TCONS_00042042 (transcript) - C. hemisphaerica

Overview
NameTCONS_00042042
Unique NameTCONS_00042042
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length395

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00042042 ID=TCONS_00042042|Name=TCONS_00042042|organism=Clytia hemisphaerica|type=transcript|length=395bp
NGTGAACTAAGTTGTTTAAGTCATTTTGGAGCACATGACTGTCTGCTAGC
TGTTTTATAATTCTGTACAGTAGAGAATCATCTGCAAAGAGTGGAAGTGA
CGACTCTACTGTTAGAGGCATGTCATTGATGTAAACGAGAAACAACAGGG
GCCCTAAAACAGTTCCTTGGGGAACCCTTGATGTAACTGGGGAGCTTTCA
GAAATTGTGCCTCTTACAACAACGTTCTGTGATCTTCCTGACAGAAAATC
TTTAATCCAAGCAAGGATTCCATTGACTCCGTAATGTTGAAGTTTTAGTA
GTAGTTTACGATAACATACTTTGTCAAATGCTTTGCTGAAGTCGAGAAGT
ATTGCATCTACCTGTTCACCATTGTTTAAGGCCTTAGCAAAGTCG
Run BLAST on NCBI

protein sequence of TCONS_00042042-protein

>TCONS_00042042-protein ID=TCONS_00042042-protein|Name=TCONS_00042042-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
DFAKALNNGEQVDAILLDFSKAFDKVCYRKLLLKLQHYGVNGILAWIKDF
LSGRSQNVVVRGTISESSPVTSRVPQGTVLGPLLFLVYINDMPLTVESSL
PLFADDSLLYRIIKQLADSHVLQNDLNNLVH
Run BLAST on NCBI

transcript from alignment at sc0003164:2736..3130

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00042042 ID=TCONS_00042042|Name=TCONS_00042042|organism=Clytia hemisphaerica|type=transcript|length=395bp|location=Sequence derived from alignment at sc0003164:2736..3130 (Clytia hemisphaerica)
CGACTTTGCTAAGGCCTTAAACAATGGTGAACAGGTAGATGCAATACTTC
TCGACTTCAGCAAAGCATTTGACAAAGTATGTTATCGTAAACTACTACTA
AAACTTCAACATTACGGAGTCAATGGAATCCTTGCTTGGATTAAAGATTT
TCTGTCAGGAAGATCACAGAACGTTGTTGTAAGAGGCACAATTTCTGAAA
GCTCCCCAGTTACATCAAGGGTTCCCCAAGGAACTGTTTTAGGGCCCCTG
TTGTTTCTCGTTTACATCAATGACATGCCTCTAACAGTAGAGTCGTCACT
TCCACTCTTTGCAGATGATTCTCTACTGTACAGAATTATAAAACAGCTAG
CAGACAGTCATGTGCTCCAAAATGACTTAAACAACTTAGTTCACN

Coding sequence (CDS) from alignment at sc0003164:2736..3130

>TCONS_00042042 ID=TCONS_00042042|Name=TCONS_00042042|organism=Clytia hemisphaerica|type=CDS|length=393bp|location=Sequence derived from alignment at sc0003164:2736..3130 (Clytia hemisphaerica)
GACTTTGCTAAGGCCTTAAACAATGGTGAACAGGTAGATGCAATACTTCT
CGACTTCAGCAAAGCATTTGACAAAGTATGTTATCGTAAACTACTACTAA
AACTTCAACATTACGGAGTCAATGGAATCCTTGCTTGGATTAAAGATTTT
CTGTCAGGAAGATCACAGAACGTTGTTGTAAGAGGCACAATTTCTGAAAG
CTCCCCAGTTACATCAAGGGTTCCCCAAGGAACTGTTTTAGGGCCCCTGT
TGTTTCTCGTTTACATCAATGACATGCCTCTAACAGTAGAGTCGTCACTT
CCACTCTTTGCAGATGATTCTCTACTGTACAGAATTATAAAACAGCTAGC
AGACAGTCATGTGCTCCAAAATGACTTAAACAACTTAGTTCAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025928XLOC_025928Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042042-proteinTCONS_00042042-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00042042-exon-sc0003164-1491911889:2736..3130TCONS_00042042-exon-sc0003164-1491911889:2736..3130Clytia hemisphaericaexon
TCONS_00042042-exon-sc0003164-1510915933:2736..3130TCONS_00042042-exon-sc0003164-1510915933:2736..3130Clytia hemisphaericaexon
TCONS_00042042-exon-sc0003164-1575043694:2736..3130TCONS_00042042-exon-sc0003164-1575043694:2736..3130Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003164supercontigsc0003164:2736..3130 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.280248	0	0.322325	0	2.54591	4.36075	2.61865	2.98452	1.26558	1.41625	2.13158	1.07281	4.41981	2.3099	1.80318	0.820489	2.3945	1.86753	2.263	2.90353	1.06659	1.87406	0	1.08242	3.75209	2.67653	13.079	21.11	15.2737	15.2769
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00042042 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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