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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041806 ID=TCONS_00041806|Name=TCONS_00041806|organism=Clytia hemisphaerica|type=transcript|length=3367bp
tttggccggtatacagacataaaaaagtgcttagaaacATGCCTGCAGTG
AATGTCATGGATGTCATTATAAGATAGCCATTTTTTTAGCATTATTTCac
acttttaaaaatagaatttttgacttATTTAGGTTTTAAATTTTGCTTTA
ACAGTTTtactttttaacctttttttagTTTGATGAAACAACCATTATCA
ATGCTGATGATGCTGTTCTGAAGAGACATGGATTAGAAGCTGAGGGAGAC
ATAATTCGTTTAAGAATCTTGTGCCAACAGGGGGATACAAATACCAGAAA
AGTTCACCTTAAGCAAACGATAGCAGAAGGATCAANGGAGACATAATTCG
TTTAAGAATCTTGTGCCAACAGGGGGATACAAATACCAGAAAAGTTCACC
TTAAGCAAACGATAGCAGAAGGATCAAAAACTAGAATGGCAGCCGGACAG
TCATTTGAAAAGAGTCCACCTAAAGAAAAAACAAGAGCAGTATACATATC
ATGGAAGGTGTTTGATAAAAAGTTAGATCGCTATGTCCAAATAAAGCGAA
AGCGTGGTGGCGGCAGTGTTAAATTCGATTTTTCTTTGAGTGCTGGAAAA
GATGAAGTGCTATCAGAGGCCATCAAACACTTCTGGAAACTCAAGGTAGC
TAAAGTTGCAGATGGTGCTAAAGAAGATTATTTTTTCCATCTTGTCGATG
AACGTGATCAACCAATTCCAGACGTTCTTGCATATCCAAATGACAGTGAA
GTTCCTTTCACAGTATTAAGTTATGTAAAGCTCTTCAAACTTCCGCGacc
aaaaataattcttttaacAAAGGAGAAGTCGAACCAACAAAAGATTTTAA
GCCATCCTAGTTTTATTGACAGCGACGAAGGTGAACAAATTGACCTAGAC
ACTCTTACTACATCTCCTGTCCATCAATCAACTCCAAGACAAGTGAATCC
AAGTGAACACCTAACCCCTGTCAGCACTCCTACACCAACTTCAAGACAAA
TAAACTCAATTCCAGATTTTACCCCTGAAAATAGCCCTACCCAAACTGCA
GCACCAAGACAGACAAATCCAAATGGAGGAATGCTGATAGGATCAAGCGA
AGAACGTGATGCTCTCAGAATGCAAATAGATAAGGCAGTTTTAGAATCAA
TGATTGCTGATCGCCAAAGAGATGTTGAGCGCCAAAGAGAAATGGAACAT
CAGAGGGAGAATGAAATAACACTACAAAGAGAACAAGCTGCTGAAATCGA
AAAGCAAGcaaaaatcaatcaaataatgGAAAAAAGAAGATCACTGGTGA
AACCCGAGGCTGACCTTCAAGATGACCATGTAATTGTACGTGTGAGACAC
CCTACTATTGGTAATATCACTAGAATGTTCTTCCACAACCAAACAATGAT
GGACGTGTATTTTTGGGTGGGATCACTTACCAATGATCCCCTTTTTTTTC
AACTAACAGACTGTGATAATGTTATTAGATTCccagatgaaaaaataaat
caggGAGTCTATAACATGGCTTCAAGAAGTGACAATATTAATATGTCCAG
GGATGGTGACATCATGTTCAAAGATTTTGCATCCGCTTTCAACAACGAAG
ACATCATACAAATCTCAGCTGCTGAAGAACCTAACTCATCTGTTGTAACT
AATTCGTCTCTTGTACCTAATTCGTCTCTTGTGACCGACCCATCTGNTTG
TAACTAATTCGTCTCTTGTACCTAATTCGTCTCTTGTGACCGACCCATCT
GTTGTGACCAACCCGTCTGTTGTGACCAACTCGTCTGTTGTACCTAACTT
AATTGGTGATTCCAGTTTTTTCAGTGCTCCTAACTTGGCCGGTGATCCCA
ATTTGTTGAATAACCTTAATGATGTTGAAGCTCCACCAAACTACCAGCGG
CTAGAACAACTTCGTCTTTTGGAAGAAATGAAGCTATCAAGAGAGGAAAT
GTTTATTGTGAACAGAGATAATATTTTTCAAGACTTTCTTGCTGCGTATC
AAAGTTTTGATGATACTGCTGtttacaaattcaaattttgctttaagGGA
GAAGATGCAGTAGGAGACGGAGTGACACGCGAAGCTTACACATGTTTCTT
TGAACAGCTATATGAAAACTGCGACGGTAATCAAGAATGTGTGCCAACGC
ATTCCTTTACTGTAAATGACTTAAATGTTATAGGAACAATCATAACGCAT
GGCTTCGTAACATATCAAGTTTTCCCAGTGAAACTGTGCAAAGCATCCTT
AAAGCATCAATTGTTTGGCAATGTGTCAAGTGAGGACCTTGGGTCGTCCT
TTCATCGGTTTGTTTTAACTGCAGAAAGTgatcttttaaaaaagattgaa
aatggtGTTGTTACAGAAACGCAGGCAATACTCAATGTTTTTAGTGATGC
TGGAGTGTTTACTTTACCtacaaagcaaaatatcaaagagCTTGTTTTGA
AAGTTAGTAATGTTCTACTTATAAGAAGCTGTACTTATGAAATGAATGTA
ATTTCGACAGGTATGggagaattttggaaaaatgctGGACCTGACTGCTT
AGATGCCCTTTACAAGTGTACAATTCCAACTGCAGAAAATATTATTGAAG
CTTTGCACCCCGAAGAGAAAATCCGATCTGACCAGCAATTAACCACTTAT
TTACACCGATTTATTCGATCATGTGATTTTGACGACCTCCTTGGATTGAC
AAGATTCGTAACCGGCTCCCATTCCGTTTATCCAGGTCTCCAGATTTCTG
TCAAATTTGTAGACCCATCCAGTGATCAACTACCAAGATCGAAAATGTGC
TTTAACATCTTGTATTTGCCAAGAGGTTACACATCTATGCGCCAGTTCAG
AAATCGCTTTTTTGCAGCCATTAGACATGAAGAATTCTTTGAAGTTACTG
ATGGCATTGAATTTGAAGGCGATCTTTAGCATCGTGACTTCATtagtttt
taacttttatatttctttgaaaatatcttgattttgttttcaatttctga
AGTCATGGTTCTTTGATTttgtttcaagaatttttagCTTAAGTTCAGGC
TAAAATCTTTGAGAAACAGTCCCTTGTTTTGGAAACCATTTATACTTATT
TTACACTTTTACATTTCCATTCATTTCAATTTAGTTAAACTGGAAAATGG
AAGGCCTTAGGTCTCATCCtagatttttgtttagttttctgCATTCTTTT
TCTCCATCTTAAAATTTGTGGAGCTAATGACGTCGCTCAATCATTAGACT
CAAACTACAAACGAGAGTTTGtgaattcaaaaagtttgtaTTTGGTTAgt
cattttaactttttaatatTTATCTGTTATTAGTTGTATTTCTATTTGAT
ATATAATCATGAGCCAG Run BLAST on NCBI protein sequence of TCONS_00041806-protein >TCONS_00041806-protein ID=TCONS_00041806-protein|Name=TCONS_00041806-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MAAGQSFEKSPPKEKTRAVYISWKVFDKKLDRYVQIKRKRGGGSVKFDFS
LSAGKDEVLSEAIKHFWKLKVAKVADGAKEDYFFHLVDERDQPIPDVLAY
PNDSEVPFTVLSYVKLFKLPRPKIILLTKEKSNQQKILSHPSFIDSDEGE
QIDLDTLTTSPVHQSTPRQVNPSEHLTPVSTPTPTSRQINSIPDFTPENS
PTQTAAPRQTNPNGGMLIGSSEERDALRMQIDKAVLESMIADRQRDVERQ
REMEHQRENEITLQREQAAEIEKQAKINQIMEKRRSLVKPEADLQDDHVI
VRVRHPTIGNITRMFFHNQTMMDVYFWVGSLTNDPLFFQLTDCDNVIRFP
DEKINQGVYNMASRSDNINMSRDGDIMFKDFASAFNNEDIIQISAAEEPN
SSVVTNSSLVPNSSLVTDPSXCN Run BLAST on NCBI transcript from alignment at sc0003028:11111..14477 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041806 ID=TCONS_00041806|Name=TCONS_00041806|organism=Clytia hemisphaerica|type=transcript|length=3367bp|location=Sequence derived from alignment at sc0003028:11111..14477 (Clytia hemisphaerica)
CTGGCTCATGATTATATATCAAATAGAAATACAACTAATAACAGATAAat
attaaaaagttaaaatgacTAACCAAAtacaaactttttgaattcaCAAA
CTCTCGTTTGTAGTTTGAGTCTAATGATTGAGCGACGTCATTAGCTCCAC
AAATTTTAAGATGGAGAAAAAGAATGcagaaaactaaacaaaaatctaGG
ATGAGACCTAAGGCCTTCCATTTTCCAGTTTAACTAAATTGAAATGAATG
GAAATGTAAAAGTGTAAAATAAGTATAAATGGTTTCCAAAACAAGGGACT
GTTTCTCAAAGATTTTAGCCTGAACTTAAGctaaaaattcttgaaacaaA
ATCAAAGAACCATGACTtcagaaattgaaaacaaaatcaagatattttca
aagaaatataaaagttaaaaactaATGAAGTCACGATGCTAAAGATCGCC
TTCAAATTCAATGCCATCAGTAACTTCAAAGAATTCTTCATGTCTAATGG
CTGCAAAAAAGCGATTTCTGAACTGGCGCATAGATGTGTAACCTCTTGGC
AAATACAAGATGTTAAAGCACATTTTCGATCTTGGTAGTTGATCACTGGA
TGGGTCTACAAATTTGACAGAAATCTGGAGACCTGGATAAACGGAATGGG
AGCCGGTTACGAATCTTGTCAATCCAAGGAGGTCGTCAAAATCACATGAT
CGAATAAATCGGTGTAAATAAGTGGTTAATTGCTGGTCAGATCGGATTTT
CTCTTCGGGGTGCAAAGCTTCAATAATATTTTCTGCAGTTGGAATTGTAC
ACTTGTAAAGGGCATCTAAGCAGTCAGGTCCagcatttttccaaaattct
ccCATACCTGTCGAAATTACATTCATTTCATAAGTACAGCTTCTTATAAG
TAGAACATTACTAACTTTCAAAACAAGctctttgatattttgctttgtaG
GTAAAGTAAACACTCCAGCATCACTAAAAACATTGAGTATTGCCTGCGTT
TCTGTAACAACaccattttcaatcttttttaaaagatcACTTTCTGCAGT
TAAAACAAACCGATGAAAGGACGACCCAAGGTCCTCACTTGACACATTGC
CAAACAATTGATGCTTTAAGGATGCTTTGCACAGTTTCACTGGGAAAACT
TGATATGTTACGAAGCCATGCGTTATGATTGTTCCTATAACATTTAAGTC
ATTTACAGTAAAGGAATGCGTTGGCACACATTCTTGATTACCGTCGCAGT
TTTCATATAGCTGTTCAAAGAAACATGTGTAAGCTTCGCGTGTCACTCCG
TCTCCTACTGCATCTTCTCCcttaaagcaaaatttgaatttgtaaaCAGC
AGTATCATCAAAACTTTGATACGCAGCAAGAAAGTCTTGAAAAATATTAT
CTCTGTTCACAATAAACATTTCCTCTCTTGATAGCTTCATTTCTTCCAAA
AGACGAAGTTGTTCTAGCCGCTGGTAGTTTGGTGGAGCTTCAACATCATT
AAGGTTATTCAACAAATTGGGATCACCGGCCAAGTTAGGAGCACTGAAAA
AACTGGAATCACCAATTAAGTTAGGTACAACAGACGAGTTGGTCACAACA
GACGGGTTGGTCACAACAGATGGGTCGGTCACAAGAGACGAATTAGGTAC
AAGAGACGAATTAGTTACAANCAGATGGGTCGGTCACAAGAGACGAATTA
GGTACAAGAGACGAATTAGTTACAACAGATGAGTTAGGTTCTTCAGCAGC
TGAGATTTGTATGATGTCTTCGTTGTTGAAAGCGGATGCAAAATCTTTGA
ACATGATGTCACCATCCCTGGACATATTAATATTGTCACTTCTTGAAGCC
ATGTTATAGACTCcctgatttattttttcatctggGAATCTAATAACATT
ATCACAGTCTGTTAGTTGAAAAAAAAGGGGATCATTGGTAAGTGATCCCA
CCCAAAAATACACGTCCATCATTGTTTGGTTGTGGAAGAACATTCTAGTG
ATATTACCAATAGTAGGGTGTCTCACACGTACAATTACATGGTCATCTTG
AAGGTCAGCCTCGGGTTTCACCAGTGATCTTCTTTTTTCcattatttgat
tgatttttgCTTGCTTTTCGATTTCAGCAGCTTGTTCTCTTTGTAGTGTT
ATTTCATTCTCCCTCTGATGTTCCATTTCTCTTTGGCGCTCAACATCTCT
TTGGCGATCAGCAATCATTGATTCTAAAACTGCCTTATCTATTTGCATTC
TGAGAGCATCACGTTCTTCGCTTGATCCTATCAGCATTCCTCCATTTGGA
TTTGTCTGTCTTGGTGCTGCAGTTTGGGTAGGGCTATTTTCAGGGGTAAA
ATCTGGAATTGAGTTTATTTGTCTTGAAGTTGGTGTAGGAGTGCTGACAG
GGGTTAGGTGTTCACTTGGATTCACTTGTCTTGGAGTTGATTGATGGACA
GGAGATGTAGTAAGAGTGTCTAGGTCAATTTGTTCACCTTCGTCGCTGTC
AATAAAACTAGGATGGCTTAAAATCTTTTGTTGGTTCGACTTCTCCTTTg
ttaaaagaattatttttggtCGCGGAAGTTTGAAGAGCTTTACATAACTT
AATACTGTGAAAGGAACTTCACTGTCATTTGGATATGCAAGAACGTCTGG
AATTGGTTGATCACGTTCATCGACAAGATGGAAAAAATAATCTTCTTTAG
CACCATCTGCAACTTTAGCTACCTTGAGTTTCCAGAAGTGTTTGATGGCC
TCTGATAGCACTTCATCTTTTCCAGCACTCAAAGAAAAATCGAATTTAAC
ACTGCCGCCACCACGCTTTCGCTTTATTTGGACATAGCGATCTAACTTTT
TATCAAACACCTTCCATGATATGTATACTGCTCTTGTTTTTTCTTTAGGT
GGACTCTTTTCAAATGACTGTCCGGCTGCCATTCTAGTTTTTGATCCTTC
TGCTATCGTTTGCTTAAGGTGAACTTTTCTGGTATTTGTATCCCCCTGTT
GGCACAAGATTCTTAAACGAATTATGTCTCCNTTGATCCTTCTGCTATCG
TTTGCTTAAGGTGAACTTTTCTGGTATTTGTATCCCCCTGTTGGCACAAG
ATTCTTAAACGAATTATGTCTCCCTCAGCTTCTAATCCATGTCTCTTCAG
AACAGCATCATCAGCATTGATAATGGTTGTTTCATCAAActaaaaaaagg
ttaaaaagtaAAACTGTTAAAGCAAAATTTAAAACCTAAATaagtcaaaa
attctatttttaaaagtgtGAAATAATGCTAAAAAAATGGCTATCTTATA
ATGACATCCATGACATTCACTGCAGGCATgtttctaagcacttttttatg
tctgtataccggccaaa Coding sequence (CDS) from alignment at sc0003028:11111..14477 >TCONS_00041806 ID=TCONS_00041806|Name=TCONS_00041806|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0003028:11111..14477 (Clytia hemisphaerica)
TTAGTTACAANCAGATGGGTCGGTCACAAGAGACGAATTAGGTACAAGAG
ACGAATTAGTTACAACAGATGAGTTAGGTTCTTCAGCAGCTGAGATTTGT
ATGATGTCTTCGTTGTTGAAAGCGGATGCAAAATCTTTGAACATGATGTC
ACCATCCCTGGACATATTAATATTGTCACTTCTTGAAGCCATGTTATAGA
CTCcctgatttattttttcatctggGAATCTAATAACATTATCACAGTCT
GTTAGTTGAAAAAAAAGGGGATCATTGGTAAGTGATCCCACCCAAAAATA
CACGTCCATCATTGTTTGGTTGTGGAAGAACATTCTAGTGATATTACCAA
TAGTAGGGTGTCTCACACGTACAATTACATGGTCATCTTGAAGGTCAGCC
TCGGGTTTCACCAGTGATCTTCTTTTTTCcattatttgattgatttttgC
TTGCTTTTCGATTTCAGCAGCTTGTTCTCTTTGTAGTGTTATTTCATTCT
CCCTCTGATGTTCCATTTCTCTTTGGCGCTCAACATCTCTTTGGCGATCA
GCAATCATTGATTCTAAAACTGCCTTATCTATTTGCATTCTGAGAGCATC
ACGTTCTTCGCTTGATCCTATCAGCATTCCTCCATTTGGATTTGTCTGTC
TTGGTGCTGCAGTTTGGGTAGGGCTATTTTCAGGGGTAAAATCTGGAATT
GAGTTTATTTGTCTTGAAGTTGGTGTAGGAGTGCTGACAGGGGTTAGGTG
TTCACTTGGATTCACTTGTCTTGGAGTTGATTGATGGACAGGAGATGTAG
TAAGAGTGTCTAGGTCAATTTGTTCACCTTCGTCGCTGTCAATAAAACTA
GGATGGCTTAAAATCTTTTGTTGGTTCGACTTCTCCTTTgttaaaagaat
tatttttggtCGCGGAAGTTTGAAGAGCTTTACATAACTTAATACTGTGA
AAGGAACTTCACTGTCATTTGGATATGCAAGAACGTCTGGAATTGGTTGA
TCACGTTCATCGACAAGATGGAAAAAATAATCTTCTTTAGCACCATCTGC
AACTTTAGCTACCTTGAGTTTCCAGAAGTGTTTGATGGCCTCTGATAGCA
CTTCATCTTTTCCAGCACTCAAAGAAAAATCGAATTTAACACTGCCGCCA
CCACGCTTTCGCTTTATTTGGACATAGCGATCTAACTTTTTATCAAACAC
CTTCCATGATATGTATACTGCTCTTGTTTTTTCTTTAGGTGGACTCTTTT
CAAATGACTGTCCGGCTGCCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
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| TCONS_00041806-exon-sc0003028-1491911889:11111..14477 | TCONS_00041806-exon-sc0003028-1491911889:11111..14477 | Clytia hemisphaerica | exon |
| TCONS_00041806-exon-sc0003028-1510915933:11111..14477 | TCONS_00041806-exon-sc0003028-1510915933:11111..14477 | Clytia hemisphaerica | exon |
| TCONS_00041806-exon-sc0003028-1575043694:11111..14477 | TCONS_00041806-exon-sc0003028-1575043694:11111..14477 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003028 | supercontig | sc0003028:11111..14477 . |
Blast
The following BLAST results are available for this feature:
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