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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041950 ID=TCONS_00041950|Name=TCONS_00041950|organism=Clytia hemisphaerica|type=transcript|length=1328bp
GATATTTCGACcagtcaaattattcaaaaacatCTTCGTTCTCTCCACTC
ACAAGTAAATTAAACTAGTATCTGTATTTCTTTTTCCATCTGCATTTCTG
TCTCCTATTCATATGTTTGAGTAGTGCGTGTGTGAAAGTGTTGAACTCCT
CTTGCGTGTGCTAgagtgttttgaatttttttttttgatttttttttttt
tttttgatttttttttttttttttgatttttttttttttttttgattttt
ttttttttttttgattttctgattttgattttttgtttttctcataTGTT
TGAGACTTTCTTTTgactttagatttttttgaattttgtttccAGATTTT
TCGCTTGCcgtttttgagatattttgcattttttgtcgataatttttgat
ttttatttctttgaactTCCTGTCACTTTTTTGAGCTGAGTTTTGAGTCC
GTATACTAACGTGGTATCGTTGTTCGCACACTAGACGTAGTGTCGTTTGT
TCCGTGCAATAGACGTGTTGCCGTGGGGTTTCCATTGGTTGGAAACCATT
GTGAAGTCTTGTCTTTAGCACAAGCATTTTGTGGCCAAATTATTCTTCAG
AGAGCGAGAATTGCTTTGTTCCTGTGTGAACACGCGTTGTAACTCAGTAA
AGCGACTTTGGTTTGTTcgagatttttgtttagtttgtttttttttttga
ctttttaatttttattcattttgtattttggGATCGGTTTGATCTTcgct
tgaaaagaaatttgaagtttgatcattttttgcattttttggtcCGTCAC
CAActagaattttgatttttcattgtTTAGTCTCCCCATAGGGAGAgtgt
tttgaaattgttttgtctCTTCTGagatttgttttattggtttttaTTAT
AGCTATTTCTCCTTTTTCTCATCCTGAGAAGAGTTTTATGTTAATTATCT
TTTAGTTCGCACGGTTTTGAGTGTTGATTGCCATATAGTTGTCATAACAT
AACTTTTATTAAGAATTTTGGATGTTAATCACTTAAGTGTGAAAATCCAC
CTAGATTTTATATTGAACATCAtatataataacaataatacaaTTTTGGT
TTCTGGATGTTAATCACTTAAGTGTTGAAAATCCAGCTAGGTTAGGTTTT
CGCCTGAAATTTTGTCAtcgtttataagaacattatacCATCCTTGTTCC
ACAAATTTTTATCTGTCATGTCTGCCCATGGAAAATTTCATGCTGAAATA
TTTGGCAAGATTAAATCACTTGAAAGGTTGTTATGTCATGTGTCATCTGA
GTtgaaagctttgaaaaatatttatgtt Run BLAST on NCBI protein sequence of TCONS_00041950-protein >TCONS_00041950-protein ID=TCONS_00041950-protein|Name=TCONS_00041950-protein|organism=Clytia hemisphaerica|type=polypeptide|length=138bp
MLVLKTRLHNGFQPMETPRQHVYCTEQTTLRLVCEQRYHVSIRTQNSAQK
SDRKFKEIKIKNYRQKMQNISKTASEKSGNKIQKNLKSKESLKHMRKTKN
QNQKIKKKKKNQKKKKKSKKKKKIKKKKKNQKKKFKTL Run BLAST on NCBI transcript from alignment at sc0003111:4008..5335 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041950 ID=TCONS_00041950|Name=TCONS_00041950|organism=Clytia hemisphaerica|type=transcript|length=1328bp|location=Sequence derived from alignment at sc0003111:4008..5335 (Clytia hemisphaerica)
aacataaatatttttcaaagctttcaACTCAGATGACACATGACATAACA
ACCTTTCAAGTGATTTAATCTTGCCAAATATTTCAGCATGAAATTTTCCA
TGGGCAGACATGACAGATAAAAATTTGTGGAACAAGGATGgtataatgtt
cttataaacgaTGACAAAATTTCAGGCGAAAACCTAACCTAGCTGGATTT
TCAACACTTAAGTGATTAACATCCAGAAACCAAAAttgtattattgttat
tatataTGATGTTCAATATAAAATCTAGGTGGATTTTCACACTTAAGTGA
TTAACATCCAAAATTCTTAATAAAAGTTATGTTATGACAACTATATGGCA
ATCAACACTCAAAACCGTGCGAACTAAAAGATAATTAACATAAAACTCTT
CTCAGGATGAGAAAAAGGAGAAATAGCTATAAtaaaaaccaataaaacaa
atctCAGAAGagacaaaacaatttcaaaacacTCTCCCTATGGGGAGACT
AAacaatgaaaaatcaaaattctagTTGGTGACGgaccaaaaaatgcaaa
aaatgatcaaacttcaaatttcttttcaagcgAAGATCAAACCGATCcca
aaatacaaaatgaataaaaattaaaaagtcaaaaaaaaaaacaaactaaa
caaaaatctcgAACAAACCAAAGTCGCTTTACTGAGTTACAACGCGTGTT
CACACAGGAACAAAGCAATTCTCGCTCTCTGAAGAATAATTTGGCCACAA
AATGCTTGTGCTAAAGACAAGACTTCACAATGGTTTCCAACCAATGGAAA
CCCCACGGCAACACGTCTATTGCACGGAACAAACGACACTACGTCTAGTG
TGCGAACAACGATACCACGTTAGTATACGGACTCAAAACTCAGCTCAAAA
AAGTGACAGGAagttcaaagaaataaaaatcaaaaattatcgacaaaaaa
tgcaaaatatctcaaaaacgGCAAGCGAAAAATCTggaaacaaaattcaa
aaaaatctaaagtcAAAAGAAAGTCTCAAACAtatgagaaaaacaaaaaa
tcaaaatcagaaaatcaaaaaaaaaaaaaaaaatcaaaaaaaaaaaaaaa
aatcaaaaaaaaaaaaaaaaatcaaaaaaaaaaaaaaaaatcaaaaaaaa
aaattcaaaacactcTAGCACACGCAAGAGGAGTTCAACACTTTCACACA
CGCACTACTCAAACATATGAATAGGAGACAGAAATGCAGATGGAAAAAGA
AATACAGATACTAGTTTAATTTACTTGTGAGTGGAGAGAACGAAGatgtt
tttgaataatttgactgGTCGAAATATC Coding sequence (CDS) from alignment at sc0003111:4008..5335 >TCONS_00041950 ID=TCONS_00041950|Name=TCONS_00041950|organism=Clytia hemisphaerica|type=CDS|length=417bp|location=Sequence derived from alignment at sc0003111:4008..5335 (Clytia hemisphaerica)
ATGCTTGTGCTAAAGACAAGACTTCACAATGGTTTCCAACCAATGGAAAC
CCCACGGCAACACGTCTATTGCACGGAACAAACGACACTACGTCTAGTGT
GCGAACAACGATACCACGTTAGTATACGGACTCAAAACTCAGCTCAAAAA
AGTGACAGGAagttcaaagaaataaaaatcaaaaattatcgacaaaaaat
gcaaaatatctcaaaaacgGCAAGCGAAAAATCTggaaacaaaattcaaa
aaaatctaaagtcAAAAGAAAGTCTCAAACAtatgagaaaaacaaaaaat
caaaatcagaaaatcaaaaaaaaaaaaaaaaatcaaaaaaaaaaaaaaaa
atcaaaaaaaaaaaaaaaaatcaaaaaaaaaaaaaaaaatcaaaaaaaaa
aattcaaaacactcTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041950-exon-sc0003111-1491911889:4008..5335 | TCONS_00041950-exon-sc0003111-1491911889:4008..5335 | Clytia hemisphaerica | exon |
| TCONS_00041950-exon-sc0003111-1510915933:4008..5335 | TCONS_00041950-exon-sc0003111-1510915933:4008..5335 | Clytia hemisphaerica | exon |
| TCONS_00041950-exon-sc0003111-1575043694:4008..5335 | TCONS_00041950-exon-sc0003111-1575043694:4008..5335 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003111 | supercontig | sc0003111:4008..5335 . |
Blast
The following BLAST results are available for this feature:
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