TCONS_00041871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041871
Unique NameTCONS_00041871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length338

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041871 ID=TCONS_00041871|Name=TCONS_00041871|organism=Clytia hemisphaerica|type=transcript|length=338bp
ACTCTTTACCACCCGTCAAACTTCACTGCTCAATGTTGGCAGAAGACGCG
ATCAAAGCGGCGCTGAAAGATTAtcattccaaacaacaaaagaaagctGC
ATCAGCATAATTTCCAATACAAGCCATTCTTTCGTTTATTTATCCATTTA
CTGCAACAACCCTTTtgtattttaaaatgaaatttagtTTTTGTATATAC
GTAACGAAGCGTGGAGGTCTTTTATGTAACATTGTAAAACTTATCTTGTT
TTCAGGTTTCATTCTTTTTGAACTGAAGATGGTATTATAAAGAAATGACT
CTAAATGAACGATTTCTCCTTCCATTTTCTATTCCTAT
Run BLAST on NCBI

transcript from alignment at sc0003056:6996..7479+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041871 ID=TCONS_00041871|Name=TCONS_00041871|organism=Clytia hemisphaerica|type=transcript|length=484bp|location=Sequence derived from alignment at sc0003056:6996..7479+ (Clytia hemisphaerica)
ACTCTTTACCACCCGTCAAACTTCACTGCTCAAGTAAGAACTCTTCTGCA
ATTCTGTTCAATTGACAGAATGTGTTTTACACGATGtgtgttggaaagat
aattttgcgTGGCTGaataaaatactttcaaaaattaatgaaaacgTATT
GTACTGTTTTCTCTTCTTCATCTTTTCAGTGTTGGCAGAAGACGCGATCA
AAGCGGCGCTGAAAGATTAtcattccaaacaacaaaagaaagctGCATCA
GCATAATTTCCAATACAAGCCATTCTTTCGTTTATTTATCCATTTACTGC
AACAACCCTTTtgtattttaaaatgaaatttagtTTTTGTATATACGTAA
CGAAGCGTGGAGGTCTTTTATGTAACATTGTAAAACTTATCTTGTTTTCA
GGTTTCATTCTTTTTGAACTGAAGATGGTATTATAAAGAAATGACTCTAA
ATGAACGATTTCTCCTTCCATTTTCTATTCCTAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025769XLOC_025769Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041871-exon-sc0003056-1491911889:6996..7028TCONS_00041871-exon-sc0003056-1491911889:6996..7028Clytia hemisphaericaexon
TCONS_00041871-exon-sc0003056-1510915933:6996..7028TCONS_00041871-exon-sc0003056-1510915933:6996..7028Clytia hemisphaericaexon
TCONS_00041871-exon-sc0003056-1575043694:6996..7028TCONS_00041871-exon-sc0003056-1575043694:6996..7028Clytia hemisphaericaexon
TCONS_00041871-exon-sc0003056-1491911889:7175..7479TCONS_00041871-exon-sc0003056-1491911889:7175..7479Clytia hemisphaericaexon
TCONS_00041871-exon-sc0003056-1510915933:7175..7479TCONS_00041871-exon-sc0003056-1510915933:7175..7479Clytia hemisphaericaexon
TCONS_00041871-exon-sc0003056-1575043694:7175..7479TCONS_00041871-exon-sc0003056-1575043694:7175..7479Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003056supercontigsc0003056:6996..7479 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
125.311	112.029	208.913	216.487	0	0	0	0	60.6883	56.0084	46.3894	59.5272	59.3557	55.5115	41.3684	38.2923	55.7404	90.8012	34.9838	33.0658	159.776	150.623	69.9254	80.2758	0.525966	0.630551	82.6643	70.5557	46.5169	41.4318
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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