TCONS_00041803 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041803
Unique NameTCONS_00041803
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length564

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041803 ID=TCONS_00041803|Name=TCONS_00041803|organism=Clytia hemisphaerica|type=transcript|length=564bp
TTGTGCCAAGAGTCGTTGAATTTGCCGGCTGGAGTTGTGACTCGAACCTT
GGGGTCGAGGGAAGGACTCGTGCCAAGAGTCGTTGAATTTGCTGGCTGGA
GTTGTGACTCGAACCTTGGGGTCGAGGGAAGGACCCGTGCCAAGAGTCGT
TGAATTTGCCGGCTGGAGTTGTGACTCGAACCTTGGGGTCGAGGGAAGGA
CTCGTGCCAAGAGTCGTTGAATTTGCTGGCTGGAGTTGTGACTCGAACCT
TGGAGTCGAGGGAAGGACTCGTGCCAAGAGTCGTTGAATTTGCTGGCTGG
AGTTGTGAATCGAACCTTGGGGTCGAGGGAAGGACCCGTGCCAAGGGTCG
TTGAATTTGCTGGCTGGAGTTGTGAATCGAACCTTGGGGTCGAGGGAATG
ACCTGTGCCAAGGGTCGTTGAATTTGCTGGCTGGAGTTGTGACTCGAACC
TTGGGGTCGAGGGAAGGACTCGTGCCAAGAGTCGTTGAATTTGCTGGCTG
GAGTTGTGACTCGAACCTTGGGGTCGAGGGAAGGACTCGTGCCAAGAGTC
GTTGAATTTGCTGG
Run BLAST on NCBI

protein sequence of TCONS_00041803-protein

>TCONS_00041803-protein ID=TCONS_00041803-protein|Name=TCONS_00041803-protein|organism=Clytia hemisphaerica|type=polypeptide|length=188bp
PANSTTLGTSPSLDPKVRVTTPASKFNDSWHESFPRPQGSSHNSSQQIQR
PLAQVIPSTPRFDSQLQPANSTTLGTGPSLDPKVRFTTPASKFNDSWHES
FPRLQGSSHNSSQQIQRLLARVLPSTPRFESQLQPANSTTLGTGPSLDPK
VRVTTPASKFNDSWHESFPRPQGSSHNSSRQIQRLLAQ
Run BLAST on NCBI

transcript from alignment at sc0003026:5527..6090

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041803 ID=TCONS_00041803|Name=TCONS_00041803|organism=Clytia hemisphaerica|type=transcript|length=564bp|location=Sequence derived from alignment at sc0003026:5527..6090 (Clytia hemisphaerica)
CCAGCAAATTCAACGACTCTTGGCACGAGTCCTTCCCTCGACCCCAAGGT
TCGAGTCACAACTCCAGCCAGCAAATTCAACGACTCTTGGCACGAGTCCT
TCCCTCGACCCCAAGGTTCGAGTCACAACTCCAGCCAGCAAATTCAACGA
CCCTTGGCACAGGTCATTCCCTCGACCCCAAGGTTCGATTCACAACTCCA
GCCAGCAAATTCAACGACCCTTGGCACGGGTCCTTCCCTCGACCCCAAGG
TTCGATTCACAACTCCAGCCAGCAAATTCAACGACTCTTGGCACGAGTCC
TTCCCTCGACTCCAAGGTTCGAGTCACAACTCCAGCCAGCAAATTCAACG
ACTCTTGGCACGAGTCCTTCCCTCGACCCCAAGGTTCGAGTCACAACTCC
AGCCGGCAAATTCAACGACTCTTGGCACGGGTCCTTCCCTCGACCCCAAG
GTTCGAGTCACAACTCCAGCCAGCAAATTCAACGACTCTTGGCACGAGTC
CTTCCCTCGACCCCAAGGTTCGAGTCACAACTCCAGCCGGCAAATTCAAC
GACTCTTGGCACAA

Coding sequence (CDS) from alignment at sc0003026:5527..6090

>TCONS_00041803 ID=TCONS_00041803|Name=TCONS_00041803|organism=Clytia hemisphaerica|type=CDS|length=564bp|location=Sequence derived from alignment at sc0003026:5527..6090 (Clytia hemisphaerica)
CCAGCAAATTCAACGACTCTTGGCACGAGTCCTTCCCTCGACCCCAAGGT
TCGAGTCACAACTCCAGCCAGCAAATTCAACGACTCTTGGCACGAGTCCT
TCCCTCGACCCCAAGGTTCGAGTCACAACTCCAGCCAGCAAATTCAACGA
CCCTTGGCACAGGTCATTCCCTCGACCCCAAGGTTCGATTCACAACTCCA
GCCAGCAAATTCAACGACCCTTGGCACGGGTCCTTCCCTCGACCCCAAGG
TTCGATTCACAACTCCAGCCAGCAAATTCAACGACTCTTGGCACGAGTCC
TTCCCTCGACTCCAAGGTTCGAGTCACAACTCCAGCCAGCAAATTCAACG
ACTCTTGGCACGAGTCCTTCCCTCGACCCCAAGGTTCGAGTCACAACTCC
AGCCGGCAAATTCAACGACTCTTGGCACGGGTCCTTCCCTCGACCCCAAG
GTTCGAGTCACAACTCCAGCCAGCAAATTCAACGACTCTTGGCACGAGTC
CTTCCCTCGACCCCAAGGTTCGAGTCACAACTCCAGCCGGCAAATTCAAC
GACTCTTGGCACAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025709XLOC_025709Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041803-exon-sc0003026-1491911889:5527..6090TCONS_00041803-exon-sc0003026-1491911889:5527..6090Clytia hemisphaericaexon
TCONS_00041803-exon-sc0003026-1510915933:5527..6090TCONS_00041803-exon-sc0003026-1510915933:5527..6090Clytia hemisphaericaexon
TCONS_00041803-exon-sc0003026-1575043694:5527..6090TCONS_00041803-exon-sc0003026-1575043694:5527..6090Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041803-proteinTCONS_00041803-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003026supercontigsc0003026:5527..6090 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.0974546	0.113154	0.221407	0.134771	0.319494	0.128485	0.360859	0	0.312943	0.10125	0.199673	0.13293	0	0.453982	0.60899	0.30009	0.845853	0.95612	0.333504	0.3865	0.141391	0	0.312526	0.965684	0.287283	1.2333	1.16997	2.10753	1.92121
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041803 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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