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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041793 ID=TCONS_00041793|Name=TCONS_00041793|organism=Clytia hemisphaerica|type=transcript|length=1150bp
CAGGAAGAGCGCCGTGTGGGACGTATATTGTTCCTTGAAGTGAATGGACT
GCAGCAGAAACCTGATCTTTGGAATGTACGGAAGATCCATCAACATCAAC
CACCCCAGATGACTCCATAACCAATAAATTCGGATCAGTGGTTTCGATAT
CAGCCTCATTTAAATCCATCTGCGGGGTGTAATTTGCATGTTCGTTTTCA
TCTTCATTATTCGGATCTTCGTGTAGAGTCAGAGTGGTCAGAATTTCTTC
AGGGATATCATCTTCAGGTAGACTAACAGATGACAAAACAACATTTGCAT
AGAGTGGATGATTTGAAATTAAAAAATTCAGCGCATCGTGAACTTTTTGT
CTTCTAACTTTGAACACTTTCTTTAGAAGTTCTCGAGAAGGGGCACCATT
ACCAATAAAAACAACCTTTAAATGATCGGCAAAAATGTTCGGGTTTGCTG
GTAAACTTTCCGCAATCTTTACAACATCTTGGGGGAACGTGATGGTGTTT
CCTTTTATTCCATATTGTGCAGTTCCTGGACCAGCAAAAGACCGAAGTGT
TGTTACATACATTTTTGGACGGTAAAATGATATCAGCAATTTTTCTGGTA
AAGTCAAATCACAAAGCTCCGGCGGTGCTTTTCCAAATAGAAATTGATTG
GAAATACTCAACGGAGGCAACTTTCCATTTTGCAGATGACGCAAACATGT
TTTGCAACAAACAACGTTCTGTTCATCGATACCACCAGATGATAAGATCA
AACCACCATGCCTGTATTCTTCTAGTATTTCACCATCAAATGAATCCTGA
GATATCACATCTTTGTTAGGGATGTCATCGATACAGAATTTCTCATAGTC
GTGAACTGATTCAGCACAAACTCCACACTCAAGATAAATAGTAGAATGAT
TTGAAGTTGCATCGATGAAGCTTTCCAAGCAAATATTTATTTGATCAGGC
GTGATGGTAGGAGGAAAGTTTATTTCTTCAAAGGCTGCAGCTTGTTCCTG
TATTAGGCGTTCTCTTGCCCTTGCATGTTGGCTTGCATCTTTATCTATTC
TCGCTTGCTTTTCATGAGCAATTTCGTTCTTTCTGGCTTCAGCGTTTCTT
GTGGCGTTTTGTTGCTTCCTTCCCTGCTTTTCATGAGCGGTTTCGTTCTT Run BLAST on NCBI protein sequence of TCONS_00041793-protein >TCONS_00041793-protein ID=TCONS_00041793-protein|Name=TCONS_00041793-protein|organism=Clytia hemisphaerica|type=polypeptide|length=383bp
KNETAHEKQGRKQQNATRNAEARKNEIAHEKQARIDKDASQHARARERLI
QEQAAAFEEINFPPTITPDQINICLESFIDATSNHSTIYLECGVCAESVH
DYEKFCIDDIPNKDVISQDSFDGEILEEYRHGGLILSSGGIDEQNVVCCK
TCLRHLQNGKLPPLSISNQFLFGKAPPELCDLTLPEKLLISFYRPKMYVT
TLRSFAGPGTAQYGIKGNTITFPQDVVKIAESLPANPNIFADHLKVVFIG
NGAPSRELLKKVFKVRRQKVHDALNFLISNHPLYANVVLSSVSLPEDDIP
EEILTTLTLHEDPNNEDENEHANYTPQMDLNEADIETTDPNLLVMESSGV
VDVDGSSVHSKDQVSAAVHSLQGTIYVPHGALP Run BLAST on NCBI transcript from alignment at sc0003023:2022..3171 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041793 ID=TCONS_00041793|Name=TCONS_00041793|organism=Clytia hemisphaerica|type=transcript|length=1150bp|location=Sequence derived from alignment at sc0003023:2022..3171 (Clytia hemisphaerica)
AAGAACGAAACCGCTCATGAAAAGCAGGGAAGGAAGCAACAAAACGCCAC
AAGAAACGCTGAAGCCAGAAAGAACGAAATTGCTCATGAAAAGCAAGCGA
GAATAGATAAAGATGCAAGCCAACATGCAAGGGCAAGAGAACGCCTAATA
CAGGAACAAGCTGCAGCCTTTGAAGAAATAAACTTTCCTCCTACCATCAC
GCCTGATCAAATAAATATTTGCTTGGAAAGCTTCATCGATGCAACTTCAA
ATCATTCTACTATTTATCTTGAGTGTGGAGTTTGTGCTGAATCAGTTCAC
GACTATGAGAAATTCTGTATCGATGACATCCCTAACAAAGATGTGATATC
TCAGGATTCATTTGATGGTGAAATACTAGAAGAATACAGGCATGGTGGTT
TGATCTTATCATCTGGTGGTATCGATGAACAGAACGTTGTTTGTTGCAAA
ACATGTTTGCGTCATCTGCAAAATGGAAAGTTGCCTCCGTTGAGTATTTC
CAATCAATTTCTATTTGGAAAAGCACCGCCGGAGCTTTGTGATTTGACTT
TACCAGAAAAATTGCTGATATCATTTTACCGTCCAAAAATGTATGTAACA
ACACTTCGGTCTTTTGCTGGTCCAGGAACTGCACAATATGGAATAAAAGG
AAACACCATCACGTTCCCCCAAGATGTTGTAAAGATTGCGGAAAGTTTAC
CAGCAAACCCGAACATTTTTGCCGATCATTTAAAGGTTGTTTTTATTGGT
AATGGTGCCCCTTCTCGAGAACTTCTAAAGAAAGTGTTCAAAGTTAGAAG
ACAAAAAGTTCACGATGCGCTGAATTTTTTAATTTCAAATCATCCACTCT
ATGCAAATGTTGTTTTGTCATCTGTTAGTCTACCTGAAGATGATATCCCT
GAAGAAATTCTGACCACTCTGACTCTACACGAAGATCCGAATAATGAAGA
TGAAAACGAACATGCAAATTACACCCCGCAGATGGATTTAAATGAGGCTG
ATATCGAAACCACTGATCCGAATTTATTGGTTATGGAGTCATCTGGGGTG
GTTGATGTTGATGGATCTTCCGTACATTCCAAAGATCAGGTTTCTGCTGC
AGTCCATTCACTTCAAGGAACAATATACGTCCCACACGGCGCTCTTCCTG
Coding sequence (CDS) from alignment at sc0003023:2022..3171 >TCONS_00041793 ID=TCONS_00041793|Name=TCONS_00041793|organism=Clytia hemisphaerica|type=CDS|length=1149bp|location=Sequence derived from alignment at sc0003023:2022..3171 (Clytia hemisphaerica)
AAGAACGAAACCGCTCATGAAAAGCAGGGAAGGAAGCAACAAAACGCCAC
AAGAAACGCTGAAGCCAGAAAGAACGAAATTGCTCATGAAAAGCAAGCGA
GAATAGATAAAGATGCAAGCCAACATGCAAGGGCAAGAGAACGCCTAATA
CAGGAACAAGCTGCAGCCTTTGAAGAAATAAACTTTCCTCCTACCATCAC
GCCTGATCAAATAAATATTTGCTTGGAAAGCTTCATCGATGCAACTTCAA
ATCATTCTACTATTTATCTTGAGTGTGGAGTTTGTGCTGAATCAGTTCAC
GACTATGAGAAATTCTGTATCGATGACATCCCTAACAAAGATGTGATATC
TCAGGATTCATTTGATGGTGAAATACTAGAAGAATACAGGCATGGTGGTT
TGATCTTATCATCTGGTGGTATCGATGAACAGAACGTTGTTTGTTGCAAA
ACATGTTTGCGTCATCTGCAAAATGGAAAGTTGCCTCCGTTGAGTATTTC
CAATCAATTTCTATTTGGAAAAGCACCGCCGGAGCTTTGTGATTTGACTT
TACCAGAAAAATTGCTGATATCATTTTACCGTCCAAAAATGTATGTAACA
ACACTTCGGTCTTTTGCTGGTCCAGGAACTGCACAATATGGAATAAAAGG
AAACACCATCACGTTCCCCCAAGATGTTGTAAAGATTGCGGAAAGTTTAC
CAGCAAACCCGAACATTTTTGCCGATCATTTAAAGGTTGTTTTTATTGGT
AATGGTGCCCCTTCTCGAGAACTTCTAAAGAAAGTGTTCAAAGTTAGAAG
ACAAAAAGTTCACGATGCGCTGAATTTTTTAATTTCAAATCATCCACTCT
ATGCAAATGTTGTTTTGTCATCTGTTAGTCTACCTGAAGATGATATCCCT
GAAGAAATTCTGACCACTCTGACTCTACACGAAGATCCGAATAATGAAGA
TGAAAACGAACATGCAAATTACACCCCGCAGATGGATTTAAATGAGGCTG
ATATCGAAACCACTGATCCGAATTTATTGGTTATGGAGTCATCTGGGGTG
GTTGATGTTGATGGATCTTCCGTACATTCCAAAGATCAGGTTTCTGCTGC
AGTCCATTCACTTCAAGGAACAATATACGTCCCACACGGCGCTCTTCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041793-exon-sc0003023-1491911889:2022..3171 | TCONS_00041793-exon-sc0003023-1491911889:2022..3171 | Clytia hemisphaerica | exon |
| TCONS_00041793-exon-sc0003023-1510915933:2022..3171 | TCONS_00041793-exon-sc0003023-1510915933:2022..3171 | Clytia hemisphaerica | exon |
| TCONS_00041793-exon-sc0003023-1575043694:2022..3171 | TCONS_00041793-exon-sc0003023-1575043694:2022..3171 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003023 | supercontig | sc0003023:2022..3171 . |
Blast
The following BLAST results are available for this feature:
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