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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041792 ID=TCONS_00041792|Name=TCONS_00041792|organism=Clytia hemisphaerica|type=transcript|length=609bp
CCATGTCAGCAAGGTTACAAATTTGTATTTGGAATTTTGACTTCAAGATC
AGAGTCTAAGCCCATTAAGACAATGGACTTTATAATTGGTATTAGTGACG
ATGACTGGCATGTTTACTACCACGAGAAGAAAATACTCAGAGAAAACTGT
TTTTTGAGAGACCTACCAAGCATTTTGAGCAAAGATACAATTAATGAAGT
CTTGAGCAAGCTTGCTGAAATAGAAATATGTCCAGGAAATCAAGACTTTC
CTGATCTTATCAAAGAGAAGCTTGATATCCAGGGCACTTGTGATTTCAAA
GACCAGAGTGGCAAAATCATCAGAGCTGAGGTGCAAAATTCTACATTTTC
TGGCATCTCACAGCTATCGACCATCAGAGTGGGTACATGCTCTCTGGTCA
CTACAAACTCAAACCAAAGATGTGATGAGTGCAAGATTTATAGACGGAAT
CTGCAAAAAAAGGCTATCAAGCGTCGAAAATGTTTGGAGAACCGTACCTC
TCATGCACCAAGTAGTTTTACCAACAACCGCTGGCTCAAAAGATCACAGT
TGAATGCTAAGTGTGAGGACCAACAAAAATGTATTAAATCATTGAGAAGG
AGTCTTGAT Run BLAST on NCBI protein sequence of TCONS_00041792-protein >TCONS_00041792-protein ID=TCONS_00041792-protein|Name=TCONS_00041792-protein|organism=Clytia hemisphaerica|type=polypeptide|length=203bp
PCQQGYKFVFGILTSRSESKPIKTMDFIIGISDDDWHVYYHEKKILRENC
FLRDLPSILSKDTINEVLSKLAEIEICPGNQDFPDLIKEKLDIQGTCDFK
DQSGKIIRAEVQNSTFSGISQLSTIRVGTCSLVTTNSNQRCDECKIYRRN
LQKKAIKRRKCLENRTSHAPSSFTNNRWLKRSQLNAKCEDQQKCIKSLRR
SLD Run BLAST on NCBI transcript from alignment at sc0003023:13973..14905+ Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041792 ID=TCONS_00041792|Name=TCONS_00041792|organism=Clytia hemisphaerica|type=transcript|length=933bp|location=Sequence derived from alignment at sc0003023:13973..14905+ (Clytia hemisphaerica)
CCATGTCAGCAAGGTTACAAATTTGTATTTGGAATTTTGACTTCAAGATC
AGAGTCTAAGCCCATTAAGACAATGGACTTTATAATTGGTATTAGTGACG
ATGACTGGCATGTTTACTACCACGAGAAGAAAATACTCAGAGAAAACTGT
TTTTTGAGAGACCTACCAAGCATTTTGAGCAAAGGTAATTcttggctgtt
tttttattaattatcaGAAACTTGAGCCACCTATAAAATCCTTCACCGTC
AATTTCTCTGACAATATTCTTAAAACTGACTATCTATTTTTGTGGTCCAA
AACGAGATAATATTTGCTAGTAGTGGGAGAAAATATTCTAATTTGTTCAA
ACGTGGAGAGGTTGGAGTCTCCCCAGCCTCCTTGCTTCTGCTAATAAGGA
GTTAGAAACGATTTTAATGCAATGAACATGTGCAAGCTGCAACTTTTCCC
ATATTGAGTGATTGTCAATTTAGAAGAATCTTCTACATTATGAATTTCTT
GTCCCTAGATACAATTAATGAAGTCTTGAGCAAGCTTGCTGAAATAGAAA
TATGTCCAGGAAATCAAGACTTTCCTGATCTTATCAAAGAGAAGCTTGAT
ATCCAGGGCACTTGTGATTTCAAAGACCAGAGTGGCAAAATCATCAGAGC
TGAGGTGCAAAATTCTACATTTTCTGGCATCTCACAGCTATCGACCATCA
GAGTGGGTACATGCTCTCTGGTCACTACAAACTCAAACCAAAGATGTGAT
GAGTGCAAGATTTATAGACGGAATCTGCAAAAAAAGGCTATCAAGCGTCG
AAAATGTTTGGAGAACCGTACCTCTCATGCACCAAGTAGTTTTACCAACA
ACCGCTGGCTCAAAAGATCACAGTTGAATGCTAAGTGTGAGGACCAACAA
AAATGTATTAAATCATTGAGAAGGAGTCTTGAT Coding sequence (CDS) from alignment at sc0003023:13973..14905+ >TCONS_00041792 ID=TCONS_00041792|Name=TCONS_00041792|organism=Clytia hemisphaerica|type=CDS|length=1218bp|location=Sequence derived from alignment at sc0003023:13973..14905+ (Clytia hemisphaerica)
CCATGTCAGCAAGGTTACAAATTTGTATTTGGAATTTTGACTTCAAGATC
AGAGTCTAAGCCCATTAAGACAATGGACTTTATAATTGGTATTAGTGACG
ATGACTGGCATGTTTACTACCACGAGAAGAAAATACTCAGAGAAAACTGT
TTTTTGAGAGACCTACCAAGCATTTTGAGCAAAGATACAATTAATGAAGT
CTTGAGCAAGCTTGCTGAAATAGAAATATGTCCAGGAAATCAAGACTTTC
CTGATCTTATCAAAGAGAAGCTTGATATCCAGGGCACTTGTGATTTCAAA
GACCAGAGTGGCAAAATCATCAGAGCTGAGGTGCAAAATTCTACATTTTC
TGGCATCTCACAGCTATCGACCATCAGAGTGGGTACATGCTCTCTGGTCA
CTACAAACTCAAACCAAAGATGTGATGAGTGCAAGATTTATAGACGGAAT
CTGCAAAAAAAGGCTATCAAGCGTCGAAAATGTTTGGAGAACCGTACCTC
TCATGCACCAAGTAGTTTTACCAACAACCGCTGGCTCAAAAGATCACAGT
TGAATGCTAAGTGTGAGGACCAACAAAAATGTATTAAATCATTGAGAAGG
AGTCTTGATCCATGTCAGCAAGGTTACAAATTTGTATTTGGAATTTTGAC
TTCAAGATCAGAGTCTAAGCCCATTAAGACAATGGACTTTATAATTGGTA
TTAGTGACGATGACTGGCATGTTTACTACCACGAGAAGAAAATACTCAGA
GAAAACTGTTTTTTGAGAGACCTACCAAGCATTTTGAGCAAAGATACAAT
TAATGAAGTCTTGAGCAAGCTTGCTGAAATAGAAATATGTCCAGGAAATC
AAGACTTTCCTGATCTTATCAAAGAGAAGCTTGATATCCAGGGCACTTGT
GATTTCAAAGACCAGAGTGGCAAAATCATCAGAGCTGAGGTGCAAAATTC
TACATTTTCTGGCATCTCACAGCTATCGACCATCAGAGTGGGTACATGCT
CTCTGGTCACTACAAACTCAAACCAAAGATGTGATGAGTGCAAGATTTAT
AGACGGAATCTGCAAAAAAAGGCTATCAAGCGTCGAAAATGTTTGGAGAA
CCGTACCTCTCATGCACCAAGTAGTTTTACCAACAACCGCTGGCTCAAAA
GATCACAGTTGAATGCTAAGTGTGAGGACCAACAAAAATGTATTAAATCA
TTGAGAAGGAGTCTTGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041792-exon-sc0003023-1491911889:13973..14156 | TCONS_00041792-exon-sc0003023-1491911889:13973..14156 | Clytia hemisphaerica | exon |
| TCONS_00041792-exon-sc0003023-1510915933:13973..14156 | TCONS_00041792-exon-sc0003023-1510915933:13973..14156 | Clytia hemisphaerica | exon |
| TCONS_00041792-exon-sc0003023-1575043694:13973..14156 | TCONS_00041792-exon-sc0003023-1575043694:13973..14156 | Clytia hemisphaerica | exon |
| TCONS_00041792-exon-sc0003023-1491911889:14481..14905 | TCONS_00041792-exon-sc0003023-1491911889:14481..14905 | Clytia hemisphaerica | exon |
| TCONS_00041792-exon-sc0003023-1510915933:14481..14905 | TCONS_00041792-exon-sc0003023-1510915933:14481..14905 | Clytia hemisphaerica | exon |
| TCONS_00041792-exon-sc0003023-1575043694:14481..14905 | TCONS_00041792-exon-sc0003023-1575043694:14481..14905 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003023 | supercontig | sc0003023:13973..14905 + |
Blast
The following BLAST results are available for this feature:
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