|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041866 ID=TCONS_00041866|Name=TCONS_00041866|organism=Clytia hemisphaerica|type=transcript|length=1892bp
AAAACGCTGTACCATGTTGACCTAGGATGACTaagttggcttatatgtga
cacagtcaacttggTATGTATAAAAACGCTGTACCATGTTGACCTGGGGT
ATGACTaagttggcttatatgtgacacagtcaacttggGATGTATAAAAA
CGCTGTACCATGTTGACCTGGGATGACTAAGTTgatgtgacacagtcaac
ttggTATGTATGAAAACGCTGTACCATGTTGACCTGGGATGACTaagttg
gcttatatgtgacacagtcaacttggGATGTATAAAAACGCTGTACCATG
TTGACCTGGGATGGCTaagttggcttatatgtgacacagtcaacttggTA
TGTATGAAAACGCTGTACCATGTTGACCTGGGATGACTaagttggcttat
atgtgacacAGTCAGCTTGGTATAGGTTGTAAATAACATTGTACTTTGTT
GACCGGAGGCCCTTACGTGACTAGTTGGCTCTTAAGTGACACAGTCAATT
TGGTATGGGTTTTTAACTAAAATTGAGCTGGAACAGATAGTGTACGTTTA
AATACTTTATGCTTATGCCAGAAAAACGTCTATCTTTGTGCAAGGATATA
CACATAtatatttcttcttcttccttcaGTCCACACCACACACGTGGTAA
TCGTTAGTCAGTTCGTTCATCCCAGTCACCAGTGCAGTGCAGTCCAGCGA
AGTGTGTCTGTGAATTCGAGTTCGTCCCACTATCCACTAAAAAGTCTCTG
CCGTACCAAGTtgaccgaaaattttttttatcgaaAACAGTCAACTTGGT
ACGGCAAAACGCACGGGATGGAACACTAATTTTAATGTTTCTGATTTTTG
TGACCcttagagactttgaaaggtgaaaaaataaacgacccttaccgtcc
gcacatacccagcacccatttttgcctaagtagtACCCACCCCGGGGGAA
TAGAATATCCGAATATCTATTTATTCTCCAGAGAATGATAATCATCATTT
CAATAATTTTAAGCCCCAGTTTAGATAATGAGTTTTGTACCCTTTTTTTG
GGGACACACCGTATTATACTTTTTATGACAATTAACTTGTTTTcgaaaaa
caaaagttaaaccCATCTTCCTGTCAAGGATAAATTGGATAAATTTTACG
GGGTTTTCCGCAGAACAGCCGCTTAATTCTATTATACATTTGCCTTAGTC
CTTTAGAGCAGAGAGTGATAAAAGTAGCCTTGATAATTTGTTATGATCCC
TGAGAGAGGGTCCTcaaggtaagtgacctaccccGTAGGTTTGGCCCATT
TAGTGAAGTTTTTTTTCAGGtttcccaaaatgcactgtaagggtcgataG
GATGGACGGGtgtatagactggagtcgtttataatgcatgtaatactaat
aataaacacaaataatgatacgggatttagtttaaGTGGTGCAATACGGG
ATTTTGCTCCAATCTAATCTCAGGCAACGTTCCCTCGAAAAAGAGGGAAG
ATAAAATGAATGGACAcggcttattttttcttctattctcATCGCGAAAT
TAGAGTTTCTCGGAGTTATGGATGagaaaaatatgtaaatatTAACCAAa
gtaaatattaaataaaaaccATTCACCAGTATACGTATGTAGTCTAGATG
CTACCAAAGCTTTTGACAGCTGCAACTGGCTTAAACTTTTCGAAAAACTT
GATGACAAAGGAGCAGTTCCAAAATCAGTTCTTAAGTTCTTAATAGACTC
TTATCTTAAGAGCACTTCATCCGTCGTCTACGGTGACAACAAATCCAATC
CATTCCACATGACCCAGGGAGTGAAACAAGGATCAATACTGTCACCCTAC
CTTTACAGTGTCTACACCAAAGACCTTATTGATGAACTTCTN Run BLAST on NCBI protein sequence of TCONS_00041866-protein >TCONS_00041866-protein ID=TCONS_00041866-protein|Name=TCONS_00041866-protein|organism=Clytia hemisphaerica|type=polypeptide|length=127bp
MLFTTYTKLTVSHISQLSHPRSTWYSVFIHTKLTVSHISQLSHPRSTWYS
VFIHPKLTVSHISQLSHPRSTWYSVFIHTKLTVSHQLSHPRSTWYSVFIH
PKLTVSHISQLSHTPGQHGTAFLYIPS Run BLAST on NCBI transcript from alignment at sc0003055:3549..5440 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041866 ID=TCONS_00041866|Name=TCONS_00041866|organism=Clytia hemisphaerica|type=transcript|length=1892bp|location=Sequence derived from alignment at sc0003055:3549..5440 (Clytia hemisphaerica)
NAGAAGTTCATCAATAAGGTCTTTGGTGTAGACACTGTAAAGGTAGGGTG
ACAGTATTGATCCTTGTTTCACTCCCTGGGTCATGTGGAATGGATTGGAT
TTGTTGTCACCGTAGACGACGGATGAAGTGCTCTTAAGATAAGAGTCTAT
TAAGAACTTAAGAACTGATTTTGGAACTGCTCCTTTGTCATCAAGTTTTT
CGAAAAGTTTAAGCCAGTTGCAGCTGTCAAAAGCTTTGGTAGCATCTAGA
CTACATACGTATACTGGTGAATggtttttatttaatatttactTTGGTTA
atatttacatatttttctCATCCATAACTCCGAGAAACTCTAATTTCGCG
ATgagaatagaagaaaaaataagccgTGTCCATTCATTTTATCTTCCCTC
TTTTTCGAGGGAACGTTGCCTGAGATTAGATTGGAGCAAAATCCCGTATT
GCACCACttaaactaaatcccgtatcattatttgtgtttattattagtat
tacatgcattataaacgactccagtctatacaCCCGTCCATCCtatcgac
ccttacagtgcattttgggaaaCCTGAAAAAAAACTTCACTAAATGGGCC
AAACCTACggggtaggtcacttaccttgAGGACCCTCTCTCAGGGATCAT
AACAAATTATCAAGGCTACTTTTATCACTCTCTGCTCTAAAGGACTAAGG
CAAATGTATAATAGAATTAAGCGGCTGTTCTGCGGAAAACCCCGTAAAAT
TTATCCAATTTATCCTTGACAGGAAGATGggtttaacttttgtttttcgA
AAACAAGTTAATTGTCATAAAAAGTATAATACGGTGTGTCCCCAAAAAAA
GGGTACAAAACTCATTATCTAAACTGGGGCTTAAAATTATTGAAATGATG
ATTATCATTCTCTGGAGAATAAATAGATATTCGGATATTCTATTCCCCCG
GGGTGGGTactacttaggcaaaaatgggtgctgggtatgtgcggacggta
agggtcgtttattttttcacctttcaaagtctctaagGGTCACAAAAATC
AGAAACATTAAAATTAGTGTTCCATCCCGTGCGTTTTGCCGTACCAAGTT
GACTGTTttcgataaaaaaaattttcggtcaACTTGGTACGGCAGAGACT
TTTTAGTGGATAGTGGGACGAACTCGAATTCACAGACACACTTCGCTGGA
CTGCACTGCACTGGTGACTGGGATGAACGAACTGACTAACGATTACCACG
TGTGTGGTGTGGACtgaaggaagaagaagaaatataTATGTGTATATCCT
TGCACAAAGATAGACGTTTTTCTGGCATAAGCATAAAGTATTTAAACGTA
CACTATCTGTTCCAGCTCAATTTTAGTTAAAAACCCATACCAAATTGACT
GTGTCACTTAAGAGCCAACTAGTCACGTAAGGGCCTCCGGTCAACAAAGT
ACAATGTTATTTACAACCTATACCAAGCTGACTgtgtcacatataagcca
acttAGTCATCCCAGGTCAACATGGTACAGCGTTTTCATACATAccaagt
tgactgtgtcacatataagccaacttAGCCATCCCAGGTCAACATGGTAC
AGCGTTTTTATACATCccaagttgactgtgtcacatataagccaacttAG
TCATCCCAGGTCAACATGGTACAGCGTTTTCATACATAccaagttgactg
tgtcacatcAACTTAGTCATCCCAGGTCAACATGGTACAGCGTTTTTATA
CATCccaagttgactgtgtcacatataagccaacttAGTCATACCCCAGG
TCAACATGGTACAGCGTTTTTATACATAccaagttgactgtgtcacatat
aagccaacttAGTCATCCTAGGTCAACATGGTACAGCGTTTT Coding sequence (CDS) from alignment at sc0003055:3549..5440 >TCONS_00041866 ID=TCONS_00041866|Name=TCONS_00041866|organism=Clytia hemisphaerica|type=CDS|length=384bp|location=Sequence derived from alignment at sc0003055:3549..5440 (Clytia hemisphaerica)
ATGTTATTTACAACCTATACCAAGCTGACTgtgtcacatataagccaact
tAGTCATCCCAGGTCAACATGGTACAGCGTTTTCATACATAccaagttga
ctgtgtcacatataagccaacttAGCCATCCCAGGTCAACATGGTACAGC
GTTTTTATACATCccaagttgactgtgtcacatataagccaacttAGTCA
TCCCAGGTCAACATGGTACAGCGTTTTCATACATAccaagttgactgtgt
cacatcAACTTAGTCATCCCAGGTCAACATGGTACAGCGTTTTTATACAT
CccaagttgactgtgtcacatataagccaacttAGTCATACCCCAGGTCA
ACATGGTACAGCGTTTTTATACATAccaagttga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041866-exon-sc0003055-1491911889:3549..5440 | TCONS_00041866-exon-sc0003055-1491911889:3549..5440 | Clytia hemisphaerica | exon |
| TCONS_00041866-exon-sc0003055-1510915933:3549..5440 | TCONS_00041866-exon-sc0003055-1510915933:3549..5440 | Clytia hemisphaerica | exon |
| TCONS_00041866-exon-sc0003055-1575043694:3549..5440 | TCONS_00041866-exon-sc0003055-1575043694:3549..5440 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003055 | supercontig | sc0003055:3549..5440 . |
Blast
The following BLAST results are available for this feature:
|
