TCONS_00041859-protein (polypeptide) - C. hemisphaerica

Overview
NameTCONS_00041859-protein
Unique NameTCONS_00041859-protein
Typepolypeptide
OrganismClytia hemisphaerica (Jellyfish)
Sequence length122

Sequence
The following sequences are available for this feature:

polypeptide sequence

>TCONS_00041859-protein ID=TCONS_00041859-protein|Name=TCONS_00041859-protein|organism=Clytia hemisphaerica|type=polypeptide|length=122bp
GIGGDPFNGTNFVDCLDVFLKDPETKAMIMIGEIGGAAEERAAEFLKQNN
VGENKKPIVGFIAGLTAPPGRRMGHAGAIISGGKGGAEDKIKALEDAGVV
VTRSPAQLGSTLRRVFDDFYLD
Run BLAST on NCBI
Gene-mRNA-Prot
This polypeptide comes from the following gene feature:
Feature NameUnique NameSpeciesType
XLOC_025759XLOC_025759Clytia hemisphaericagene
This polypeptide derives from the following transcript feature(s):
Feature NameUnique NameSpeciesType
TCONS_00041859TCONS_00041859Clytia hemisphaericatranscript
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR016102Succinyl-CoA_synth-like
IPR005811CoA_ligase
IPR017440Cit_synth/succinyl-CoA_lig_AS
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO Annotation
GO Assignments
This polypeptide is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008152 metabolic process
molecular_function GO:0003824 catalytic activity
InterPro
Analysis Name: InterPro Annotations of C. hemisphaerica v1.0
Date Performed: 2017-06-01
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01798SCOASYNTHASEcoord: 68..85
score: 82.43
coord: 1..19
score: 64.55
coord: 32..45
score: 75.42
IPR016102Succinyl-CoA synthetase-likeGENE3D3.40.50.261coord: 1..119
e-value: 1.5E-32
score: 112.0
IPR016102Succinyl-CoA synthetase-likeSUPERFAMILY52210Succinyl-CoA synthetase domainscoord: 1..115
IPR005811ATP-citrate lyase/succinyl-CoA ligasePFAMPF00549Ligase_CoAcoord: 1..100
e-value: 4.9E-17
score: 62.1
IPR017440ATP-citrate lyase/succinyl-CoA ligase, active sitePROSITEPS00399SUCCINYL_COA_LIG_2coord: 64..77

Blast
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BLAST of TCONS_00041859-protein vs. Swiss-Prot (Human)
Match: SUCA (Succinate--CoA ligase [ADP/GDP-forming] subunit alpha, mitochondrial OS=Homo sapiens GN=SUCLG1 PE=1 SV=4)

HSP 1 Score: 135.961 bits (341), Expect = 4.303e-40
Identity = 84/118 (71.19%), Postives = 102/118 (86.44%), Query Frame = 0 
Query:    1 GIGGDPFNGTNFVDCLDVFLKDPETKAMIMIGEIGGAAEERAAEFLKQNNVGENKKPIVGFIAGLTAPPGRRMGHAGAIISGGKGGAEDKIKALEDAGVVVTRSPAQLGSTLRRVFDD 118
            GIGGDPFNGT+F+DCL++FL D  T+ +I+IGEIGG AEE AAEFLKQ+N G N KP+V FIAGLTAPPGRRMGHAGAII+GGKGGA++KI AL+ AGVVV+ SPAQLG+T+ + F+ 
Sbjct:  225 GIGGDPFNGTDFIDCLEIFLNDSATEGIILIGEIGGNAEENAAEFLKQHNSGPNSKPVVSFIAGLTAPPGRRMGHAGAIIAGGKGGAKEKISALQSAGVVVSMSPAQLGTTIYKEFEK 342
The following BLAST results are available for this feature:
BLAST of TCONS_00041859-protein vs. Swiss-Prot (Human)
Analysis Date: 2018-01-31 (Blastp Clytia hemisphaerica v1.0 proteins vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SUCA4.303e-4071.19Succinate--CoA ligase [ADP/GDP-forming] subunit al... [more]
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