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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041933 ID=TCONS_00041933|Name=TCONS_00041933|organism=Clytia hemisphaerica|type=transcript|length=749bp
TATTTTACAAACTGACGATGGCATGCAGTTGCTTCAAGATATTGGATACC
GAGGCAACCCGTTATGCGTTGATATAAAATGGAAAGAAACTATACTGCGa
acCATGTTTATCAAAGAGAAGATAGAAATCTTAAACTTGATATCAAAACT
TTCGGAGGGAATGGCGGTTTATGGTGGCCTTTCAATCATAAAGGAAAATA
TTGAAACCTTCCGTCCGGTATTTACTGAAACGCATTTATTCGAATGGACT
TACGAAAGAGTCTACGAAGTATTGAAACCAGATTTTAAAGGGGCAATTGG
ATCGAACAAAAGACAGGCAGAGATAAATACTTTCAAATCATTTCTCGACT
TCATGGAAGAATCCTTCAAAAGTGaaTCGTCGAAAATAAAACCGGGTAAA
ATCATGGCAACGATCACGGGATGTGAGACTATACCTCCACTTGGTCTCCC
TATGAAGATTACCGTCAATTTCGTGACAGATTGCAAGCCTTCGCAGCAAG
GTACACCATGTACGTGCCTTCCAGTGTTCAGCACATGTTCCTTGAGTGTT
GACATACCAGTACATATAACTTCTATGGAAGAAGCATTCGACAAAGCGTT
CAAGATGGGAAAAGGTTTTCTTCTCACGTAGACATTGTTTTACAAAAGAT
TGGACTTTACGTTGATATTATGCCATCTTATGTTATTTTATTGCATAGTA
GTACATTAGATTAGTGCGTACTTTAGTATTTTTTTGGACATACTGCTTg Run BLAST on NCBI protein sequence of TCONS_00041933-protein >TCONS_00041933-protein ID=TCONS_00041933-protein|Name=TCONS_00041933-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
ILQTDDGMQLLQDIGYRGNPLCVDIKWKETILRTMFIKEKIEILNLISKL
SEGMAVYGGLSIIKENIETFRPVFTETHLFEWTYERVYEVLKPDFKGAIG
SNKRQAEINTFKSFLDFMEESFKSESSKIKPGKIMATITGCETIPPLGLP
MKITVNFVTDCKPSQQGTPCTCLPVFSTCSLSVDIPVHITSMEEAFDKAF
KMGKGFLLT Run BLAST on NCBI transcript from alignment at sc0003104:6356..9054- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041933 ID=TCONS_00041933|Name=TCONS_00041933|organism=Clytia hemisphaerica|type=transcript|length=2699bp|location=Sequence derived from alignment at sc0003104:6356..9054- (Clytia hemisphaerica)
TATTTTACAAACTGACGATGGCATGCAGTTGCTTCAAGATATTGGATACC
GAGGCAACCCGTTATGCGTTGATATAAAATGGAAAGAAACTATACTGCGG
TAAATAATATCAATCATTCTTTGCAGGGGGACTTGGCAGGAACTTCTCCC
CGGCGTTAAAAAGCTCGGCATATTCCAAACTCGTATAAGGTGGCCCTTAT
ACATAGGGTCATACATGTTTTTTTATAAGCGTTGCACTTGTAAGCATATC
TAGGCTCAGATATGGGGAAAAATTAAGCATATGGCAAGCATTACTTGAGC
TTACCAAAAAATTTTTTTACCTGATTTTGGCTTTTTCTGGCTGGAATTTT
ACGGATTTTCAGTATTTCCCTAAATTTTTGCTCTGGATATAAGCATCCCT
CAAGCATTTTTTCATCCTTATAAAGCTTTCGACCTAAGCATCTCTGAGCC
TGTTTTCGGATTTTTGTATGCTTATAAAAAAAATATGTAGACTGGATATT
AATTCCATATAAAATCATCCAACGCATGAAACCCTTAGGTCTCAGAAATC
TTTAATTTTTATCCGACATTTTGAATTTGGTTTTTCTCGATAACTTGGGA
AAGTAGCTAGTTGTTGAAATTTTGCATGGGAAAGATTTTTGACATGGAGA
ATTCCAAAATCTTTCTTAAAATAACCAAAAATCAAAAATATCAATGTTAT
AAAAGGTTTTTAACGAGCAGAAATGGAACCGAAAAGGGGTGTTTTTATAC
AAAGCAGCTATTTCACCCAAAATTTCAAAGGTGTTAACTGCTGAAATTTT
GAGGGTTCTAAGATCCAATGGTGTCATCTGTAATTATTTTTTGGATAATT
TGGCATGGAATTACCCTGCCCTGGAATAAGATTCTAAGACTCACGACTTA
ATAGAAAATCTATTTACAGAAGATGTTAGAAAGAAACTTTTTGCTATTTT
TAGAACCATGTTTATCAAAGAGAAGATAGAAATCTTAAACTTGATATCAA
AACTTTCGGAGGGAATGGCGGTTTATGGTGGCCTTTCAATCATAAAGGAA
AATATTGAAACCTTCCGTCCGGTATTTACTGAAACGCATTTATTCGAATG
GACTTACGAAAGAGTCTACGAAGTATTGAAACCAGATTTTAAAGGGGCAA
TTGGATCGAACAAAAGACAGGCAGAGATAAATACTTTCAAATCATTTCTC
GACTTCATGGAAGAATCCTTCAAAAGTGGTAAGAATGTTTTTGTCATAAA
ACAAATATCTTAAGTGAAGAAATTTTGGTGTGGATTTAAAATTTGGCGCA
GCAAGAATTTTTCAAAAATGTCGTAGACCTTTTTAGTTTAATCAGAATTG
ATTATCGCCCTATAATGATACACAGTAAGATTTTATGAAGCTTGAAATGT
CTTCTTTAGGCGTACACATTTTCTTGAGGATAAACTTTCGCGAATAGACG
ATATCGGCTTTCTNACACAGTAAGATTTTATGAAGCTTGAAATGTCTTCT
TTAGGCGTACACATTTTCTTGAGGATAAACTTTCGCGAATAGACGATATC
GGCTTTCTGAATTCTTCCCGAATGATTTCCCATGATGTATTGCGCAAAAA
AATTCGTCAATTCAATATCGTCCATGAATTTTTTTGCGCAATGCATCATG
GGTAATCATTCGGGGAGAATTTGGAAAGCCGATATCATATATTGCTTAAT
TTGAAATAATTTCGTAATAAGAAATAAAACTTGGTGCGGATTTAATTTGG
CGATTTTCGACATTTTCCGCCAATTTCATTCTGATCATCTATCTAAATTT
GATGAAAAATTAAAGTCCTCAAACCTTGGATCCATTTATATCATTCAAAG
CCCAATAAAATGATATAGAAGAATTTAAAAAATGGTACTTTAGTAGGATG
AAATTATGCGAGATTAAATTTCGGGAATGACCCAAAAAAGGGACTTATTT
TACCAAAATTACATGGTTTTGACAACTTCTTTTGCTAAAATGGTATTTTT
AAAAATTTCGCTTGGATTTAATTTCGCGAATCGACGAACCCACGTAATTT
TGCGAGTTTTTATTTCGCGAAAAGGGCATAAAATCGCGAAATTTAATCTC
GTGAAGCTTAATCCTTCTAAAGTATGAAGTACCTCTCGAAGTACCGCGAA
AATTTCTTCCGCGAAAGTTTCTTCCCTTAAGGTAATTTGATGAGGATACT
AAACTTTTTTTCATTCAATGAACCAAGAAAATTTCACTCCAGAAATTTTA
TTCAAGGGCCTTAGGAATTGCACTTATAGATACGCCTAGATTGAAATGGT
ATAAAAGAATTTGTTTTGTTTTAGAATCGTCGAAAATAAAACCGGGTAAA
ATCATGGCAACGATCACGGGATGTGAGACTATACCTCCACTTGGTCTCCC
TATGAAGATTACCGTCAATTTCGTGACAGATTGCAAGCCTTCGCAGCAAG
GTACACCATGTACGTGCCTTCCAGTGTTCAGCACATGTTCCTTGAGTGTT
GACATACCAGTACATATAACTTCTATGGAAGAAGCATTCGACAAAGCGTT
CAAGATGGGAAAAGGTTTTCTTCTCACGTAGACATTGTTTTACAAAAGAT
TGGACTTTACGTTGATATTATGCCATCTTATGTTATTTTATTGCATAGTA
GTACATTAGATTAGTGCGTACTTTAGTATTTTTTTGGACATACTGCTTG Coding sequence (CDS) from alignment at sc0003104:6356..9054- >TCONS_00041933 ID=TCONS_00041933|Name=TCONS_00041933|organism=Clytia hemisphaerica|type=CDS|length=1890bp|location=Sequence derived from alignment at sc0003104:6356..9054- (Clytia hemisphaerica)
AATCGTCGAAAATAAAACCGGGTAAAATCATGGCAACGATCACGGGATGT
GAGACTATACCTCCACTTGGTCTCCCTATGAAGATTACCGTCAATTTCGT
GACAGATTGCAAGCCTTCGCAGCAAGGTACACCATGTACGTGCCTTCCAG
TGTTCAGCACATGTTCCTTGAGTGTTGACATACCAGTACATATAACTTCT
ATGGAAGAAGCATTCGACAAAGCGTTCAAGATGGGAAAAGGTTTTCTTCT
CACGTAGAACCATGTTTATCAAAGAGAAGATAGAAATCTTAAACTTGATA
TCAAAACTTTCGGAGGGAATGGCGGTTTATGGTGGCCTTTCAATCATAAA
GGAAAATATTGAAACCTTCCGTCCGGTATTTACTGAAACGCATTTATTCG
AATGGACTTACGAAAGAGTCTACGAAGTATTGAAACCAGATTTTAAAGGG
GCAATTGGATCGAACAAAAGACAGGCAGAGATAAATACTTTCAAATCATT
TCTCGACTTCATGGAAGAATCCTTCAAAAGTGATTTTACAAACTGACGAT
GGCATGCAGTTGCTTCAAGATATTGGATACCGAGGCAACCCGTTATGCGT
TGATATAAAATGGAAAGAAACTATACTGCGAATCGTCGAAAATAAAACCG
GGTAAAATCATGGCAACGATCACGGGATGTGAGACTATACCTCCACTTGG
TCTCCCTATGAAGATTACCGTCAATTTCGTGACAGATTGCAAGCCTTCGC
AGCAAGGTACACCATGTACGTGCCTTCCAGTGTTCAGCACATGTTCCTTG
AGTGTTGACATACCAGTACATATAACTTCTATGGAAGAAGCATTCGACAA
AGCGTTCAAGATGGGAAAAGGTTTTCTTCTCACGTAGAACCATGTTTATC
AAAGAGAAGATAGAAATCTTAAACTTGATATCAAAACTTTCGGAGGGAAT
GGCGGTTTATGGTGGCCTTTCAATCATAAAGGAAAATATTGAAACCTTCC
GTCCGGTATTTACTGAAACGCATTTATTCGAATGGACTTACGAAAGAGTC
TACGAAGTATTGAAACCAGATTTTAAAGGGGCAATTGGATCGAACAAAAG
ACAGGCAGAGATAAATACTTTCAAATCATTTCTCGACTTCATGGAAGAAT
CCTTCAAAAGTGATTTTACAAACTGACGATGGCATGCAGTTGCTTCAAGA
TATTGGATACCGAGGCAACCCGTTATGCGTTGATATAAAATGGAAAGAAA
CTATACTGCGAATCGTCGAAAATAAAACCGGGTAAAATCATGGCAACGAT
CACGGGATGTGAGACTATACCTCCACTTGGTCTCCCTATGAAGATTACCG
TCAATTTCGTGACAGATTGCAAGCCTTCGCAGCAAGGTACACCATGTACG
TGCCTTCCAGTGTTCAGCACATGTTCCTTGAGTGTTGACATACCAGTACA
TATAACTTCTATGGAAGAAGCATTCGACAAAGCGTTCAAGATGGGAAAAG
GTTTTCTTCTCACGTAGAACCATGTTTATCAAAGAGAAGATAGAAATCTT
AAACTTGATATCAAAACTTTCGGAGGGAATGGCGGTTTATGGTGGCCTTT
CAATCATAAAGGAAAATATTGAAACCTTCCGTCCGGTATTTACTGAAACG
CATTTATTCGAATGGACTTACGAAAGAGTCTACGAAGTATTGAAACCAGA
TTTTAAAGGGGCAATTGGATCGAACAAAAGACAGGCAGAGATAAATACTT
TCAAATCATTTCTCGACTTCATGGAAGAATCCTTCAAAAGTGATTTTACA
AACTGACGATGGCATGCAGTTGCTTCAAGATATTGGATACCGAGGCAACC
CGTTATGCGTTGATATAAAATGGAAAGAAACTATACTGCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041933-exon-sc0003104-1575043694:8956..9054 | TCONS_00041933-exon-sc0003104-1575043694:8956..9054 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1575043694:7827..8101 | TCONS_00041933-exon-sc0003104-1575043694:7827..8101 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1575043694:6356..6730 | TCONS_00041933-exon-sc0003104-1575043694:6356..6730 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1510915933:8956..9054 | TCONS_00041933-exon-sc0003104-1510915933:8956..9054 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1510915933:7827..8101 | TCONS_00041933-exon-sc0003104-1510915933:7827..8101 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1510915933:6356..6730 | TCONS_00041933-exon-sc0003104-1510915933:6356..6730 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1491911889:8956..9054 | TCONS_00041933-exon-sc0003104-1491911889:8956..9054 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1491911889:7827..8101 | TCONS_00041933-exon-sc0003104-1491911889:7827..8101 | Clytia hemisphaerica | exon |
| TCONS_00041933-exon-sc0003104-1491911889:6356..6730 | TCONS_00041933-exon-sc0003104-1491911889:6356..6730 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003104 | supercontig | sc0003104:6356..9054 - |
Blast
The following BLAST results are available for this feature:
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