TCONS_00041974 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041974
Unique NameTCONS_00041974
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1653

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041974 ID=TCONS_00041974|Name=TCONS_00041974|organism=Clytia hemisphaerica|type=transcript|length=1653bp
aaaaagtaaaaattattcATTATGGACAAGAAAATGATTTATATACTAGT
CTTGGCGAGTTTTGCTATAAGTCTTGTAAAAAGCGAAACAAAATGTCCAA
AAGAATGTGTATGTAATGATAATGGGGAGGTTTATTGCAATGACGAGGAA
ATCACCGATGAAAGACTTGCGGAGATTGTCAAAGAGATGAATCCAATGAA
AGTTACGCTCTTGACCCTTGACCAAAATCATATTAATAATTTCCAAGCTG
AAAGCTTTAGTAATTTTACCAAACTTGAATTGCTCAGTCTCTCACAAAAT
TCATTGGTCAAATTACCTGCTAACATATCACTCTTTATTCCAAGTATCTA
TTTGCTATATGTTAATGACAACAACATCAGCATCATTAAACAAAAAGACT
TTGAAGGGTATCAATCAATTAAATATCTATACATTCACGAGAATGACATA
GAAAATCTTGAACCAAACGTTTTTAATAACCTTCCTAATCTAGTAGCCTT
GGATTTATCGGGTAACAGATTAAAGACTCTTAAAAACGGAATACTGGATA
ATTTAAAAACACTCGATCGAATAATTCTTGATAACAATGAAATTGCGACT
ATTGAAAATGGGGTATTTAGTAGTATCCCAAAATTAAAGAGAATATACCT
CAGCCATAACAAACTAAACTCAATCACACCTGGTATGTTTGTCTTCAAGG
ATTTCGCACATTCACAGCTACATTTGCAATACAACGGATTGTCATCCATT
GATATTGAAGATGGTGCTTTCAACGTGAAAGATTTGAACTTGGAGAGGAA
CAATATAACATCAGTACGAAAAGAATGGTTTGTATCTATTCCTAGCCGGA
TAAACTTAAAGTACAACCCGTTGACGTGTAATTGTGTTCTCTATGATACA
TTAAACCGTTTTCATAAGGAAGGGTTAGATGTTGAAAATATTGAAGGTTT
TTGCGATATCAACGGTGTTTCTTTGAAAGTATTTCACGCTGAAAATAAAC
TAAATTGTTCTTCTTGCTCTGTGAACAAGtgtcaaaacaatgaaaaatgt
CAAGTTATCGATCAGTTCAATTACAATTGTTCTTGCGAAGAAAAGTACCA
TGGGGAATTCTGCCAATTTGAGAATGCGTGTTTTGAAAACCCATGTCAAC
AAAATGGAAGGTGCCTGAACGTTGAAAACACTTTCAAATGTAATTGTACT
TCAGGATATCATGGAGAGAACTGTGAAATGAAAGATGAATGCCATTTTGG
TAACCCCTGTCAGAATAATGGAACGTGTCGGAGGAATGGTAACAAATCAA
TGAAATACACGTGTGAATGCAATGGAGGTTTTACAGGTCCCAGATGCCAG
TTGACccttgatgaagatgaagacgGGTCACTTGGACTGGATATTGGTTA
CATCATCTTAATAGTGTTGTTGGTAATGACTTGTGTTGGTTTAATAGTTG
GGGTGCTTGTGTTTTTCAGAAGACGAAGAAAGTCAGAGAAAGGAACCATT
AATGAAATGACCATGTCTGGTAAATAAGAACCCTCGCTGAATGACGTATG
TATGATTgaccagagatttgggaaaagaggataagaattgcGCTATTCAG
CTATAGAAATATAGGCTAGGGaaccttttgttctattgaaatATCTGCGC
CCG
Run BLAST on NCBI

protein sequence of TCONS_00041974-protein

>TCONS_00041974-protein ID=TCONS_00041974-protein|Name=TCONS_00041974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
MDKKMIYILVLASFAISLVKSETKCPKECVCNDNGEVYCNDEEITDERLA
EIVKEMNPMKVTLLTLDQNHINNFQAESFSNFTKLELLSLSQNSLVKLPA
NISLFIPSIYLLYVNDNNISIIKQKDFEGYQSIKYLYIHENDIENLEPNV
FNNLPNLVALDLSGNRLKTLKNGILDNLKTLDRIILDNNEIATIENGVFS
SIPKLKRIYLSHNKLNSITPGMFVFKDFAHSQLHLQYNGLSSIDIEDGAF
NVKDLNLERNNITSVRKEWFVSIPSRINLKYNPLTCNCVLYDTLNRFHKE
GLDVENIEGFCDINGVSLKVFHAENKLNCSSCSVNKCQNNEKCQVIDQFN
YNCSCEEKYHGEFCQFENACFENPCQQNGRCLNVENTFKCNCTSGYHGEN
CEMKDECHFGNPCQNNGTCRRNGNKSMKYTCECNGGFTGPRCQLTLDEDE
DGSLGLDIGYIILIVLLVMTCVGLIVGVLVFFRRRRKSEKGTINEMTMSG
K
Run BLAST on NCBI

transcript from alignment at sc0003128:2778..4430

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041974 ID=TCONS_00041974|Name=TCONS_00041974|organism=Clytia hemisphaerica|type=transcript|length=1653bp|location=Sequence derived from alignment at sc0003128:2778..4430 (Clytia hemisphaerica)
CGGGCGCAGATatttcaatagaacaaaaggttCCCTAGCCTATATTTCTA
TAGCTGAATAGCgcaattcttatcctcttttcccaaatctctggtcAATC
ATACATACGTCATTCAGCGAGGGTTCTTATTTACCAGACATGGTCATTTC
ATTAATGGTTCCTTTCTCTGACTTTCTTCGTCTTCTGAAAAACACAAGCA
CCCCAACTATTAAACCAACACAAGTCATTACCAACAACACTATTAAGATG
ATGTAACCAATATCCAGTCCAAGTGACCcgtcttcatcttcatcaaggGT
CAACTGGCATCTGGGACCTGTAAAACCTCCATTGCATTCACACGTGTATT
TCATTGATTTGTTACCATTCCTCCGACACGTTCCATTATTCTGACAGGGG
TTACCAAAATGGCATTCATCTTTCATTTCACAGTTCTCTCCATGATATCC
TGAAGTACAATTACATTTGAAAGTGTTTTCAACGTTCAGGCACCTTCCAT
TTTGTTGACATGGGTTTTCAAAACACGCATTCTCAAATTGGCAGAATTCC
CCATGGTACTTTTCTTCGCAAGAACAATTGTAATTGAACTGATCGATAAC
TTGacatttttcattgttttgacaCTTGTTCACAGAGCAAGAAGAACAAT
TTAGTTTATTTTCAGCGTGAAATACTTTCAAAGAAACACCGTTGATATCG
CAAAAACCTTCAATATTTTCAACATCTAACCCTTCCTTATGAAAACGGTT
TAATGTATCATAGAGAACACAATTACACGTCAACGGGTTGTACTTTAAGT
TTATCCGGCTAGGAATAGATACAAACCATTCTTTTCGTACTGATGTTATA
TTGTTCCTCTCCAAGTTCAAATCTTTCACGTTGAAAGCACCATCTTCAAT
ATCAATGGATGACAATCCGTTGTATTGCAAATGTAGCTGTGAATGTGCGA
AATCCTTGAAGACAAACATACCAGGTGTGATTGAGTTTAGTTTGTTATGG
CTGAGGTATATTCTCTTTAATTTTGGGATACTACTAAATACCCCATTTTC
AATAGTCGCAATTTCATTGTTATCAAGAATTATTCGATCGAGTGTTTTTA
AATTATCCAGTATTCCGTTTTTAAGAGTCTTTAATCTGTTACCCGATAAA
TCCAAGGCTACTAGATTAGGAAGGTTATTAAAAACGTTTGGTTCAAGATT
TTCTATGTCATTCTCGTGAATGTATAGATATTTAATTGATTGATACCCTT
CAAAGTCTTTTTGTTTAATGATGCTGATGTTGTTGTCATTAACATATAGC
AAATAGATACTTGGAATAAAGAGTGATATGTTAGCAGGTAATTTGACCAA
TGAATTTTGTGAGAGACTGAGCAATTCAAGTTTGGTAAAATTACTAAAGC
TTTCAGCTTGGAAATTATTAATATGATTTTGGTCAAGGGTCAAGAGCGTA
ACTTTCATTGGATTCATCTCTTTGACAATCTCCGCAAGTCTTTCATCGGT
GATTTCCTCGTCATTGCAATAAACCTCCCCATTATCATTACATACACATT
CTTTTGGACATTTTGTTTCGCTTTTTACAAGACTTATAGCAAAACTCGCC
AAGACTAGTATATAAATCATTTTCTTGTCCATAATgaataatttttactt
ttt

Coding sequence (CDS) from alignment at sc0003128:2778..4430

>TCONS_00041974 ID=TCONS_00041974|Name=TCONS_00041974|organism=Clytia hemisphaerica|type=CDS|length=1506bp|location=Sequence derived from alignment at sc0003128:2778..4430 (Clytia hemisphaerica)
TTATTTACCAGACATGGTCATTTCATTAATGGTTCCTTTCTCTGACTTTC
TTCGTCTTCTGAAAAACACAAGCACCCCAACTATTAAACCAACACAAGTC
ATTACCAACAACACTATTAAGATGATGTAACCAATATCCAGTCCAAGTGA
CCcgtcttcatcttcatcaaggGTCAACTGGCATCTGGGACCTGTAAAAC
CTCCATTGCATTCACACGTGTATTTCATTGATTTGTTACCATTCCTCCGA
CACGTTCCATTATTCTGACAGGGGTTACCAAAATGGCATTCATCTTTCAT
TTCACAGTTCTCTCCATGATATCCTGAAGTACAATTACATTTGAAAGTGT
TTTCAACGTTCAGGCACCTTCCATTTTGTTGACATGGGTTTTCAAAACAC
GCATTCTCAAATTGGCAGAATTCCCCATGGTACTTTTCTTCGCAAGAACA
ATTGTAATTGAACTGATCGATAACTTGacatttttcattgttttgacaCT
TGTTCACAGAGCAAGAAGAACAATTTAGTTTATTTTCAGCGTGAAATACT
TTCAAAGAAACACCGTTGATATCGCAAAAACCTTCAATATTTTCAACATC
TAACCCTTCCTTATGAAAACGGTTTAATGTATCATAGAGAACACAATTAC
ACGTCAACGGGTTGTACTTTAAGTTTATCCGGCTAGGAATAGATACAAAC
CATTCTTTTCGTACTGATGTTATATTGTTCCTCTCCAAGTTCAAATCTTT
CACGTTGAAAGCACCATCTTCAATATCAATGGATGACAATCCGTTGTATT
GCAAATGTAGCTGTGAATGTGCGAAATCCTTGAAGACAAACATACCAGGT
GTGATTGAGTTTAGTTTGTTATGGCTGAGGTATATTCTCTTTAATTTTGG
GATACTACTAAATACCCCATTTTCAATAGTCGCAATTTCATTGTTATCAA
GAATTATTCGATCGAGTGTTTTTAAATTATCCAGTATTCCGTTTTTAAGA
GTCTTTAATCTGTTACCCGATAAATCCAAGGCTACTAGATTAGGAAGGTT
ATTAAAAACGTTTGGTTCAAGATTTTCTATGTCATTCTCGTGAATGTATA
GATATTTAATTGATTGATACCCTTCAAAGTCTTTTTGTTTAATGATGCTG
ATGTTGTTGTCATTAACATATAGCAAATAGATACTTGGAATAAAGAGTGA
TATGTTAGCAGGTAATTTGACCAATGAATTTTGTGAGAGACTGAGCAATT
CAAGTTTGGTAAAATTACTAAAGCTTTCAGCTTGGAAATTATTAATATGA
TTTTGGTCAAGGGTCAAGAGCGTAACTTTCATTGGATTCATCTCTTTGAC
AATCTCCGCAAGTCTTTCATCGGTGATTTCCTCGTCATTGCAATAAACCT
CCCCATTATCATTACATACACATTCTTTTGGACATTTTGTTTCGCTTTTT
ACAAGACTTATAGCAAAACTCGCCAAGACTAGTATATAAATCATTTTCTT
GTCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025863XLOC_025863Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041974-proteinTCONS_00041974-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041974-exon-sc0003128-1491911889:2778..4430TCONS_00041974-exon-sc0003128-1491911889:2778..4430Clytia hemisphaericaexon
TCONS_00041974-exon-sc0003128-1510915933:2778..4430TCONS_00041974-exon-sc0003128-1510915933:2778..4430Clytia hemisphaericaexon
TCONS_00041974-exon-sc0003128-1575043694:2778..4430TCONS_00041974-exon-sc0003128-1575043694:2778..4430Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003128supercontigsc0003128:2778..4430 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.254617	0.460752	0.555554	0.580845	0.6197	0.437924	0.228916	0.419519	0.182063	0.209476	0.0497835	0.261806	11.3081	7.60829	0.315225	0.746974	0.295103	0.207949	20.5449	22.2541	0.13535	0.300039	0.212942	0.539742	0.131894	0.17449	0.360608	0	0.393183	0.28724
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00041974 vs. Swiss-Prot (Human)
Match: LRC4B (Leucine-rich repeat-containing protein 4B OS=Homo sapiens GN=LRRC4B PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.608e-20
Identity = 81/278 (29.14%), Postives = 139/278 (50.00%), Query Frame = 1 
Query:   88 TKCPKECVC-NDNGEVYCNDEEITDERLAEIVKEMNPMKVTLLTLDQNHINNFQAESFSNFTKLELLSLSQNSLVKLPANISLFIPSIYLLYVNDNNISIIKQKDFEGYQSIKYLYIHENDIENLEPNVFNNLPNLVALDLSG-NRLKTLKNGILDNLKTLDRIILDNNEIATIENGVFSSIPKLKRIYLSHNKLNSITPGMFVFKDFAHSQLHLQYNGLSSIDIEDGAFN----VKDLNLERNNITSVRKEWFVSIP--SRINLKYNPLTCNC-VLY 894
            T CP  C C N    V C     T   LAE+   + P+    L L +N I   + ++F +   LE+L LS+N + K+       +PS+  L + DN ++ +  + FE    ++ L++  N IE++    FN +P+L  LDL    RL+ +     + L  L  + L    +  I N   +++ +L+ + LS N+L+ I PG F     +  +L L +  +++  IE  AF+    +++LNL  NN+ S+  + F  +    R++L +NP  CNC VL+
Sbjct:   55 TSCPVACSCSNQASRVIC-----TRRDLAEVPASI-PVNTRYLNLQENGIQVIRTDTFKHLRHLEILQLSKNLVRKIEVGAFNGLPSLNTLELFDNRLTTVPTQAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLRRLDLGELKRLEYISEAAFEGLVNLRYLNLGMCNLKDIPN--LTALVRLEELELSGNRLDLIRPGSFQGLT-SLRKLWLMHAQVAT--IERNAFDDLKSLEELNLSHNNLMSLPHDLFTPLHRLERVHLNHNPWHCNCDVLW 321
The following BLAST results are available for this feature:
BLAST of TCONS_00041974 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
LRC4B1.608e-2029.14Leucine-rich repeat-containing protein 4B OS=Homo ... [more]
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