TCONS_00041770 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041770
Unique NameTCONS_00041770
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length761

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041770 ID=TCONS_00041770|Name=TCONS_00041770|organism=Clytia hemisphaerica|type=transcript|length=761bp
TGTAGCGGCACATTCGTCTGCGTAGTTCCTTTTCAAAGTTGTAGACGTTT
TAAAAATAGGAGAATATGGATGAAATTCTGGCTTTTTTGAAAGGAAAGTT
GAAATACCTTCCAATTGGGCCACTGGAAAAGTTTCTTCCTAAAGAACACC
TTGGAAGGCACTCCAAAGAGTACCTGGTCGACAACTACGATGATTTAAGG
ATGATTAAATTGCAAGCCTCAAACATGGGGACCCATTGTCCTCCTCTTAC
AGTTCAACCTTTTACAACGCAGGAGTCACATGATATTTGGAACAGGAAAG
GTGCTGGCCTGGTCAATGTAGGGATCACAGAAGTACCAGTCGTGGTACAG
AATGTGATCCTAGATTATATGGAGGAAGATGTCCAAGAATATGAGCTCAT
TCTTTAAATCATATGATCCAGCAAACCAGCTAACCAGTGAACCGGATGAA
CAACACGATGTTACAAACCTGTTAGCTTTGATAAGTGACCTGGGTGGTGG
CAGCATACCAATGGATCAGAATATATTGAGACCAGCCAACAGGATCACAC
AAAGCATTAACGAAATATCGCACAGTGAACAGACGTTACCCAGTACTATA
AAAGCACCCGTTTGCAAAAAAGCACCCAGTTGCAAAAAAGCAACCAGTAG
CAGTACTAAAGAAACTTATGGCAAAATGGTGAGAAGTTTTACTTTAATAT
TCTAATCGATATAGTATTTGTAACTAAATGGACTTGGTTTccttttcaat
catttttatat
Run BLAST on NCBI

transcript from alignment at sc0003014:6411..14028+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041770 ID=TCONS_00041770|Name=TCONS_00041770|organism=Clytia hemisphaerica|type=transcript|length=7618bp|location=Sequence derived from alignment at sc0003014:6411..14028+ (Clytia hemisphaerica)
TGTAGCGGCACATTCGTCTGCGTAGTTCCTTTTCAAAGTTGTAGACGTTT
TAAAAATAGGAGAATATGGATGAAATTCTGGCTTTTTTGAAAGGAAAGGT
TAGTGTTAACACATTTCACACAAGCTAATATCTTCAATTACAGTATTCAG
TTTGTGTCTTTGTCCAAATCTTTccttctttaaaaagaaaataactgTCT
GCTCCCCCTCCCTTCTGTCAGTCTGTCCAGTAGTCAGTCTGGTGTGTGTG
CCCTTGCCCTTCTAagccatatttttttatatgttcaTATCTTCTGTATc
ttcaattaaaaatttaaaacacccccttcCTAATGTTGGAAGAATGTAAA
GCGTTATTGATATTTTGGAATTCTATTCTATGATTTTTTCATAGATTATT
GGTTAGTGTAATCATAATGCAATTCTGCCATTATTCATTTTGAATAGAAT
TCCACAATGTCATTATCActtaacattttttaataaatccTATCCATTAT
TTTGGctgttgacaacattagggctACTTACTGTAATCGATTCGACGATA
ATGCAATTCTGCCATTATTCGTTTTGAATAGAATTCCACAATGTCATTAT
CActtaacattttttaataaattctATCCAATATTTTGGctgttgacaac
attagggctACTTACTGTAATCGATTCAACGATCGAAACACCATCATACT
GTCTGTTGGTTTTGTTCGGTGTCAAAAGTTATTCCTCTGCTTTGGCCCTC
AACAAACATTTTTGTGTCTGGTGTGTGTCCGGTGTGAGAGATTTTGGAAC
TTTTATACACCAGACACTTCTGTTTCTATAAAATAATACCCACCGGACTT
TGTCCAATGGTGTCCGGTGTagtgattgtccggtggtaaaaagtaTTCAc
aactaaaaaaacaaaaagcatCAAAGAAATTTGatccataatggtggaat
cAGGTGGAATTGCTGATTTcagtcaatttttcttttatcttgGTGGTCCA
GTTTCAAATGAATTTTGGGAAACAGCGGCACTAAGCTATTTTGACAGTTT
TAATGCACCTGGAAATATAGCCTTTCTAATTTCGTTTCAGAAAAAATCCC
aggaacattttttttttatatttctggcaattttggctatttactttcCG
CTTTGTCGGTATTTTGACAGAATTCCCCTAGTAACGCCTTAGTTACGGGG
TATAAGAGCCTACTGAAAGCCTTTTCCAGTTGGCTATAAGCCGGATTGAA
GCCTTAAATAAAATTCTGAGCAATTTGGAAAATGTATAATCATCACATAG
GCCATATAGTTAAGGAGTTTCCCTCATTTCAGTCAATTTGGACTGGTTTA
CCCTAGCAACGCCTTAGTTACGAGGTATTTGAGTCTATTGGGAGCCGTTT
TAACTTGGTTTTGAGCTGAATTGAATCATAAAATGAGACTCTGAGCAACN
GGGATTTTCAATATGTGCTTAATTGAggctatttcaaaaaatgataaaat
tagcCTCAAAACtacacattttgataaaaaagaaattccagTGAATTTCT
AGAGTCCTAATCCTCAATCTTGTATTTTCCCCTCTCTCATGAAACATTTG
CTAAGAAGTTACAAGGCATTatccaaaatcaacaaaaattgcttttttcc
AATGTGTCANTTACAGGGTATATATAAAGCTTATCAATTTCCTTCACCAA
CATAATTTTTGAGCAAGTTTGAAgttgaatttgatgttttgaaCAATCTT
AATGTGTTTTGTCatcaaaaaacattaaaaataagGACCTAAAGTATAAT
AGAATTAACGTATAATAAATAGTAGAAAAGTCAGCACAATGAGGAGATTA
AGTATTGGTTGAAATCAGCAATTCTGCCATTATGgacataatttttttga
tgtttttttttgtttttttagttgCCTCATTGTGAGGACCTATCACTGTG
TCAAATATGGTGTAATTTCTATGATGCTAATGAGGAGATATTAAGGATTT
AAAAATTTGTGTATTTAACAGCCCATAACTGCTAAACTTTGGCTGTGAAT
TTTTCTTACCAAACCtagtctggagaccatactctgttacaaaaatattt
ctatcctgttaaaatcccaacaacttcaNGCCTATGATATatgtaaaaat
aagaaaaattcaagaCCCCCATGATTAAACTTTTGCCTTCTCAGGGTCTC
TCCTATATGCAATTGCTCTTAAGTGCTTTTAAATCCCATTCAAAACAACT
CATTCATTTTTAGTTGAAATACCTTCCAATTGGGCCACTGGAAAAGTTTC
TTCCTAAAGAACACCTTGGAAGGCACTCCAAAGAGTACCTGGTCGACAAC
TACGATGATTTAAGGATGATTAAATTGCAAGCCTCAAACATGGGGACCCA
TTGTCCTCCTCTTACAGTTCAACCTTTTACAACGCAGGAGTCACATGGTA
ATGAATCGTCTGAATTTTTGTTCTGTATTTTTCTTGCTCACTTTAGGCAG
TAGTCTCATGATTTCAATTGCCTCTATTTGATCAATCCCGAAAAGTAACT
GGTTGGCTCAGTGCCTAGTCAAAAAGTTCACACAAATCTTTTACATACAA
TCATTTAATCGTTTACATACAAATCTCTATTCATTTTTAAGAATAACGAT
GCCTCTGAATAGCTAATGTGTAGCCCAAACCATCCCTTTGTCCACTTTTT
CGGTACTTTACCTTACAGATATTTGGAACAGGAAAGGTGCTGGCCTGGTC
AATGTAGGGATCACAGAAGTACCAGTCGTGGTACAGAATGTGATCCTAGA
TTATATGGAGGAAGATGTCCAAGAATATGAGGTAAGAAATGTTGCCAACT
GTCTTTTCTAATTACTTATAAGTGGATGCAGGATAGGATTTCTGGAAACT
GAAACACCGGAATAAAATAGGCCGTTAACTgaaaaaccaaagaaatataG
GATCAACACAGTGATACTGAATTTCCATACACCCCCCCCACTTATGAGTT
AAAAAAGCTTTTTACCATACCATTTTGAGTTGCTAAAACGGTTGGTGTAA
TTATTcttgcatttttaaaggttagcGTAGATAGATAATTCAGCTGTTTT
CTGTTGAGGGGTTATTGTGGTTTCTTCTGGAAATAGAGTAAAATTTTTGG
AATAGGTAGAATTTTATctccttgttttttatttgtttggcTTAGATTAA
ATGATTAGATTTCGAAACTTCTCAAACTTCCCACAGTCGTTGTCTTGCAG
CTTTTATTATATATAGAATCTTTATTTCAGCCTAATTATTATGAATTTTT
GGATGAACAGAGAGAAGCAGAAGAAGAAAGAACAACAGGGGAAGAATGTG
AAGGCACTATGAACTTTGAGATGAACATGTTAGTACAGATTGTATTGTGC
TAGTCTGTAGTCAACCCTAGACTTGTATATTATGTGCTTGAATTTAGTAG
TCTATTTGTAGTAGCCTAAATTGAGAGTCACACTTGTTTAAATTTTACAG
TGTTTTAAGTTATCTATTCTACTTGCACAAAATTATATGCTAagcatttt
ttcttttaaaggtGTACTGCAGCTGATGGAAATTTTCTTAAAGATGATTT
GAGGTTAGGCTAATTTAGGCACAAAATAAGGATTGCTATTATACANCGTT
AACTgaaaaaccaaagaaatataGGATCAACACAGTGATACTGAATTTCC
ATACACCCCCCCCACTTATGAGTTAAAAAAGCTTTTTACCATACCATTTT
GAGTTGCTAAAACGGTTGGTGTAATTATTcttgcatttttaaaggttagc
GTAGATAGATAATTCAGCTGTTTTCTGTTGAGGGGTTATTGTGGTTTCTT
CTGGAAATAGAGTAAAATTTTTGGAATAGGTAGAATTTTATctccttgtt
ttttatttgtttggcTTAGATTAAATGATTAGATTTCGAAACTTCTCAAA
CTTCCCACAGTCGTTGTCTTGCAGCTTTTATTATATATAGAATCTTTATT
TCAGCCTAATTATTATGAATTTTTGGATGAACAGAGAGAAGCAGAAGAAG
AAAGAACAACAGGGGAAGAATGTGAAGGCACTATGAACTTTGAGATGAAC
ATGTTAGTACAGATTGTATTGTGCTAGTCTGTAGTCAACCCTAGACTTGT
ATATTATGTGCTTGAATTTAGTAGTCTATTTGTAGTAGCCTAAATTGAGA
GTCACACTTGTTTAAATTTTACAGTGTTTTAAGTTATCTATTCTACTTGC
ACAAAATTATATGCTAagcattttttcttttaaaggtGTACTGCAGCTGA
TGGAAATTTTCTTAAAGATGATTTGAGGTTAGGCTAATTTAGGCACAAAA
TAAGGATTGCTATTATACAATCTTaggaaattttattgaaagatGTCATT
AGAATAAGATTTACAGTGTATATTAAATAATCCATGCAGAATAGGGATTG
GTTACACATCTAGGTAAAGTGGAATTAGAGACCAAAGTGAAATATTGATC
CTGTTATACTTNTACACATCTAGGTAAAGTGGAATTGGAGACCAAAGTGA
AATATTGATCCTGTTATACTTTTGACTTCACCTAAAAAGTTTTGCAGCTG
CTGGGTCCTAATTAGCCTGAGGCTAATTCTAATTagctgatattttttgg
aaaagaatttGTAAAAATCATGAACTGCTTCACATGTCTATGCACAGGTA
TACAACAAGTAGGGTTGTGTATTTTAACCAAAGTTCACTTTACTTCACTT
CTGCTTACCATACGTCCTCTTATTCAAAATGGGAAATAATTAAAGAATTT
TGGTAAAATGACTCACTAAAGCCTTAGCATTTTGATTTTCTGTCCAGATT
CACCACATTTTATATTCTGAACCTTTACGTACTTTATTGCATGAAAATTT
TGTGGTCNGGGAAATAATTAAAGAATTTTGGTAAAATGACTCACTAAAGC
CTTAGCATTTTGATTTTCTGTCCAGATTCACCACATTTTATATTCTGAAC
CTTTACGTACTTTATTGCATGAAAATTTTGCGGTCATTTTAATTTTGCGG
TCCAAGAGAAACGTGTATTTTGCGGCATTTTGGTTTCGTAGGCCGATTTG
TACTTAAAAGACTagaaaaatacacaatttttatatattttagatACGTA
GtcaaaaaaacagattttttatGCTGACCATAAAATCGTTTTTCGCGGCA
TTTTAATTTCACAGTTTTTCTACCTCGACCACGAAACTGCAAAACTTTCA
TGCAACAAAGTAGTCCTCAGAatctgaaacatttttttcattaatgAAAC
CTCTTATTTTCTATTTCTCATAGCTCATTCTTTAAATCATATGATCCAGC
AAACCAGCTAACCAGTGAACCGGATGAACAACACGATGGGTAATTGTTTT
ATAGATTCTGTTTTTGAATATCTTCAGTATACATCTAAACCTTTACATAC
TTTATTGCATGAAAATTTTGCGGTCATTTTAATTTTGTGGTCCAAGAGAA
AAGTGTATTTTGCGGCATTTTGATTTCGTGGTTCCGAAGCAGTAAAAGGT
GAAAATAGGCCGATTTGTACTTAAAAGACTAGAAAAATACAcaactttta
tatattttaGATACGTAGTcgaaaaaacagattttttatGCTGACCATAA
AATCGTTTTTCGCGGCATTTTAATTTCACAGTTTTTCTACCTCAACCACG
AAACCGCGAAACTTTCATGCAATAAAGTAGTCCTCAGAatctgaaacatt
tttttcattaatgAAAACTCTTATTTTCTATTTCTCATAGCTCATTCTTT
AAATCATATGATCCAGCAAACCAGCTAACCAGTGAACCGGATGAACAACA
CGATGTGTAATTGTTTTATAGATTCTGTTTTTGAATATCTTAAGTATACA
TCTTATTGCTGcgtgtattttaatttttatttcttgatttctttaattta
aaagttcaaataaATCTATAATATATTTTCCATCTTTCAACCCTTGTATT
TAGCTGAGAAAAAATCTCAGAAACTGAAAGCCTCCACACAGGACTTTTTT
ATTCCCACCCGATTctaatttgtttttgaaaatatttccatcCCCAAGAC
TTTTAGAGACAGAAAAGTAGATTCATTTAAATGTAGCTTTTCACATcttt
caaaatcgaaaaaaaattaccatgGTGGTGGGTAACATTCAATTTGTTTC
CAAGTGTTCAATAAGCTATCGATTAACATATATCTACAGAACATTTAACA
CAAGAATGtccttgaaaatttcaacaCAGTGTCAAAAAATTCCGTTGAAa
gcatttttattcaattttggtctttatttgtcctatttttcaactaaaaa
aaattgtcctaTTTACTTAACTTGTAAGTACAAAAGTTGACTGGGAGCGG
AGATCCAAtgagaatttttcttttccaaatgTTGATCTAACTGTAGGGGA
AGTACCTATCCACCTTttaaaccaaccttttcaattGAGTACAGAGATGC
CTTTTcatggttttgtttttgtttatttataaaaattaaatttgtgtttt
gaattttcTAGTACAAACCTGTTAGCTTTGATAAGTGACCTGGGTGGTGG
CAGCATACCAATGGATCAGAATATATTGAGACCAGCCAACAGGTTAGATG
CTCATATTTTAAGTTAAAGAATTAGCTTAAAGGGCTGGTAGATATTCTTA
TTTACTACTTTTTGTGAGATGTGGAAAAAAACTATACAACTTTTCCTAAA
AGTTTTTTGTCCTATTTTTCAGCAATTCTCAGTTGGAATTTAGCTTAACA
GCACTTTTCAAATCTTAAACCTTCTTGCATCTAGGGTGGGTCAAACCCCT
CCacaaaactgaaatttttttgtccAATCGACTTGAAAATTTGCTAGTGT
ACACCaaatctaacttttttttttaaactttaatctCTTTGCCCCCAATT
TTGCATGTGGCGGCCATCaaaagaattattgattttCGGAACttgaggtc
ctataaattaaccgttgcccgtttgtttgtttgttcgttcgtttgtttgt
tcgtttatgagcttttcttatgagataaatgttttttgccaatgaaattg
tttctttacagaaaccAACCTTTTATCTTTACAGAAGATTTGAGTTtagg
tttgaaattttgagttgCTAAAATGTTTGCTCATAAATATGGAACTGGGC
CAAATTCTATATATATCTATAAGCAcattggaaaaaaacatttaactGGC
CTGAAAAGCTTtaattcattcaatttttttatacagGATCACACAAAGCA
TTAACGAAATATCGCACAGTNTAAATTAGCTATAAGCacattggaaaaaa
atatttaactgGCCTGAAAAGCTTtaattcattcaatttttttatacagG
ATCACACAAAGCATTAACGAAATATCGCACAGTGAACAGACGTTACCCAG
TACTATAAAAGCACCCGTTTGCAAAAAAGCACCCAGTTGCAAAAAAGCAA
CCAGTAGCAGTACTAAAGAAACTTATGGCAAAATGGTGAGAAGTTTTACT
TTAATATTCTAATCGATATAGTATTTGTAACTAAATGGACTTGGTTTcct
tttcaatcatttttatat
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025680XLOC_025680Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041770-exon-sc0003014-1491911889:6411..6508TCONS_00041770-exon-sc0003014-1491911889:6411..6508Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1510915933:6411..6508TCONS_00041770-exon-sc0003014-1510915933:6411..6508Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1575043694:6411..6508TCONS_00041770-exon-sc0003014-1575043694:6411..6508Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1491911889:8674..8857TCONS_00041770-exon-sc0003014-1491911889:8674..8857Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1510915933:8674..8857TCONS_00041770-exon-sc0003014-1510915933:8674..8857Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1575043694:8674..8857TCONS_00041770-exon-sc0003014-1575043694:8674..8857Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1491911889:9129..9241TCONS_00041770-exon-sc0003014-1491911889:9129..9241Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1510915933:9129..9241TCONS_00041770-exon-sc0003014-1510915933:9129..9241Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1575043694:9129..9241TCONS_00041770-exon-sc0003014-1575043694:9129..9241Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1491911889:12201..12266TCONS_00041770-exon-sc0003014-1491911889:12201..12266Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1510915933:12201..12266TCONS_00041770-exon-sc0003014-1510915933:12201..12266Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1575043694:12201..12266TCONS_00041770-exon-sc0003014-1575043694:12201..12266Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1491911889:12972..13052TCONS_00041770-exon-sc0003014-1491911889:12972..13052Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1510915933:12972..13052TCONS_00041770-exon-sc0003014-1510915933:12972..13052Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1575043694:12972..13052TCONS_00041770-exon-sc0003014-1575043694:12972..13052Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1491911889:13810..14028TCONS_00041770-exon-sc0003014-1491911889:13810..14028Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1510915933:13810..14028TCONS_00041770-exon-sc0003014-1510915933:13810..14028Clytia hemisphaericaexon
TCONS_00041770-exon-sc0003014-1575043694:13810..14028TCONS_00041770-exon-sc0003014-1575043694:13810..14028Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003014supercontigsc0003014:6411..14028 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	4.89902e-07	0.833925	0.280207	0.753886	3.30535	0.375978	1.22697e-09	0.430523	3.2846	1.27132	0	2.42824	1.97088	0	4.50879	0	0	0	0	1.14334e-08	0	0.000340955	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041770 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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