TCONS_00041815 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041815
Unique NameTCONS_00041815
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length369

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041815 ID=TCONS_00041815|Name=TCONS_00041815|organism=Clytia hemisphaerica|type=transcript|length=369bp
TTAGGCACAAACCTCAAAGATTAAGGCAGTTTATTTTTGTATAATGAATG
AAAGTGACATATAATGGTCATTTTGATCAttcatataaaaatgaagaGTT
CTTTTATTACCATACAGTGAAATCTATGTTTAAATATTCTCAACTAAAGG
CTTGTCGCTTGTCTTATTTAGCTGCttaattttgagatattttccaAGAA
TATAAGGGGCTTTGTGATAGGTCATACATGAATTAAAAAGATATGTTTTA
TTTGAATGAATTTATAAGATGCTAAAATTAGTAATTATAGTTAATAATTA
TGTAGAGTTTGTCTTTTGTTATACTGAATTTTAATAGGAATAGAAATCAC
TTGTGAGAAGAAAGGCCTG
Run BLAST on NCBI

transcript from alignment at sc0003033:6209..6577

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041815 ID=TCONS_00041815|Name=TCONS_00041815|organism=Clytia hemisphaerica|type=transcript|length=369bp|location=Sequence derived from alignment at sc0003033:6209..6577 (Clytia hemisphaerica)
CAGGCCTTTCTTCTCACAAGTGATTTCTATTCCTATTAAAATTCAGTATA
ACAAAAGACAAACTCTACATAATTATTAACTATAATTACTAATTTTAGCA
TCTTATAAATTCATTCAAATAAAACATATCTTTTTAATTCATGTATGACC
TATCACAAAGCCCCTTATATTCTtggaaaatatctcaaaattaaGCAGCT
AAATAAGACAAGCGACAAGCCTTTAGTTGAGAATATTTAAACATAGATTT
CACTGTATGGTAATAAAAGAACtcttcatttttatatgaaTGATCAAAAT
GACCATTATATGTCACTTTCATTCATTATACAAAAATAAACTGCCTTAAT
CTTTGAGGTTTGTGCCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025721XLOC_025721Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041815-exon-sc0003033-1491911889:6209..6577TCONS_00041815-exon-sc0003033-1491911889:6209..6577Clytia hemisphaericaexon
TCONS_00041815-exon-sc0003033-1510915933:6209..6577TCONS_00041815-exon-sc0003033-1510915933:6209..6577Clytia hemisphaericaexon
TCONS_00041815-exon-sc0003033-1575043694:6209..6577TCONS_00041815-exon-sc0003033-1575043694:6209..6577Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003033supercontigsc0003033:6209..6577 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	1.84779	0.261294	0	0.598046	0	0.285076	0.266885	0.195127	0.262409	0	0.777246	0	0	0	0	0	0	0.47142	0	1.53722	2.86019	0	0.619711	0	0	0	3.41924	2.34191	1.94247
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041815 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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