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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041781 ID=TCONS_00041781|Name=TCONS_00041781|organism=Clytia hemisphaerica|type=transcript|length=677bpRun BLAST on NCBI transcript from alignment at sc0003019:8360..9036- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00041781 ID=TCONS_00041781|Name=TCONS_00041781|organism=Clytia hemisphaerica|type=transcript|length=677bp|location=Sequence derived from alignment at sc0003019:8360..9036- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00041781 vs. Swiss-Prot (Human)
Match: ZN33A (Zinc finger protein 33A OS=Homo sapiens GN=ZNF33A PE=1 SV=3) HSP 1 Score: 77.411 bits (189), Expect = 3.885e-31 Identity = 41/80 (51.25%), Postives = 52/80 (65.00%), Query Frame = 1
Query: 424 AFRCQECGKSFAQNVDLTSHRRFFHEGIKAFECQEFGKCFIEKRNLNSQQRTVHEGVKPFRCQECGKCFAKKANLSLHQR 663
++C CGK+F Q DLT H+R H G+K +EC E GK F +L QRT H G KPF C ECGK F++K+NL+ HQR
Sbjct: 411 PYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRT-HTGEKPFECLECGKSFSEKSNLTQHQR 488 HSP 2 Score: 48.1358 bits (113), Expect = 3.885e-31 Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 3
Query: 156 DKPFKFNECVKFFTMKSNLKVHQRTVHEGIKPFLCQECSKSFGNKQN 296
+K F+ NEC K F KS+L HQR VH G KPF C EC K+F +K N
Sbjct: 325 EKHFECNECGKAFWEKSHLTRHQR-VHTGQKPFQCNECEKAFWDKSN 370 HSP 3 Score: 46.9802 bits (110), Expect = 3.885e-31 Identity = 22/42 (52.38%), Postives = 28/42 (66.67%), Query Frame = 2
Query: 278 FWK*TKLTSHQRTVHESVNPFQCQECGKFFATKRSLEMHQRT 403
FW + LT HQR+ H PF+C ECGK F+ K +L +HQRT
Sbjct: 365 FWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT 405 HSP 4 Score: 75.0998 bits (183), Expect = 1.048e-29 Identity = 38/81 (46.91%), Postives = 54/81 (66.67%), Query Frame = 1
Query: 424 AFRCQECGKSFAQNVDLTSHRRFFHEGIKAFECQEFGKCFIEKRNLNSQQRTVHEGVKPFRCQECGKCFAKKANLSLHQRT 666
F C ECGKSF++ +LT H+R H G K++EC GK F K +L ++ + +H G KP+ C ECGK F K++L++HQRT
Sbjct: 467 PFECLECGKSFSEKSNLTQHQRI-HIGDKSYECNACGKTFYHK-SLLTRHQIIHTGWKPYECYECGKTFCLKSDLTVHQRT 545 HSP 5 Score: 52.373 bits (124), Expect = 1.048e-29 Identity = 30/79 (37.97%), Postives = 44/79 (55.70%), Query Frame = 3
Query: 60 ISQEFFEADKIENPNIDAITNSLIKEHQRRIHDKPFKFNECVKFFTMKSNLKVHQRTVHEGIKPFLCQECSKSFGNKQN 296
Q+ F+ ++ E D ++L K + +KPF+ NEC K F+ KS L +HQRT H G KP+ C C K+F K +
Sbjct: 351 TGQKPFQCNECEKAFWDK--SNLTKHQRSHTGEKPFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSD 426 HSP 6 Score: 40.0466 bits (92), Expect = 1.048e-29 Identity = 20/42 (47.62%), Postives = 27/42 (64.29%), Query Frame = 2
Query: 278 FWK*TKLTSHQRTVHESVNPFQCQECGKFFATKRSLEMHQRT 403
F + + LT HQRT H + P++C ECGK F L++HQRT
Sbjct: 421 FCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRT 461 HSP 7 Score: 69.707 bits (169), Expect = 5.117e-27 Identity = 39/81 (48.15%), Postives = 47/81 (58.02%), Query Frame = 1
Query: 424 AFRCQECGKSFAQNVDLTSHRRFFHEGIKAFECQEFGKCFIEKRNLNSQQRTVHEGVKPFRCQECGKCFAKKANLSLHQRT 666
++ C CGK+F LT H + H G K +EC E GK F K +L QRT H G KPF C ECGK F+ K+ LS H RT
Sbjct: 495 SYECNACGKTFYHKSLLTRH-QIIHTGWKPYECYECGKTFCLKSDLTVHQRT-HTGQKPFACPECGKFFSHKSTLSQHYRT 573 HSP 8 Score: 51.6026 bits (122), Expect = 5.117e-27 Identity = 27/54 (50.00%), Postives = 34/54 (62.96%), Query Frame = 3
Query: 123 SLIKEHQR-RIHDKPFKFNECVKFFTMKSNLKVHQRTVHEGIKPFLCQECSKSF 281
S + HQR +KP++ N C K F KS+L HQRT H G+KP+ C EC KSF
Sbjct: 397 SALTLHQRTHTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSF 449 HSP 9 Score: 37.3502 bits (85), Expect = 5.117e-27 Identity = 19/38 (50.00%), Postives = 23/38 (60.53%), Query Frame = 2
Query: 296 LTSHQRTVHESVNPFQCQECGKFFATKRSLEMHQRTAL 409
L HQRT H PF+C ECGK F+ K +L HQR +
Sbjct: 455 LKVHQRT-HTGEKPFECLECGKSFSEKSNLTQHQRIHI 491 HSP 10 Score: 63.1586 bits (152), Expect = 1.201e-25 Identity = 36/80 (45.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query: 424 AFRCQECGKSFAQNVDLTSHRRFFHEGIKAFECQEFGKCFIEKRNLNSQQRTVHEGVKPFRCQECGKCFAKKANLSLHQR 663
+ C ECGK F LT H R H G K+ +C E GK F K L QR+ H G KP+ C C K F++K+NL +HQR
Sbjct: 691 PYECNECGKFFRHKSSLTVHHRA-HTGEKSCQCNECGKIFYRKSELAQHQRS-HTGEKPYECNTCRKTFSQKSNLIVHQR 768 HSP 11 Score: 47.7506 bits (112), Expect = 1.201e-25 Identity = 28/52 (53.85%), Postives = 30/52 (57.69%), Query Frame = 3
Query: 138 HQR-RIHDKPFKFNECVKFFTMKSNLKVHQRTVHEGIKPFLCQECSKSFGNK 290
HQR KPF EC KFF+ KS L H RT H G KP+ C EC K F NK
Sbjct: 542 HQRTHTGQKPFACPECGKFFSHKSTLSQHYRT-HTGEKPYECHECGKIFYNK 592 HSP 12 Score: 42.743 bits (99), Expect = 1.201e-25 Identity = 21/45 (46.67%), Postives = 30/45 (66.67%), Query Frame = 2
Query: 278 FWK*TKLTSHQRTVHESVNPFQCQECGKFFATKRSLEMHQRTALQ 412
F++ ++LT HQR +H P++C ECGK F K +L +HQRT Q
Sbjct: 617 FYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRTHTQ 660 HSP 13 Score: 73.1738 bits (178), Expect = 5.663e-23 Identity = 42/99 (42.42%), Postives = 53/99 (53.54%), Query Frame = 1
Query: 370 YKEKSGDAPKNCPSRYKSAFRCQECGKSFAQNVDLTSHRRFFHEGIKAFECQEFGKCFIEKRNLNSQQRTVHEGVKPFRCQECGKCFAKKANLSLHQRT 666
Y+ +G+ P + C ECGK F LT H R H G K +EC E GK F +K L QR +H G KP++C ECGK F K+ L +HQRT
Sbjct: 571 YRTHTGEKP----------YECHECGKIFYNKSYLTKHNRT-HTGEKPYECNECGKAFYQKSQLTQHQR-IHIGEKPYKCNECGKAFCHKSALIVHQRT 657 HSP 14 Score: 51.6026 bits (122), Expect = 5.663e-23 Identity = 31/58 (53.45%), Postives = 37/58 (63.79%), Query Frame = 3
Query: 123 SLIKEHQRRIHD--KPFKFNECVKFFTMKSNLKVHQRTVHEGIKPFLCQECSKSFGNK 290
SL+ HQ IH KP++ EC K F +KS+L VHQRT H G KPF C EC K F +K
Sbjct: 509 SLLTRHQI-IHTGWKPYECYECGKTFCLKSDLTVHQRT-HTGQKPFACPECGKFFSHK 564 HSP 15 Score: 72.4034 bits (176), Expect = 9.622e-21 Identity = 38/81 (46.91%), Postives = 50/81 (61.73%), Query Frame = 1
Query: 424 AFRCQECGKSFAQNVDLTSHRRFFHEGIKAFECQEFGKCFIEKRNLNSQQRTVHEGVKPFRCQECGKCFAKKANLSLHQRT 666
F C ECGK+F+ LT H+R H G K ++C GK F +K +L QRT H G+KP+ C ECGK F ++L +HQRT
Sbjct: 383 PFECNECGKAFSHKSALTLHQRT-HTGEKPYQCNACGKTFCQKSDLTKHQRT-HTGLKPYECYECGKSFRVTSHLKVHQRT 461 HSP 16 Score: 41.5874 bits (96), Expect = 9.622e-21 Identity = 22/42 (52.38%), Postives = 26/42 (61.90%), Query Frame = 2
Query: 278 FWK*TKLTSHQRTVHESVNPFQCQECGKFFATKRSLEMHQRT 403
FW+ + LT HQR VH PFQC EC K F K +L HQR+
Sbjct: 337 FWEKSHLTRHQR-VHTGQKPFQCNECEKAFWDKSNLTKHQRS 377 HSP 17 Score: 22.7126 bits (47), Expect = 9.622e-21 Identity = 18/70 (25.71%), Postives = 26/70 (37.14%), Query Frame = 3
Query: 156 DKPFKFNECVKFFTMKSNLK-------------------------VHQRTVHEGIKPFLCQECSKSFGNK 290
D ++F++C KF +KS L H + +G K F C EC K+F K
Sbjct: 271 DNHYEFSDCEKFLCVKSTLSKPHGVSMKHYDCGESGNNFRRKLCLSHLQKGDKGEKHFECNECGKAFWEK 340 HSP 18 Score: 78.9518 bits (193), Expect = 1.584e-16 Identity = 42/80 (52.50%), Postives = 51/80 (63.75%), Query Frame = 1
Query: 427 FRCQECGKSFAQNVDLTSHRRFFHEGIKAFECQEFGKCFIEKRNLNSQQRTVHEGVKPFRCQECGKCFAKKANLSLHQRT 666
F C ECGK+F + LT H+R H G K F+C E K F +K NL QR+ H G KPF C ECGK F+ K+ L+LHQRT
Sbjct: 328 FECNECGKAFWEKSHLTRHQRV-HTGQKPFQCNECEKAFWDKSNLTKHQRS-HTGEKPFECNECGKAFSHKSALTLHQRT 405 The following BLAST results are available for this feature:
BLAST of TCONS_00041781 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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