TCONS_00041974-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041974-protein
Unique NameTCONS_00041974-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length501

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041974-protein ID=TCONS_00041974-protein|Name=TCONS_00041974-protein|organism=Clytia hemisphaerica|type=polypeptide|length=501bp
MDKKMIYILVLASFAISLVKSETKCPKECVCNDNGEVYCNDEEITDERLA
EIVKEMNPMKVTLLTLDQNHINNFQAESFSNFTKLELLSLSQNSLVKLPA
NISLFIPSIYLLYVNDNNISIIKQKDFEGYQSIKYLYIHENDIENLEPNV
FNNLPNLVALDLSGNRLKTLKNGILDNLKTLDRIILDNNEIATIENGVFS
SIPKLKRIYLSHNKLNSITPGMFVFKDFAHSQLHLQYNGLSSIDIEDGAF
NVKDLNLERNNITSVRKEWFVSIPSRINLKYNPLTCNCVLYDTLNRFHKE
GLDVENIEGFCDINGVSLKVFHAENKLNCSSCSVNKCQNNEKCQVIDQFN
YNCSCEEKYHGEFCQFENACFENPCQQNGRCLNVENTFKCNCTSGYHGEN
CEMKDECHFGNPCQNNGTCRRNGNKSMKYTCECNGGFTGPRCQLTLDEDE
DGSLGLDIGYIILIVLLVMTCVGLIVGVLVFFRRRRKSEKGTINEMTMSG
K
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025863XLOC_025863Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041974TCONS_00041974Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001881EGF-like_Ca-bd_dom
IPR003591Leu-rich_rpt_typical-subtyp
IPR000742EGF-like_dom
IPR032675L_dom-like
IPR001611Leu-rich_rpt
IPR000152EGF-type_Asp/Asn_hydroxyl_site
IPR013032EGF-like_CS
Vocabulary: Molecular Function
TermDefinition
GO:0005509calcium ion binding
GO:0005515protein binding
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005509 calcium ion binding
molecular_function GO:0005515 protein binding
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001881EGF-like calcium-binding domainSMARTSM00179egfca_6coord: 367..402
e-value: 9.8E-4
score: 26.1
coord: 404..443
e-value: 0.041
score: 13.0
IPR003591Leucine-rich repeat, typical subtypeSMARTSM00369LRR_typ_2coord: 178..201
e-value: 11.0
score: 13.0
coord: 202..225
e-value: 3.3
score: 16.7
coord: 106..129
e-value: 240.0
score: 2.0
coord: 251..272
e-value: 290.0
score: 1.3
coord: 154..177
e-value: 0.0086
score: 25.3
coord: 82..105
e-value: 14.0
score: 12.0
coord: 130..153
e-value: 150.0
score: 3.5
IPR000742EGF-like domainSMARTSM00181egf_5coord: 369..402
e-value: 2.4E-4
score: 30.4
coord: 406..443
e-value: 3.0E-6
score: 36.8
coord: 331..365
e-value: 1.2
score: 18.2
IPR000742EGF-like domainPFAMPF00008EGFcoord: 370..400
e-value: 8.1E-7
score: 29.1
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 366..402
score: 19.097
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 328..365
score: 10.926
IPR000742EGF-like domainPROSITEPS50026EGF_3coord: 403..443
score: 21.007
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 230..308
e-value: 7.9E-5
score: 21.3
coord: 113..229
e-value: 1.3E-25
score: 89.2
IPR032675Leucine-rich repeat domain, L domain-likeGENE3D3.80.10.10coord: 14..112
e-value: 7.8E-12
score: 44.0
IPR032675Leucine-rich repeat domain, L domain-likeSUPERFAMILY52058L domain-likecoord: 58..297
IPR001611Leucine-rich repeatPFAMPF13855LRR_8coord: 108..167
e-value: 2.1E-12
score: 46.5
coord: 180..224
e-value: 1.6E-9
score: 37.3
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 132..153
score: 5.995
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 84..105
score: 7.042
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 251..272
score: 6.002
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 60..81
score: 5.055
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 204..225
score: 6.734
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 156..179
score: 7.188
IPR001611Leucine-rich repeatPROSITEPS51450LRRcoord: 180..201
score: 5.856
NoneNo IPR availableGENE3D2.10.25.10coord: 311..368
e-value: 3.0E-5
score: 23.5
NoneNo IPR availableGENE3D2.10.25.10coord: 404..449
e-value: 3.1E-10
score: 39.2
NoneNo IPR availableGENE3D2.10.25.10coord: 369..403
e-value: 3.7E-10
score: 39.3
NoneNo IPR availableCDDcd00054EGF_CAcoord: 372..402
e-value: 3.40648E-7
score: 46.0906
NoneNo IPR availableCDDcd00054EGF_CAcoord: 405..443
e-value: 2.38765E-7
score: 46.4758
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 368..404
NoneNo IPR availableSUPERFAMILY57196EGF/Laminincoord: 405..447
IPR000152EGF-type aspartate/asparagine hydroxylation sitePROSITEPS00010ASX_HYDROXYLcoord: 381..392
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 353..364
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 431..442
IPR013032EGF-like, conserved sitePROSITEPS01186EGF_2coord: 390..401
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 390..401
IPR013032EGF-like, conserved sitePROSITEPS00022EGF_1coord: 431..442

Blast
[Close]
BLAST of TCONS_00041974-protein vs. Swiss-Prot (Human)
Match: SLIT2 (Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 5.338e-23
Identity = 108/398 (27.14%), Postives = 168/398 (42.21%), Query Frame = 0 
Query:   87 LLSLSQNSLVKLPANISLFIPSIYLLYVNDNNISIIKQKDFEGYQSIKYLYIHENDIENLEPNVFNNLPNLVALDLSGNRLKTLKNGILDNLKTLDRIILDNNEIATIENGVFSSIPKLKRIYLSHNKLNSITPGMFVFKDFAHSQLHLQYNGLSSIDIEDGAFNVKDLNLERNNITSVRKEWFVSIPSRINL--KYNPL---------TCNCVLYDTLN-----RFHKEGLDVE---NIEGFCDING--------------VSLKVFHAEN-KLNCSSCSVNKCQNNEKCQVIDQFN-YNCSCEEKYHGEFCQFE-NACFE--NPCQQNGRCLNVENTFKCNCTSGYHGENCEMK-DECHFGNPCQNNGTCRRNGNKSMKYTCECNGGFTGPRCQLT 445
            ++  S   L  LP  I   +  +YL    D N   +  K+   Y+ +  + +  N I  L    F+N+  L+ L LS NRL+ +     D LK+L  + L  N+I+ +  G F+ +  L  + +  N L      M    D+  S+   +  G++      G   + D  L    +T+  K++    P  +N+  K NP          TCN    D         F  +  DV     I   C   G              +    F  EN ++N   C  N C+NN  C  +D  N Y C C  +Y GE C+ + + C +  NPCQ + +C+     FKC+CT GY GE+C++  D+C   N C+N   C    N    YTC C  G++G  C+ +
Sbjct:  737 VVRCSNKGLKVLPKGIPRDVTELYL----DGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDC-NMQWLSDWVKSEY--KEPGIARCA---GPGEMADKLL----LTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCEDNDCENNSTC--VDGINNYTCLCPPEYTGELCEEKLDFCAQDLNPCQHDSKCILTPKGFKCDCTPGYVGEHCDIDFDDCQ-DNKCKNGAHCTDAVN---GYTCICPEGYSGLFCEFS 1114

HSP 2 Score: 102.064 bits (253), Expect = 1.130e-22
Identity = 96/313 (30.67%), Postives = 141/313 (45.05%), Query Frame = 0 
Query:  156 NLVALDLSGNRLKTLKNGILDNLKTLDRIILDNNEIATIENGVFSSIPKLKRIYLSHNKLNSITPGMFVFKDFAHSQLHLQYNGLSSIDIEDGAFNVKDLNLERNNITSVRKEWF--VSIPSRINLKYNPLTCNC---VLYDTLNRFHKEGLDVENIEGFCDINGVSL-----KVFHAENKLN------CSSCSVNKCQNNEKCQVIDQFNYNCSCEEKYHGEFCQFE-NACFENPCQQNGRCL---NVENTFKCNCTSGYHGENCEMK-DECHFGNPCQNNGTCRRNGNKSMKYTCECNGGFTGPRCQLTLD 447
            ++  L L GN+  TL    L N K L  I L NN I+T+ N  FS++ +L  + LS+N+L  I P  F                       DG  +++ L+L  N+I+ V +  F  +S  S + +  NPL C+C    L D +   +KE   +    G  ++    L     K F  +  ++      C+ C  N C+N+  C       Y C+C   + G+ C    +AC  NPC+  G C      E+ F C C  G+ GENCE+  D+C   N C+NN TC    N    YTC C   +TG  C+  LD
Sbjct:  755 DVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTF-----------------------DGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEP-GIARCAGPGEMADKLLLTTPSKKFTCQGPVDVNILAKCNPCLSNPCKNDGTCNSDPVDFYRCTCPYGFKGQDCDVPIHACISNPCKHGGTCHLKEGEEDGFWCICADGFEGENCEVNVDDCE-DNDCENNSTCVDGIN---NYTCLCPPEYTGELCEEKLD 1038
The following BLAST results are available for this feature:
BLAST of TCONS_00041974-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SLIT25.338e-2327.14Slit homolog 2 protein OS=Homo sapiens GN=SLIT2 PE... [more]
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