TCONS_00041859 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041859
Unique NameTCONS_00041859
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length463

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041859 ID=TCONS_00041859|Name=TCONS_00041859|organism=Clytia hemisphaerica|type=transcript|length=463bp
AGGAATTGGAGGTGATCCTTTCAACGGAACCAACTTTGTAGACTGTTTAG
ATGTCTTCTTGAAAGACCCTGAAACTAAAGCTATGATCATGATCGGCGAA
ATCGGAGGTGCTGCCGAAGAACGAGCCGCTGAATTCCTTAAACAAAATAA
tgttggtgaaaataagaaaccTATCGTTGGTTTCATCGCTGGTTTAACGG
CACCACCAGGCCGACGTATGGGCCACGCAGGTGCCATTATTTCCGGTGGT
AAAGGTGGAGCCGAAGATAAAATTAAAGCTTTAGAAGATGCAGGTGTTGT
AGTTACCAGATCTCCTGCTCAACTTGGTTCTACACTTAGACGGGTCTTTG
ACGACTTCTATTTGGACTAAATTACTTTTGTTTGTAGTCTAGTTTTGTag
atattttaataaaaaaattgttttaattttgataaaaatgactGTGAAAG
AGGTATCTCAAAA
Run BLAST on NCBI

protein sequence of TCONS_00041859-protein

>TCONS_00041859-protein ID=TCONS_00041859-protein|Name=TCONS_00041859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
GIGGDPFNGTNFVDCLDVFLKDPETKAMIMIGEIGGAAEERAAEFLKQNN
VGENKKPIVGFIAGLTAPPGRRMGHAGAIISGGKGGAEDKIKALEDAGVV
VTRSPAQLGSTLRRVFDDFYLD
Run BLAST on NCBI

transcript from alignment at sc0003050:12462..13817-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041859 ID=TCONS_00041859|Name=TCONS_00041859|organism=Clytia hemisphaerica|type=transcript|length=1356bp|location=Sequence derived from alignment at sc0003050:12462..13817- (Clytia hemisphaerica)
AGGAATTGGAGGTGATCCTTTCAACGGAACCAACTTTGTAGACTGTTTAG
ATGTCTTCTTGAAAGACCCTGAAACTAAAGGTATACTTTCTTGTATTGAC
CAACCCTGAGATTTTCTCACGAGAGTTTTTTCGCTTAATTCATTCAAATA
TTTCATAAAGATGAGTAGATTTTCGGACTGTCTCTCTTATCAGGTCTCCT
TTTTCTTAGAAAAACTGTCCCTAAATCATTTCTCTTTGTCAACGATATTC
ATTCAATGATTCACTGATCATAAATGACCAAATAAAGTCTTGTTTTAGTC
CTACACTTCAAATGATGACAATTTTTTAAAACGTCACTTTAATTTTGGAT
AGAGATGTTGAAATCTGATTGTTATGGAGTTAGAAATGTCTTTATAGTTT
TTATACTCAAGAGTATCATGTCTCCTCAATACAATATTGAGCAAATTGGT
GATCTAACGAGTGCAGCAGGACCGATGTTTCGTTTGCTAACTTTTTTTGA
ATTTGGAAATATTTATATCCGTCTTCTACACTTTAAGCTATGATCATGAT
CGGCGAAATCGGAGGTGCTGCCGAAGAACGAGCCGCTGAATTCCTTAAAC
AAAATAATGTTGGTGAAAATAAGAAACCTATCGTTGGTTTCATCGCTGGT
TTAACGGCACCACCAGGCCGACGTATGGGCCACGCAGGTGCCATTATTTC
CGGTGGTAAAGGTGGAGCCGAAGATAAAGTAAGGGATTCATTCTTCCAAT
ACCAATCCCTCTTCCACAGCAATGGGCTCCACCCCCCTTCAATCTTTTAC
CCCGAACCTATCTAATATTATAAGATAATGCTTGTTAGAAGGAAAACTTA
GGTGTGCAAGTTTTATTCTGCAATGAGTAGAAATATTACGTTCAATTTAC
CGCAACGTAAATACTTCAATCAACAACGTTTCTTGTGCCAATTCGCTATC
GAATACCAGCTTGTTTTGTCACCTCTTCGGTGTCATAGATACAGAAGAAT
AGAAAACAATATAATTGAATCTTAGAAAGACGATTTTAACCTTTTTTGTT
CTTTCTTTCAGATTAAAGCTTTAGAAGATGCAGGTGTTGTAGTTACCAGA
TCTCCTGCTCAACTTGGTTCTACACTTAGACGGGTATGTGGTATTCATTC
TTTCTTATAAACTAACATAAAGACTTTTTACAAGGTTGTCTCCCTTCATC
TATAAAGAATTTAATACCTTTTCCTTTCTTTTTCAGGTCTTTGACGACTT
CTATTTGGACTAAATTACTTTTGTTTGTAGTCTAGTTTTGTAGATATTTT
AATAAAAAAATTGTTTTAATTTTGATAAAAATGACTGTGAAAGAGGTATC
TCAAAA

Coding sequence (CDS) from alignment at sc0003050:12462..13817-

>TCONS_00041859 ID=TCONS_00041859|Name=TCONS_00041859|organism=Clytia hemisphaerica|type=CDS|length=1476bp|location=Sequence derived from alignment at sc0003050:12462..13817- (Clytia hemisphaerica)
GTCTTTGACGACTTCTATTTGGACTAAATTAAAGCTTTAGAAGATGCAGG
TGTTGTAGTTACCAGATCTCCTGCTCAACTTGGTTCTACACTTAGACGGC
TATGATCATGATCGGCGAAATCGGAGGTGCTGCCGAAGAACGAGCCGCTG
AATTCCTTAAACAAAATAATGTTGGTGAAAATAAGAAACCTATCGTTGGT
TTCATCGCTGGTTTAACGGCACCACCAGGCCGACGTATGGGCCACGCAGG
TGCCATTATTTCCGGTGGTAAAGGTGGAGCCGAAGATAAAGGAATTGGAG
GTGATCCTTTCAACGGAACCAACTTTGTAGACTGTTTAGATGTCTTCTTG
AAAGACCCTGAAACTAAAGGTCTTTGACGACTTCTATTTGGACTAAATTA
AAGCTTTAGAAGATGCAGGTGTTGTAGTTACCAGATCTCCTGCTCAACTT
GGTTCTACACTTAGACGGCTATGATCATGATCGGCGAAATCGGAGGTGCT
GCCGAAGAACGAGCCGCTGAATTCCTTAAACAAAATAATGTTGGTGAAAA
TAAGAAACCTATCGTTGGTTTCATCGCTGGTTTAACGGCACCACCAGGCC
GACGTATGGGCCACGCAGGTGCCATTATTTCCGGTGGTAAAGGTGGAGCC
GAAGATAAAGGAATTGGAGGTGATCCTTTCAACGGAACCAACTTTGTAGA
CTGTTTAGATGTCTTCTTGAAAGACCCTGAAACTAAAGGTCTTTGACGAC
TTCTATTTGGACTAAATTAAAGCTTTAGAAGATGCAGGTGTTGTAGTTAC
CAGATCTCCTGCTCAACTTGGTTCTACACTTAGACGGCTATGATCATGAT
CGGCGAAATCGGAGGTGCTGCCGAAGAACGAGCCGCTGAATTCCTTAAAC
AAAATAATGTTGGTGAAAATAAGAAACCTATCGTTGGTTTCATCGCTGGT
TTAACGGCACCACCAGGCCGACGTATGGGCCACGCAGGTGCCATTATTTC
CGGTGGTAAAGGTGGAGCCGAAGATAAAGGAATTGGAGGTGATCCTTTCA
ACGGAACCAACTTTGTAGACTGTTTAGATGTCTTCTTGAAAGACCCTGAA
ACTAAAGGTCTTTGACGACTTCTATTTGGACTAAATTAAAGCTTTAGAAG
ATGCAGGTGTTGTAGTTACCAGATCTCCTGCTCAACTTGGTTCTACACTT
AGACGGCTATGATCATGATCGGCGAAATCGGAGGTGCTGCCGAAGAACGA
GCCGCTGAATTCCTTAAACAAAATAATGTTGGTGAAAATAAGAAACCTAT
CGTTGGTTTCATCGCTGGTTTAACGGCACCACCAGGCCGACGTATGGGCC
ACGCAGGTGCCATTATTTCCGGTGGTAAAGGTGGAGCCGAAGATAAAGGA
ATTGGAGGTGATCCTTTCAACGGAACCAACTTTGTAGACTGTTTAGATGT
CTTCTTGAAAGACCCTGAAACTAAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025759XLOC_025759Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041859-exon-sc0003050-1575043694:13738..13817TCONS_00041859-exon-sc0003050-1575043694:13738..13817Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1575043694:13090..13280TCONS_00041859-exon-sc0003050-1575043694:13090..13280Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1575043694:12685..12756TCONS_00041859-exon-sc0003050-1575043694:12685..12756Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1575043694:12462..12581TCONS_00041859-exon-sc0003050-1575043694:12462..12581Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1510915933:13738..13817TCONS_00041859-exon-sc0003050-1510915933:13738..13817Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1510915933:13090..13280TCONS_00041859-exon-sc0003050-1510915933:13090..13280Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1510915933:12685..12756TCONS_00041859-exon-sc0003050-1510915933:12685..12756Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1510915933:12462..12581TCONS_00041859-exon-sc0003050-1510915933:12462..12581Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1491911889:13738..13817TCONS_00041859-exon-sc0003050-1491911889:13738..13817Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1491911889:13090..13280TCONS_00041859-exon-sc0003050-1491911889:13090..13280Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1491911889:12685..12756TCONS_00041859-exon-sc0003050-1491911889:12685..12756Clytia hemisphaericaexon
TCONS_00041859-exon-sc0003050-1491911889:12462..12581TCONS_00041859-exon-sc0003050-1491911889:12462..12581Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041859-proteinTCONS_00041859-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003050supercontigsc0003050:12462..13817 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
184.01	180.557	271.948	282.835	70.7172	50.0206	67.4214	63.3431	147.454	134.836	148.772	178.37	153.137	185.567	164.039	157.208	234.271	230.354	105.845	111.64	235.061	226.711	152.822	151.181	82.0931	103.057	182.749	195.207	93.1026	98.5861
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR016102Succinyl-CoA_synth-like
IPR005811CoA_ligase
IPR017440Cit_synth/succinyl-CoA_lig_AS
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
Blast
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BLAST of TCONS_00041859 vs. Swiss-Prot (Human)
Match: SUCA (Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 124.02 bits (310), Expect = 5.795e-34
Identity = 84/117 (71.79%), Postives = 102/117 (87.18%), Query Frame = 2 
Query:    2 GIGGDPFNGTNFVDCLDVFLKDPETKXXXXXXXXXXXXXXRAAEFLKQNNVGENKKPIVGFIAGLTAPPGRRMXXXXXXXXXXXXXXEDKIKALEDAGVVVTRSPAQLGSTLRRVFD 352
            GIGGDPFNGT+F+DCL++FL D  T+ +I+IGEIGG AEE AAEFLKQ+N G N KP+V FIAGLTAPPGRRMGHAGAII+GGKGGA++KI AL+ AGVVV+ SPAQLG+T+ + F+
Sbjct:  225 GIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFE 341
The following BLAST results are available for this feature:
BLAST of TCONS_00041859 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUCA5.795e-3471.79Succinate--CoA ligase [ADP/GDP-forming] subunit al... [more]
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