TCONS_00041906 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041906
Unique NameTCONS_00041906
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length443

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041906 ID=TCONS_00041906|Name=TCONS_00041906|organism=Clytia hemisphaerica|type=transcript|length=443bp
GtgcaatattcacttttttgcctttgacgtcaaatacaatATGAACGGCC
ACGCTCTTGcgaatgaatgaaaaagaatggcaacaatcgatgaaaaatcc
actgaaaatgctgaaaattatGGATCCTGTACCGCCAAAGAGAAGAAGAT
CGCTGGAAAAACTTAACTAGATGTAACATCATTGTCCATCATTTAGGTGA
AAATAAAGATGAGAACAAAGAGGAACAGCAGGCCGGTGACAAAGATTGTG
AGTGGAGGAAGTTGTAGGAAATCGTATGTGATTAAAGATAAATGTTGTCA
CTGCAGAACGAATCGGTGCTCGAAAGGATGATATGTTCAAGACGAAGAGA
TGGCGGCCATTGAAAGTAACGTTGGCcaatgaagaagacaagaaaagAAT
TATGGCCTCAGTCCATAAACTAAACGAAGATAATTTCAGTGTA
Run BLAST on NCBI

transcript from alignment at sc0003082:10665..11107

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041906 ID=TCONS_00041906|Name=TCONS_00041906|organism=Clytia hemisphaerica|type=transcript|length=443bp|location=Sequence derived from alignment at sc0003082:10665..11107 (Clytia hemisphaerica)
TACACTGAAATTATCTTCGTTTAGTTTATGGACTGAGGCCATAATTcttt
tcttgtcttcttcattgGCCAACGTTACTTTCAATGGCCGCCATCTCTTC
GTCTTGAACATATCATCCTTTCGAGCACCGATTCGTTCTGCAGTGACAAC
ATTTATCTTTAATCACATACGATTTCCTACAACTTCCTCCACTCACAATC
TTTGTCACCGGCCTGCTGTTCCTCTTTGTTCTCATCTTTATTTTCACCTA
AATGATGGACAATGATGTTACATCTAGTTAAGTTTTTCCAGCGATCTTCT
TCTCTTTGGCGGTACAGGATCCataattttcagcattttcagtggatttt
tcatcgattgttgccattctttttcattcattcgCAAGAGCGTGGCCGTT
CATattgtatttgacgtcaaaggcaaaaaagtgaatattgcaC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025801XLOC_025801Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041906-exon-sc0003082-1491911889:10665..11107TCONS_00041906-exon-sc0003082-1491911889:10665..11107Clytia hemisphaericaexon
TCONS_00041906-exon-sc0003082-1510915933:10665..11107TCONS_00041906-exon-sc0003082-1510915933:10665..11107Clytia hemisphaericaexon
TCONS_00041906-exon-sc0003082-1575043694:10665..11107TCONS_00041906-exon-sc0003082-1575043694:10665..11107Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003082supercontigsc0003082:10665..11107 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.90402	0.556037	1.45977	0.969338	0.211784	0.197086	0.254925	0.614789	0.398346	1.1548	1.18484	0.865038	0.759424	0.275557	0.169461	0.194649	0	0	0	0.689948	0.335744	0.3565	0.746287	0.212956	0.325563	0.82354	1.27922	0	0	0.733508
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041906 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top