TCONS_00042048 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042048
Unique NameTCONS_00042048
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length468

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042048 ID=TCONS_00042048|Name=TCONS_00042048|organism=Clytia hemisphaerica|type=transcript|length=468bp
GAGAATATAAGACTTTCAAATATAAACATTGGATTGATTTGAGCCAGATT
GATGAAGTTTCGATTgagaatattgaaaaggagcAGAATATTCAGAAGAT
TGAATTCGACATCCAATTTGATGATGAGGAAACAGAAAAATCATATCAAC
AACATGTTCAAAATCTTTTGGACGAGTTACCTGAAATGTGTCGGAATTGt
gagatcaaaacaaaaagcatAATCAAACTGGATGGAATCAACATTGGAAT
CAACATTGACAGAGAGATTGTTATCAAGCTAAGTTCCACCGGTCTTGAAA
AGTTTCTAGAAGAGTATCCTTGGttagttgttttgtttttgcctgtCGGC
ATCCTAAGCATATGTCGGAAGATCATCGATTGGTTAATCGTTAGAATGGA
TATTGAGCCCTTTTTAAAGAAAGTAACAATCAGAAAAGTCGTTTCAAACA
AAGATATTGAGGTCATAT
Run BLAST on NCBI

protein sequence of TCONS_00042048-protein

>TCONS_00042048-protein ID=TCONS_00042048-protein|Name=TCONS_00042048-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
EYKTFKYKHWIDLSQIDEVSIENIEKEQNIQKIEFDIQFDDEETEKSYQQ
HVQNLLDELPEMCRNCEIKTKSIIKLDGINIGINIDREIVIKLSSTGLEK
FLEEYPWLVVLFLPVGILSICRKIIDWLIVRMDIEPFLKKVTIRKVVSNK
DIEVI
Run BLAST on NCBI

transcript from alignment at sc0003168:10..477

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042048 ID=TCONS_00042048|Name=TCONS_00042048|organism=Clytia hemisphaerica|type=transcript|length=468bp|location=Sequence derived from alignment at sc0003168:10..477 (Clytia hemisphaerica)
ATATGACCTCAATATCTTTGTTTGAAACGACTTTTCTGATTGTTACTTTC
TTTAAAAAGGGCTCAATATCCATTCTAACGATTAACCAATCGATGATCTT
CCGACATATGCTTAGGATGCCGacaggcaaaaacaaaacaactaaCCAAG
GATACTCTTCTAGAAACTTTTCAAGACCGGTGGAACTTAGCTTGATAACA
ATCTCTCTGTCAATGTTGATTCCAATGTTGATTCCATCCAGTTTGATTat
gctttttgttttgatctcaCAATTCCGACACATTTCAGGTAACTCGTCCA
AAAGATTTTGAACATGTTGTTGATATGATTTTTCTGTTTCCTCATCATCA
AATTGGATGTCGAATTCAATCTTCTGAATATTCTgctccttttcaatatt
ctcAATCGAAACTTCATCAATCTGGCTCAAATCAATCCAATGTTTATATT
TGAAAGTCTTATATTCTC

Coding sequence (CDS) from alignment at sc0003168:10..477

>TCONS_00042048 ID=TCONS_00042048|Name=TCONS_00042048|organism=Clytia hemisphaerica|type=CDS|length=465bp|location=Sequence derived from alignment at sc0003168:10..477 (Clytia hemisphaerica)
TATGACCTCAATATCTTTGTTTGAAACGACTTTTCTGATTGTTACTTTCT
TTAAAAAGGGCTCAATATCCATTCTAACGATTAACCAATCGATGATCTTC
CGACATATGCTTAGGATGCCGacaggcaaaaacaaaacaactaaCCAAGG
ATACTCTTCTAGAAACTTTTCAAGACCGGTGGAACTTAGCTTGATAACAA
TCTCTCTGTCAATGTTGATTCCAATGTTGATTCCATCCAGTTTGATTatg
ctttttgttttgatctcaCAATTCCGACACATTTCAGGTAACTCGTCCAA
AAGATTTTGAACATGTTGTTGATATGATTTTTCTGTTTCCTCATCATCAA
ATTGGATGTCGAATTCAATCTTCTGAATATTCTgctccttttcaatattc
tcAATCGAAACTTCATCAATCTGGCTCAAATCAATCCAATGTTTATATTT
GAAAGTCTTATATTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025933XLOC_025933Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042048-proteinTCONS_00042048-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042048-exon-sc0003168-1491911889:10..477TCONS_00042048-exon-sc0003168-1491911889:10..477Clytia hemisphaericaexon
TCONS_00042048-exon-sc0003168-1510915933:10..477TCONS_00042048-exon-sc0003168-1510915933:10..477Clytia hemisphaericaexon
TCONS_00042048-exon-sc0003168-1575043694:10..477TCONS_00042048-exon-sc0003168-1575043694:10..477Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003168supercontigsc0003168:10..477 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.71477	1.54013	0.480247	0.28754	0	0.145972	0.198438	0.222341	0	0.571916	0	0.182455	4.11882	4.82772	3.75082	3.89582	0.189403	0.534831	0.19587	1.80998	0.328039	0	0.672071	1.33912	0	0	0.754144	1.06111	0	0.177367
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042048 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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