TCONS_00041961 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041961
Unique NameTCONS_00041961
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length340

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041961 ID=TCONS_00041961|Name=TCONS_00041961|organism=Clytia hemisphaerica|type=transcript|length=340bp
GCTTCAAGACAGTTTCGAAAAGTGAAGAAAGTGATCAACCACGGTGGATT
CATTTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAGTTGGATCAAG
AAGTGCAGATCAACGACTATGTTCGACCTGCGTGCTTGTTGGAGAAAGAA
CTAGCTGCAGGAACAAAAGTTGTTATTTCTGGCTGGGGAACAACGCAAGA
AGGAAGCCGACCCAATATTCTCCAAAAAGCTGAGgtggACATTGTTAGTA
ATAGTGTATGCAACACGAAATATGATAATGGTATTGATAATTCAATGTTA
TGTGCTGCTGCTCCAGGGAAAGACTCATGTCAAGTAAGAT
Run BLAST on NCBI

protein sequence of TCONS_00041961-protein

>TCONS_00041961-protein ID=TCONS_00041961-protein|Name=TCONS_00041961-protein|organism=Clytia hemisphaerica|type=polypeptide|length=113bp
ASRQFRKVKKVINHGGFISSTLSNDISLFELDQEVQINDYVRPACLLEKE
LAAGTKVVISGWGTTQEGSRPNILQKAEVDIVSNSVCNTKYDNGIDNSML
CAAAPGKDSCQVR
Run BLAST on NCBI

transcript from alignment at sc0003119:8897..10290+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041961 ID=TCONS_00041961|Name=TCONS_00041961|organism=Clytia hemisphaerica|type=transcript|length=1394bp|location=Sequence derived from alignment at sc0003119:8897..10290+ (Clytia hemisphaerica)
GCTTCAAGACAGTTTCGAAAAGTGAAGAAAGTGATCAACCACGGTGGATT
CATTTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAGTTGGATCAAG
AAGTGCAGATCAACGACTATGTTCGACCTGCGTGCTTGTTGGAGAAAGAA
CTAGCTGCAGGAACAAAAGTTGTTATTTCTGGCTGGGGAACAACGCAAGA
AGGAAGCCGACCCAATATTCTCCAAAAAGCTGAGGTAGCTTATTTATGTG
ATGGTGTTGTGAAGCCTATAAATTGATTTCAATGTCAATTTAGAGCAAAT
CGGGCATAACATGTTGTAATATGACCAATATTGCATACTAAAAAAAGATC
ACTCGTCAACCttctgaccatagtcgaaaaattgatattggtatttgaac
ataaaagttgtGTTccattaagaatttaattgcaaaaatgacgctatgta
ctttaaaaagacgttctTTTACGAAAATTGCTTAGTTGATGGGTGATtaa
cctttttcttttggaGTTATTTCAGAATGTTCGCAAGGacttgaactgtt
ttaaatttttcggataAACTTTCTAAATTGATACATTAAAAGTTATGAca
gtttttgtagaaaaattgggatgaaaaatttggttaaaaagcactatttt
ccaaatgttttcttcgccgaaaataagctctttaaagttgaaatactctt
ctttacAAAAGTCGTCATCAAATCGTtccattgcgattcttaaattttca
gactcaaggatgTATGGTCTAAAATGGGcctaaaaaatgtaaaacatgCC
AAAATTTTGTTAGCTAACATCagggagaaatttttattatgttCCTTGCA
AATATCAAAAGCCCCTAAgggggcccccagcggtttgcgtgattgcgtga
atgggcattttcggttgcgtgaatgtgtataaattgaaaaaaaaatgcgt
gaattgaaaaaacttgcgtgaacgtgaaaatgtctttttgattgcgtgaa
tgcgtgaatttgggctattttgtgcgtgaatacgtgagtTTTCTCTTTTT
CCCACCGATCATGTGcagttttcccaattttccaatgttttcccgatttt
tcccaaaaaaaattccgatttctgaaaaattgggttattgcgtgaaactc
gaggaaaatttgcgtgaatgcgtgaatttcgaaaaaaaattgcgtgattg
cgtgaattgagggtccgctgagGCTCCTTTGTTTTTAGAGTCTGCTAACT
CTGATACAAGTTCTGAAACATcgtctttttattttcaggtggACATTGTT
AGTAATAGTGTATGCAACACGAAATATGATAATGGTATTGATAATTCAAT
GTTATGTGCTGCTGCTCCAGGGAAAGACTCATGTCAAGTAAGAT

Coding sequence (CDS) from alignment at sc0003119:8897..10290+

>TCONS_00041961 ID=TCONS_00041961|Name=TCONS_00041961|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0003119:8897..10290+ (Clytia hemisphaerica)
GCTTCAAGACAGTTTCGAAAAGTGAAGAAAGTGATCAACCACGGTGGATT
CATTTCCAGTACACTCTCAAACGATATTTCTTTGTTTGAGTTGGATCAAG
AAGTGCAGATCAACGACTATGTTCGACCTGCGTGCTTGTTGGAGAAAGAA
CTAGCTGCAGGAACAAAAGTTGTTATTTCTGGCTGGGGAACAACGCAAGA
AGGAAGCCGACCCAATATTCTCCAAAAAGCTGAGgtggACATTGTTAGTA
ATAGTGTATGCAACACGAAATATGATAATGGTATTGATAATTCAATGTTA
TGTGCTGCTGCTCCAGGGAAAGACTCATGTCAAGTAAGAGCTTCAAGACA
GTTTCGAAAAGTGAAGAAAGTGATCAACCACGGTGGATTCATTTCCAGTA
CACTCTCAAACGATATTTCTTTGTTTGAGTTGGATCAAGAAGTGCAGATC
AACGACTATGTTCGACCTGCGTGCTTGTTGGAGAAAGAACTAGCTGCAGG
AACAAAAGTTGTTATTTCTGGCTGGGGAACAACGCAAGAAGGAAGCCGAC
CCAATATTCTCCAAAAAGCTGAGgtggACATTGTTAGTAATAGTGTATGC
AACACGAAATATGATAATGGTATTGATAATTCAATGTTATGTGCTGCTGC
TCCAGGGAAAGACTCATGTCAAGTAAGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025851XLOC_025851Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041961-proteinTCONS_00041961-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041961-exon-sc0003119-1491911889:8897..9130TCONS_00041961-exon-sc0003119-1491911889:8897..9130Clytia hemisphaericaexon
TCONS_00041961-exon-sc0003119-1510915933:8897..9130TCONS_00041961-exon-sc0003119-1510915933:8897..9130Clytia hemisphaericaexon
TCONS_00041961-exon-sc0003119-1575043694:8897..9130TCONS_00041961-exon-sc0003119-1575043694:8897..9130Clytia hemisphaericaexon
TCONS_00041961-exon-sc0003119-1491911889:10185..10290TCONS_00041961-exon-sc0003119-1491911889:10185..10290Clytia hemisphaericaexon
TCONS_00041961-exon-sc0003119-1510915933:10185..10290TCONS_00041961-exon-sc0003119-1510915933:10185..10290Clytia hemisphaericaexon
TCONS_00041961-exon-sc0003119-1575043694:10185..10290TCONS_00041961-exon-sc0003119-1575043694:10185..10290Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003119supercontigsc0003119:8897..10290 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	4.10889	3.24849	0	0	0.203304	0.20838	65.1008	64.9317	2.40019	3.38335	2.48414	3.62465	0.290768	0.519007	16.8057	18.1865	0.0489753	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001254Trypsin_dom
IPR009003Peptidase_S1_PA
Vocabulary: Molecular Function
TermDefinition
GO:0004252serine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004252 serine-type endopeptidase activity
Blast
[Close]
BLAST of TCONS_00041961 vs. Swiss-Prot (Human)
Match: TMPSC (Transmembrane protease serine 12 OS=Homo sapiens GN=TMPRSS12 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.797e-17
Identity = 42/96 (43.75%), Postives = 57/96 (59.38%), Query Frame = 1 
Query:   40 HGGFISSTLSNDISLFELDQEVQINDYVRPACL---LEKELAAGTKVVISGWG-TTQEGSRPNILQKAEVDIVSNSVCNTKYDNG--IDNSMLCAA 309
            H  FI  +  NDI+LF L + V+ NDY++P CL   + + L   TK  ISGWG T +EG+  NILQ AEV  +S  +CN++   G  I N+  CA 
Sbjct:  160 HPNFILESYVNDIALFHLKKAVRYNDYIQPICLPFDVFQILDGNTKCFISGWGRTKEEGNATNILQDAEVHYISREMCNSERSYGGIIPNTSFCAG 255
The following BLAST results are available for this feature:
BLAST of TCONS_00041961 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TMPSC1.797e-1743.75Transmembrane protease serine 12 OS=Homo sapiens G... [more]
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