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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041892 ID=TCONS_00041892|Name=TCONS_00041892|organism=Clytia hemisphaerica|type=transcript|length=1136bp
CCTCTGTGAGTACTGGAAACAAGTAAAAGTCACTCTACTGTTTATATATC
ATAATATATTATATACCTTGAGAGTCAATATTTGGTCCTCTGTCCGGTCC
TCCTTATAATGTCATCAAGTCTTTTCGGCATCGAATCGATAGTGCGTTTG
ATCAGATCTTTGGAAACGTTTAGCAGCGTTCTCTGGCAACGGGCGGAAAA
GTCATCAAAGTTCTCAAAGGTAATGCGTTTCACGATGGCCTCCTCGCGCA
TTTGCTCTTTGACCGAATGAAAAGTGTTCTCAATGGGGTTTAAGTCAGGG
CTTCGGGCGGGTATTTTGaaaacttcacagttaatgtcACTGATAGCTTG
TTTGGCCTTCTTTCAATTTTGGACTGGACAACCGTCCATCAGGAACTTTC
GGCTTTCGGGCGTCACCAACTGGGGGAAGGCTTCTTTTAAAAAGGCAGAA
AATCTGCCTCCGTTCAAACGATCACGATACTGTTCCGCCAGGACCATTCC
TCCGGCATGGGAAATGGCGCAAAAAAAGTGGGCGGCTCGTCCCCCGCTGC
CTTCATGGTTACCCTTGGCAGTACGTTCAAAGTCTAGTCCATCATTTGGT
CGCCTCCAGGCCATAGTGCGAGGGGCCTTAAGTTGATCAAAAGGGTTGTA
TTTGTGAGTAAAGCCGActgcatcaaaataaaaacaaatctcGTGTCTCC
AAAGATTTTCCAGCTGTTTGGCGGTCATGGTTCTCTTTAAGCGTTTTGCA
AACTGTAAGCGTTGTTTAAGATCAATGCGTTTCAATACACCTTTCTTTCT
GGAATGAGTATAGCGTAGTCCTGCTTTACGAAAAACTTTACGTACTGTCT
CGTCAGAGACATGCTCAACCCCAGCGGCAAGTTTAACTCGTTTTATTGTG
AAGTGTCCGTACTCACTGCGCAGCTGTTCAGCAACGGGTAAAATTCTTCT
CTCGCCACGTTCCTGGAAGGCCCGAGGTCTACCCCTGTTAGTGTGACGTC
TGTCAGTCGGTGTCACGTTGATGATTGGCAACTTCATGTGCCGACATACT
GTAGCTTTCGAATAGCCTGAATACTTTCTCAATCCAAGGATTTTACGACT
ACTCCATCCCAAGTCTTGGTGGAGGTAACGCCAGTG Run BLAST on NCBI protein sequence of TCONS_00041892-protein >TCONS_00041892-protein ID=TCONS_00041892-protein|Name=TCONS_00041892-protein|organism=Clytia hemisphaerica|type=polypeptide|length=257bp
HWRYLHQDLGWSSRKILGLRKYSGYSKATVCRHMKLPIINVTPTDRRHTN
RGRPRAFQERGERRILPVAEQLRSEYGHFTIKRVKLAAGVEHVSDETVRK
VFRKAGLRYTHSRKKGVLKRIDLKQRLQFAKRLKRTMTAKQLENLWRHEI
CFYFDAVGFTHKYNPFDQLKAPRTMAWRRPNDGLDFERTAKGNHEGSGGR
AAHFFCAISHAGGMVLAEQYRDRLNGGRFSAFLKEAFPQLVTPESRKFLM
DGCPVQN Run BLAST on NCBI transcript from alignment at sc0003071:3939..5074 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041892 ID=TCONS_00041892|Name=TCONS_00041892|organism=Clytia hemisphaerica|type=transcript|length=1136bp|location=Sequence derived from alignment at sc0003071:3939..5074 (Clytia hemisphaerica)
CACTGGCGTTACCTCCACCAAGACTTGGGATGGAGTAGTCGTAAAATCCT
TGGATTGAGAAAGTATTCAGGCTATTCGAAAGCTACAGTATGTCGGCACA
TGAAGTTGCCAATCATCAACGTGACACCGACTGACAGACGTCACACTAAC
AGGGGTAGACCTCGGGCCTTCCAGGAACGTGGCGAGAGAAGAATTTTACC
CGTTGCTGAACAGCTGCGCAGTGAGTACGGACACTTCACAATAAAACGAG
TTAAACTTGCCGCTGGGGTTGAGCATGTCTCTGACGAGACAGTACGTAAA
GTTTTTCGTAAAGCAGGACTACGCTATACTCATTCCAGAAAGAAAGGTGT
ATTGAAACGCATTGATCTTAAACAACGCTTACAGTTTGCAAAACGCTTAA
AGAGAACCATGACCGCCAAACAGCTGGAAAATCTTTGGAGACACgagatt
tgtttttattttgatgcagTCGGCTTTACTCACAAATACAACCCTTTTGA
TCAACTTAAGGCCCCTCGCACTATGGCCTGGAGGCGACCAAATGATGGAC
TAGACTTTGAACGTACTGCCAAGGGTAACCATGAAGGCAGCGGGGGACGA
GCCGCCCACTTTTTTTGCGCCATTTCCCATGCCGGAGGAATGGTCCTGGC
GGAACAGTATCGTGATCGTTTGAACGGAGGCAGATTTTCTGCCTTTTTAA
AAGAAGCCTTCCCCCAGTTGGTGACGCCCGAAAGCCGAAAGTTCCTGATG
GACGGTTGTCCAGTCCAAAATTGAAAGAAGGCCAAACAAGCTATCAGTga
cattaactgtgaagttttCAAAATACCCGCCCGAAGCCCTGACTTAAACC
CCATTGAGAACACTTTTCATTCGGTCAAAGAGCAAATGCGCGAGGAGGCC
ATCGTGAAACGCATTACCTTTGAGAACTTTGATGACTTTTCCGCCCGTTG
CCAGAGAACGCTGCTAAACGTTTCCAAAGATCTGATCAAACGCACTATCG
ATTCGATGCCGAAAAGACTTGATGACATTATAAGGAGGACCGGACAGAGG
ACCAAATATTGACTCTCAAGGTATATAATATATTATGATATATAAACAGT
AGAGTGACTTTTACTTGTTTCCAGTACTCACAGAGG Coding sequence (CDS) from alignment at sc0003071:3939..5074 >TCONS_00041892 ID=TCONS_00041892|Name=TCONS_00041892|organism=Clytia hemisphaerica|type=CDS|length=774bp|location=Sequence derived from alignment at sc0003071:3939..5074 (Clytia hemisphaerica)
CACTGGCGTTACCTCCACCAAGACTTGGGATGGAGTAGTCGTAAAATCCT
TGGATTGAGAAAGTATTCAGGCTATTCGAAAGCTACAGTATGTCGGCACA
TGAAGTTGCCAATCATCAACGTGACACCGACTGACAGACGTCACACTAAC
AGGGGTAGACCTCGGGCCTTCCAGGAACGTGGCGAGAGAAGAATTTTACC
CGTTGCTGAACAGCTGCGCAGTGAGTACGGACACTTCACAATAAAACGAG
TTAAACTTGCCGCTGGGGTTGAGCATGTCTCTGACGAGACAGTACGTAAA
GTTTTTCGTAAAGCAGGACTACGCTATACTCATTCCAGAAAGAAAGGTGT
ATTGAAACGCATTGATCTTAAACAACGCTTACAGTTTGCAAAACGCTTAA
AGAGAACCATGACCGCCAAACAGCTGGAAAATCTTTGGAGACACgagatt
tgtttttattttgatgcagTCGGCTTTACTCACAAATACAACCCTTTTGA
TCAACTTAAGGCCCCTCGCACTATGGCCTGGAGGCGACCAAATGATGGAC
TAGACTTTGAACGTACTGCCAAGGGTAACCATGAAGGCAGCGGGGGACGA
GCCGCCCACTTTTTTTGCGCCATTTCCCATGCCGGAGGAATGGTCCTGGC
GGAACAGTATCGTGATCGTTTGAACGGAGGCAGATTTTCTGCCTTTTTAA
AAGAAGCCTTCCCCCAGTTGGTGACGCCCGAAAGCCGAAAGTTCCTGATG
GACGGTTGTCCAGTCCAAAATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041892-exon-sc0003071-1491911889:3939..5074 | TCONS_00041892-exon-sc0003071-1491911889:3939..5074 | Clytia hemisphaerica | exon |
| TCONS_00041892-exon-sc0003071-1510915933:3939..5074 | TCONS_00041892-exon-sc0003071-1510915933:3939..5074 | Clytia hemisphaerica | exon |
| TCONS_00041892-exon-sc0003071-1575043694:3939..5074 | TCONS_00041892-exon-sc0003071-1575043694:3939..5074 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003071 | supercontig | sc0003071:3939..5074 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR002492 | Transposase_Tc1-like |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0015074 | DNA integration |
| GO:0006313 | transposition, DNA-mediated |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003677 | DNA binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0015074 |
DNA integration |
| biological_process |
GO:0006313 |
transposition, DNA-mediated |
| molecular_function |
GO:0003677 |
DNA binding |
Blast
The following BLAST results are available for this feature:
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