAACATTACCCGGCCGTTACATGCCCTTACTGGTGCGAATGTGCGT
TTTGTATGGAATGAAGCAGCTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00042054-exon-sc0003170-1491911889:5028..9375 | TCONS_00042054-exon-sc0003170-1491911889:5028..9375 | Clytia hemisphaerica | exon |
| TCONS_00042054-exon-sc0003170-1510915933:5028..9375 | TCONS_00042054-exon-sc0003170-1510915933:5028..9375 | Clytia hemisphaerica | exon |
| TCONS_00042054-exon-sc0003170-1575043694:5028..9375 | TCONS_00042054-exon-sc0003170-1575043694:5028..9375 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003170 | supercontig | sc0003170:5028..9375 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0008270 | zinc ion binding |
| GO:0003676 | nucleic acid binding |
| GO:0004190 | aspartic-type endopeptidase activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006508 | proteolysis |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006508 |
proteolysis |
| molecular_function |
GO:0004190 |
aspartic-type endopeptidase activity |
| molecular_function |
GO:0003676 |
nucleic acid binding |
| molecular_function |
GO:0008270 |
zinc ion binding |
Blast
BLAST of TCONS_00042054 vs. Swiss-Prot (Human)
Match: RTL1 (Retrotransposon-like protein 1 OS=Homo sapiens GN=RTL1 PE=3 SV=3) HSP 1 Score: 95.9005 bits (237), Expect = 1.193e-19 Identity = 84/337 (24.93%), Postives = 147/337 (43.62%), Query Frame = -2
Query: 2356 RFCVDYRKLNKQIVTEAYPLPLIEDNLADFNGSLFFTILDMR--------SGYHQVPLEKNSRACTAFICHIGSFQFRTTPFGLVHAPAGFQRRIMKAFGQPLPEFVKIYLDDIVVKSKSAHEHLTHLEHVFDVLAYKKLQIKPTKCEFFRTSITYLGHVVSRKGIETDSDKVKAIRDFPTPTSTKQVRSFVGLATYYKKFIINFSNITRPLHALTGANVRFVWNEAA*TSFKILKEKLTSTPVLAHPDFSLPFIIHTDASDIAVGATLSQEID--GVERPISFQGRALTGAETRYTVTEKEFLGIIFALKKYRPFVFGSKFTVVTDHQPIVALVRS 3336
R +Y L + + +I + +G+ +FT L++R +G+ + K + + + S+Q PF L P Q I L FV Y ++++ S S EHL H+ V + + K +F R ++ +LG VV+ KG++ + + + I +PTP S +R+F+ Y+ F+ FS I PL ++ +F W +F+ LK P+L HP PF + T + A+ A+L Q D G +F R ++ E Y+ E + L I A F+ ++ T+ +PI+ L+ +
Sbjct: 628 RLQEEYWDLQDMLTNRQDYIQMIPELFDQLHGAEWFTKLELRGTIVEESVNGHRTEDVWKAAFGLE--LEEMKSYQ----PFALSPDPIIPQNVIHFILKDMLGFFVLSYGQEVLIYSMSQEEHLHHVRQVLVRFRHHNVYCSLDKSQFHRQTVEFLGFVVTPKGVKLNKNVMTIITGYPTPGSKLSLRNFIEFVFPYRHFVERFSIIAEPLVRQLLSSYQFYWGVEEQEAFECLKRAFRKAPLLHHPKPQNPFYLETGVTGTALHASLIQIDDQTGKRACCAFYSRNISPIEVEYSQAEMKILPIRAA------FMVWCRYLENTE-EPIMILLNT 951
The following BLAST results are available for this feature:
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