TCONS_00041856 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041856
Unique NameTCONS_00041856
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041856 ID=TCONS_00041856|Name=TCONS_00041856|organism=Clytia hemisphaerica|type=transcript|length=418bp
GTTAAAAAAGCATATACACTATCGATAGTGGCAAACTTACACATTCATTG
GTTGAAAAGGCAAATCGCTATCGATAGTGTTGTTAATCcttttattgctt
ttttattGATCATTGTGAGGGAAATTCTTTCTTCTCATTGGTTAAAAAAG
CATTGCACTATCGATAGTGGCAAATTTGCTAACGATAGCGTTGCCGCTAT
TGATAGCGTTTTCNNNNNNNNNNTATTAATCATTGTGAGGGAAATTCTTT
CTTCTCATTGGTTAAAAAAGCATTGCACTATCGATAGTGGCAAATTTGCT
AACGATAGCGTTGCCGCTATTGATAGCGTTTTCCCTCTTTTTTAATTCTG
TACTTTGATTGGTTGAGACAGaattcgCTAAGGTTAGCGTTTTTTTTGCT
ATAATCCACTATTGAAGT
Run BLAST on NCBI

protein sequence of TCONS_00041856-protein

>TCONS_00041856-protein ID=TCONS_00041856-protein|Name=TCONS_00041856-protein|organism=Clytia hemisphaerica|type=polypeptide|length=114bp
VKKAYTLSIVANLHIHWLKRQIAIDSVVNPFIAFLLIIVREILSSHWLKK
HCTIDSGKFANDSVAAIDSVFXXXXLIIVREILSSHWLKKHCTIDSGKFA
NDSVAAIDSVFPLF
Run BLAST on NCBI

transcript from alignment at sc0003049:419..836

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041856 ID=TCONS_00041856|Name=TCONS_00041856|organism=Clytia hemisphaerica|type=transcript|length=418bp|location=Sequence derived from alignment at sc0003049:419..836 (Clytia hemisphaerica)
ACTTCAATAGTGGATTATAGCAAAAAAAACGCTAACCTTAGcgaattCTG
TCTCAACCAATCAAAGTACAGAATTAAAAAAGAGGGAAAACGCTATCAAT
AGCGGCAACGCTATCGTTAGCAAATTTGCCACTATCGATAGTGCAATGCT
TTTTTAACCAATGAGAAGAAAGAATTTCCCTCACAATGATTAATANNNNN
NNNNNGAAAACGCTATCAATAGCGGCAACGCTATCGTTAGCAAATTTGCC
ACTATCGATAGTGCAATGCTTTTTTAACCAATGAGAAGAAAGAATTTCCC
TCACAATGATCaataaaaaagcaataaaagGATTAACAACACTATCGATA
GCGATTTGCCTTTTCAACCAATGAATGTGTAAGTTTGCCACTATCGATAG
TGTATATGCTTTTTTAAC

Coding sequence (CDS) from alignment at sc0003049:419..836

>TCONS_00041856 ID=TCONS_00041856|Name=TCONS_00041856|organism=Clytia hemisphaerica|type=CDS|length=345bp|location=Sequence derived from alignment at sc0003049:419..836 (Clytia hemisphaerica)
TTAAAAAAGAGGGAAAACGCTATCAATAGCGGCAACGCTATCGTTAGCAA
ATTTGCCACTATCGATAGTGCAATGCTTTTTTAACCAATGAGAAGAAAGA
ATTTCCCTCACAATGATTAATANNNNNNNNNNGAAAACGCTATCAATAGC
GGCAACGCTATCGTTAGCAAATTTGCCACTATCGATAGTGCAATGCTTTT
TTAACCAATGAGAAGAAAGAATTTCCCTCACAATGATCaataaaaaagca
ataaaagGATTAACAACACTATCGATAGCGATTTGCCTTTTCAACCAATG
AATGTGTAAGTTTGCCACTATCGATAGTGTATATGCTTTTTTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025756XLOC_025756Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041856-exon-sc0003049-1491911889:419..836TCONS_00041856-exon-sc0003049-1491911889:419..836Clytia hemisphaericaexon
TCONS_00041856-exon-sc0003049-1510915933:419..836TCONS_00041856-exon-sc0003049-1510915933:419..836Clytia hemisphaericaexon
TCONS_00041856-exon-sc0003049-1575043694:419..836TCONS_00041856-exon-sc0003049-1575043694:419..836Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041856-proteinTCONS_00041856-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003049supercontigsc0003049:419..836 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.165533	0	0	0	0.180894	0.21824	0.204314	0.429135	0.177184	0.515938	0	0.112895	0.351729	0.0963896	0.103441	0	1.0449	0.180448	0.755303	0.656496	2.40162	0.194632	2.12338	0	0	0.698283	0.248409	0.565228	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041856 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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