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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041775 ID=TCONS_00041775|Name=TCONS_00041775|organism=Clytia hemisphaerica|type=transcript|length=922bp
TGTTTAAGTGAGGCGGTGAATAGTTTAACATATGCATCTGTAATCTCTTC
AGCACATTCTTTAAGAAATCGAGCAGGTATATTGTCAGGTCCGCATGCTT
TACCGGGATCAATGTTTTTCAATAGTTTTTCGATTCCATTTCTTGTAAAG
TTAATATTGGCAATGTCTGAACCTTTGGGACCGTTGATTGTTGGAGTTAT
ACCATTGTCCTTGGAGAAAACACTGCAATAATGTTGATTGAGAAGTTGGG
CGATTTCACCATCATCTGAATGGGTTTGTCCATTTTTGTCAATGAGTGGT
GCAACTCCAGCAATATCATTTCGTTTAGATTTGATATATTTAAAAAGTTT
CTTTTTATTTCCTGTTACTGTCTCTTTAACGAAATTGTTTTTTGTGGTGT
TACAGATCTTTCTATAGTGTTTTGCTGCTAGTTGAAATTTCACCCAGTCT
TCATCTTTTTTTGTTCGCTTGTAAACTCTATACCATCTGATTTTCTGTCG
GTTAGCTNCTGCTAGTTGAAATTTCACCCAGTCTTCATCTTTTCTTGTTC
GCTTGTAAACTCTATACCGTCTGATTTTCTGTCGGTTAGCTCTTTTGCAT
ATTTGATTGAACCAGGGTTGATCAAAGCGTTTTTTTGTTGTGGTTGTTGG
GACATGGCGCTCTTGACATACTTTAACCATATTTTTTATACCGTTCCAGA
TTTCATTTACTGGGGTTTCGTCAGATGTTGTATTACAAAGGGTTCTGCAT
TTATCTCTAACGTCGTTgctggcagttagtcacactaggaaatctagctt
tcagtaaaaacaacatcagtcatctacaggatgtatttgcacaacaagga
tgagagttacctgaatcaagttcgcaagacaattaattaaaacttgaaag
tttgaaacaaaataaaacgtgc Run BLAST on NCBI protein sequence of TCONS_00041775-protein >TCONS_00041775-protein ID=TCONS_00041775-protein|Name=TCONS_00041775-protein|organism=Clytia hemisphaerica|type=polypeptide|length=226bp
MVKVCQERHVPTTTTKKRFDQPWFNQICKRANRQKIRRYRVYKRTRKDED
WVKFQLAXANRQKIRWYRVYKRTKKDEDWVKFQLAAKHYRKICNTTKNNF
VKETVTGNKKKLFKYIKSKRNDIAGVAPLIDKNGQTHSDDGEIAQLLNQH
YCSVFSKDNGITPTINGPKGSDIANINFTRNGIEKLLKNIDPGKACGPDN
IPARFLKECAEEITDAYVKLFTASLK Run BLAST on NCBI transcript from alignment at sc0003015:11355..12276 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041775 ID=TCONS_00041775|Name=TCONS_00041775|organism=Clytia hemisphaerica|type=transcript|length=922bp|location=Sequence derived from alignment at sc0003015:11355..12276 (Clytia hemisphaerica)
gcacgttttattttgtttcaaactttcaagttttaattaattgtcttgcg
aacttgattcaggtaactctcatccttgttgtgcaaatacatcctgtaga
tgactgatgttgtttttactgaaagctagatttcctagtgtgactaactg
ccagcAACGACGTTAGAGATAAATGCAGAACCCTTTGTAATACAACATCT
GACGAAACCCCAGTAAATGAAATCTGGAACGGTATAAAAAATATGGTTAA
AGTATGTCAAGAGCGCCATGTCCCAACAACCACAACAAAAAAACGCTTTG
ATCAACCCTGGTTCAATCAAATATGCAAAAGAGCTAACCGACAGAAAATC
AGACGGTATAGAGTTTACAAGCGAACAAGAAAAGATGAAGACTGGGTGAA
ATTTCAACTAGCAGNAGCTAACCGACAGAAAATCAGATGGTATAGAGTTT
ACAAGCGAACAAAAAAAGATGAAGACTGGGTGAAATTTCAACTAGCAGCA
AAACACTATAGAAAGATCTGTAACACCACAAAAAACAATTTCGTTAAAGA
GACAGTAACAGGAAATAAAAAGAAACTTTTTAAATATATCAAATCTAAAC
GAAATGATATTGCTGGAGTTGCACCACTCATTGACAAAAATGGACAAACC
CATTCAGATGATGGTGAAATCGCCCAACTTCTCAATCAACATTATTGCAG
TGTTTTCTCCAAGGACAATGGTATAACTCCAACAATCAACGGTCCCAAAG
GTTCAGACATTGCCAATATTAACTTTACAAGAAATGGAATCGAAAAACTA
TTGAAAAACATTGATCCCGGTAAAGCATGCGGACCTGACAATATACCTGC
TCGATTTCTTAAAGAATGTGCTGAAGAGATTACAGATGCATATGTTAAAC
TATTCACCGCCTCACTTAAACA Coding sequence (CDS) from alignment at sc0003015:11355..12276 >TCONS_00041775 ID=TCONS_00041775|Name=TCONS_00041775|organism=Clytia hemisphaerica|type=CDS|length=678bp|location=Sequence derived from alignment at sc0003015:11355..12276 (Clytia hemisphaerica)
ATGGTTAAAGTATGTCAAGAGCGCCATGTCCCAACAACCACAACAAAAAA
ACGCTTTGATCAACCCTGGTTCAATCAAATATGCAAAAGAGCTAACCGAC
AGAAAATCAGACGGTATAGAGTTTACAAGCGAACAAGAAAAGATGAAGAC
TGGGTGAAATTTCAACTAGCAGNAGCTAACCGACAGAAAATCAGATGGTA
TAGAGTTTACAAGCGAACAAAAAAAGATGAAGACTGGGTGAAATTTCAAC
TAGCAGCAAAACACTATAGAAAGATCTGTAACACCACAAAAAACAATTTC
GTTAAAGAGACAGTAACAGGAAATAAAAAGAAACTTTTTAAATATATCAA
ATCTAAACGAAATGATATTGCTGGAGTTGCACCACTCATTGACAAAAATG
GACAAACCCATTCAGATGATGGTGAAATCGCCCAACTTCTCAATCAACAT
TATTGCAGTGTTTTCTCCAAGGACAATGGTATAACTCCAACAATCAACGG
TCCCAAAGGTTCAGACATTGCCAATATTAACTTTACAAGAAATGGAATCG
AAAAACTATTGAAAAACATTGATCCCGGTAAAGCATGCGGACCTGACAAT
ATACCTGCTCGATTTCTTAAAGAATGTGCTGAAGAGATTACAGATGCATA
TGTTAAACTATTCACCGCCTCACTTAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041775-exon-sc0003015-1491911889:11355..12276 | TCONS_00041775-exon-sc0003015-1491911889:11355..12276 | Clytia hemisphaerica | exon |
| TCONS_00041775-exon-sc0003015-1510915933:11355..12276 | TCONS_00041775-exon-sc0003015-1510915933:11355..12276 | Clytia hemisphaerica | exon |
| TCONS_00041775-exon-sc0003015-1575043694:11355..12276 | TCONS_00041775-exon-sc0003015-1575043694:11355..12276 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0003015 | supercontig | sc0003015:11355..12276 . |
Blast
The following BLAST results are available for this feature:
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