TCONS_00041836 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041836
Unique NameTCONS_00041836
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length323

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041836 ID=TCONS_00041836|Name=TCONS_00041836|organism=Clytia hemisphaerica|type=transcript|length=323bp
TTTTGCCTTTAAGgaataaaaatactaaaaaagaataaaaaacaatataC
AATGCAGTGGTTTCAAGGCGATGTCTCTGAAGCCATTCAAAAGGCTATTA
GTGAGCAGAAGATGTTCATTGTCTTTGTTCGAGATGACAAAGAAGAATCA
CAGAAAATGGAAGAATTATGCAATTCAGATGAGgttaagaacatttgtaC
AGATGATCTTTGTGTAGCAATTAACATCACGGTGGATAGTGAAGCAGGTC
AACAATTTGGTACTATCTGTAtccttttcaaaagtaaaaattgACTCGTT
CAAGTCCCACAAGTAGACTTTAG
Run BLAST on NCBI

transcript from alignment at sc0003043:11851..13634+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041836 ID=TCONS_00041836|Name=TCONS_00041836|organism=Clytia hemisphaerica|type=transcript|length=1784bp|location=Sequence derived from alignment at sc0003043:11851..13634+ (Clytia hemisphaerica)
TTTTGCCTTTAAGgaataaaaatactaaaaaagaataaaaaacaatataC
AATGCAGTGGTTTCAAGGCGATGTCTCTGAAGCCATTCAAAAGGCTATTA
GTGAGCAGAAGATGTTCATTGTCTTTGTTCGAGGTACGTTTTTTTCTTGC
CGATTAAATTTTGTGGAATCCTTTTCTCGGTGTGGGGTTATCAAATTCTG
GTATTTTAATTTTGAGGTTTAAACAACCAAAACATAACCTTTAAAAGTAT
CAACTTTTATAGTTACATTGGATGAATCTGTTTTTCAATGCAATGCCCTG
TAAAGCAACTTTGTTTCTTGTGAAGAAGTAATCAACCAAACATTAACAAT
TTCTTTTCAGATGACAAAGAAGAATCACAGAAAATGGAAGAATTATGCAA
TTCAGATGAGGTTCTTTTTATTTCATACAAAAATTTGCTTCAAGCTTTTC
TCTCGTAAGAGACAAATGAACATGTGATGTGAATTTGTATTAAATTTCAG
TTTCAGGGTCTTAAAGTTGCTTTTAATAAAGACAGCAGATAACTATTTTA
TAAATCACTTGCATCTAAAACGTTTAAACCAATAGACCACAGGTCATTCA
GgccaataataataataataaaaaaaacaggaGGAACGACAGATTCAATC
CACGGCGTGCAATCTAATTCTTCATGGTGTTGACGAATCCACTGAAGATT
CAGAGGAGTCAACCAAAATCTACGNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAACT
ctatcttaagaaaattgtaaaccgaacaaagagcggttcatagaggccca
tgtgctcgcacggtggcctgcgaacttgtatagcattattattataataa
taCATATATTTCTAACTATCGTCACTTCGTACAATTGTTTTTAGTATTAA
AAGTTTGGTGATTCATTTCCCACtatttttggtttattttgtaggttaag
aacatttgtaCAGATGATCTTTGTGTAGCAATTAACATCACGGTGGATAG
TGAAGCAGGTCAACAATTTGGTACTATCTGTAtccttttcaaaagtaaaa
attgACTCGTTCAAGTCCCACAAGTAGACTTTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025742XLOC_025742Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041836-exon-sc0003043-1491911889:11851..11983TCONS_00041836-exon-sc0003043-1491911889:11851..11983Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1510915933:11851..11983TCONS_00041836-exon-sc0003043-1510915933:11851..11983Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1575043694:11851..11983TCONS_00041836-exon-sc0003043-1575043694:11851..11983Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1491911889:12211..12260TCONS_00041836-exon-sc0003043-1491911889:12211..12260Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1510915933:12211..12260TCONS_00041836-exon-sc0003043-1510915933:12211..12260Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1575043694:12211..12260TCONS_00041836-exon-sc0003043-1575043694:12211..12260Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1491911889:13495..13634TCONS_00041836-exon-sc0003043-1491911889:13495..13634Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1510915933:13495..13634TCONS_00041836-exon-sc0003043-1510915933:13495..13634Clytia hemisphaericaexon
TCONS_00041836-exon-sc0003043-1575043694:13495..13634TCONS_00041836-exon-sc0003043-1575043694:13495..13634Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003043supercontigsc0003043:11851..13634 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
19.4536	19.3791	3.94204	2.5418	2.49788	0	2.73426	0	10.7465	12.1465	4.73991	5.74705	8.18858	8.92998	15.2577	18.892	21.9882	24.0441	5.83015	12.6326	14.3978	9.41006	11.9328	14.0604	1.83633	0	6.5975	2.7455	11.0509	14.3037
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041836 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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