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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041988 ID=TCONS_00041988|Name=TCONS_00041988|organism=Clytia hemisphaerica|type=transcript|length=3190bpRun BLAST on NCBI protein sequence of Putative FGF receptor >TCONS_00041988-protein ID=TCONS_00041988-protein|Name=Putative FGF receptor|organism=Clytia hemisphaerica|type=polypeptide|length=680bp FTSFVYIFSDNKNDKTAPRVISQVTSLPEIVLNDVEVDCSIEGALPVNVSRun BLAST on NCBI transcript from alignment at sc0003135:6632..12507- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00041988 ID=TCONS_00041988|Name=TCONS_00041988|organism=Clytia hemisphaerica|type=transcript|length=5876bp|location=Sequence derived from alignment at sc0003135:6632..12507- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0003135:6632..12507- >TCONS_00041988 ID=TCONS_00041988|Name=TCONS_00041988|organism=Clytia hemisphaerica|type=CDS|length=22473bp|location=Sequence derived from alignment at sc0003135:6632..12507- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00041988 vs. Swiss-Prot (Human)
Match: FGFR2 (Fibroblast growth factor receptor 2 OS=Homo sapiens GN=FGFR2 PE=1 SV=1) HSP 1 Score: 415.616 bits (1067), Expect = 6.947e-129 Identity = 248/655 (37.86%), Postives = 357/655 (54.50%), Query Frame = 1
Query: 25 SDNKNDKTAP------RVISQVTSLPEIVLNDVEVDCSIEGALPVNVSWEKDGIPLSRVHRPGGFQYDNQRTILKLNKILPEDRGNYTCFIQNKYGSTSHSAEIEPLEKALTAPHFIGHNDAVIYGSIGESLNVTAQAVVFNTAHFQLILXXXXXXXXXXXXEQRLTVLSTPREIHLLGPETARESNDAYRYKLIFMFKNLNASDFAIYSIMAGNTFGYDVYQFSIERRPAVKSPPVAEASTGKQTIIIVIISLAVGCIIILVVAALLWRHKSKRGFNNNNKFFSGTNIETVQLNLEPTGRRIKYS----------------SNRLSSCHTEKEYISDLVHY----DEKWEVDYDNIELRGLLGEGAFGRVMLSVVHGLPSN-PNEPTVAAVKMLKDDATENELKDLLSEMQVMKNIGKHINIVNLMGASTQQGKLCVIIEYCRYGNLRNYLKERRXXXXXXXXXI-----EQLNLFHLTSFCLQVAKGLQYLASKKCIHRDIAARNVLVSENHVVKIADFGLARDVHQTDYYRKCTDGRLPVKWMAMEALFDRVYTIQSDIWSFGILAWEIVTLGGSPYPGIPLERLFDLLKQGYRMERPVNCTEKMYELMLKCWSEQPLRRPKYEDLIDDLEGQISEVSGIDYLDLQPPIIGY 1893
S+N N+K AP ++ ++ ++P N V+ C G + W K+G + HR GG++ NQ L + ++P D+GNYTC ++N+YGS +H+ ++ +E++ P A +G + + H Q I H ++ P + L A N + + +N+ D Y+ +AGN+ G + + PA E + + I I + V I +VV +L R K+ F S + + + P R++ S + RLSS + ++ + Y D KWE D + L LGEG FG+V+++ G+ + P E AVKMLKDDATE +L DL+SEM++MK IGKH NI+NL+GA TQ G L VI+EY GNLR YL+ RRP I EQ+ L S Q+A+G++YLAS+KCIHRD+AARNVLV+EN+V+KIADFGLARD++ DYY+K T+GRLPVKWMA EALFDRVYT QSD+WSFG+L WEI TLGGSPYPGIP+E LF LLK+G+RM++P NCT ++Y +M CW P +RP ++ L++DL+ ++ + +YLDL P+ Y
Sbjct: 145 SENSNNKRAPYWTNTEKMEKRLHAVP--AANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSPHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHV-----------EKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVLPAPGRE--KEITASPDYLEIAIYCIGVFLIACMVVTVILCRMKNT---TKKPDFSSQPAVHKLTKRI-PLRRQVTVSAESSSSMNSNTPLVRITTRLSST-ADTPMLAGVSEYELPEDPKWEFPRDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQDGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQKCIHRDLAARNVLVTENNVMKIADFGLARDINNIDYYKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSPYPGIPVEELFKLLKEGHRMDKPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDRILTLTTNEEYLDLSQPLEQY 779 The following BLAST results are available for this feature:
BLAST of TCONS_00041988 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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