TCONS_00041764 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041764
Unique NameTCONS_00041764
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041764 ID=TCONS_00041764|Name=TCONS_00041764|organism=Clytia hemisphaerica|type=transcript|length=1663bp
TTTTCAGACAGTTTCATTCAGAAGACGAAGACAAAGTACAACAACACACG
AACACTTTACACCAGGATCGACCTCACAGACATCAGTGAAGAACTGAAAA
ATAATCCTCCTTATGAAATCACTGAAAAAGATCTGAATTCATCCGCAGCA
GGAGTTGGAGGTGGTGTCATCCAAAACTCCGTTTCAAATACCGCGAAAAA
TATCCTAAAAGCAACTTCAAATGGCAGTGCTACGCACATCCTGCCTCCAA
AATTCAAGATGGATGCGATGACAACGAGTAATTATGTGGCGGTGATGGTC
TGTTTACTGTGTGGTGTCATGAATATCGTTCGTTTGGTCCCATTCCTCTC
ACAAGTCGACATGGAGGATGAGacaCATTGGTTATCGATCAGTTTTGCGT
TTTTCACCTCAGCAATTATCAACTTCTTACAAGTAAGTTCCTCTCATATC
CAGCTTTTGTATATCTAGCACCCTGAATTCATATATCTCAAAATTGACCC
GAAAGTTTTTATCCCGGAGTATTTAATAGACCGATTCTGTCTGGCGCCAT
TTTCACCCACGATCCATACATGTCCAATATTATGGCCAATGTCCAATGGT
AACGATTTGTTCGAGAAAACTGTAAATGATTCCAAACCGAAATTAAGGAG
ATAACGGCAAGAGCTCTGCATAAATATAAGAGATAACTCTAGCTATTTAA
GAGATAAAAAATGACTTTATGTTACATTTACTATTATCCTAATACTATCA
TACTATCCTGTAATTTTTCCATATTATATATCCTTTATTCCTcctttttc
atctgtttccatGGTAACACATTTTCTATAGATGGCTTTCTAtagaaagt
ttttctttatggGAAAGGGAAGGATAtgtaaatattgaaatttgtGTAAA
TTGTATCGGCGCCAACCATTGGTTATCCATTTAATGTAAATGGTTCTATT
TGTAGACTAGAACGATAAAGCATATGTGATGTTCATGTATACACGTATAG
GGCTTAGGGGTATGTAAATGGTGACATTGGTGTAAATGGTGTAAATGGTT
CCAATGACAACCAATGGTAATTTGCTTGATGTAAATGGTGAAATAGTATT
TCAAAGAACGATAAATGATATGTATAGCTGTGTTGGTGTAAGGCTAGGGG
TATGTAAATGGTGACATTGGTGTAAATGGTGTAAATGGTTCCAATGACAA
CCAATGGTAATTTTCTTGATGTAAATGGTGTAAATGGTAGTGAAAACGAC
ATGAAAGTCAACCGTGCTTATTGCCACTCAAATGACGTCTTTTAGTTAAA
ATATTGATGTAATAATAAATTATAATGCCTGTCAAGTCAAAAATGCcaag
aaaataccaaaaatgtatTATGATGCAGAAGCTACAAAGAGATTTAAAAT
TACGTCAGTCGCACGTTTATAGACATCTGCGAGGGCTGTTTTAGAGACAT
GAAAGTTAATCGTGCTTATTGCCACTCAAATGGCGTCTTTTAGCCAAAAT
ATTGATGTAATAATAAATTACAATGCCTGTCAAGtcgaaaatgccaaaaa
aatacctaaaatgttTTATGATGCCGAAGCTACAAAGAGATTTAAAATTA
CGCCAGTCGCACGTTTATAGACATCTGCGAGGGCTGTTTTAGAGACCTGA
AAGTCAATCGTGC
Run BLAST on NCBI

protein sequence of TCONS_00041764-protein

>TCONS_00041764-protein ID=TCONS_00041764-protein|Name=TCONS_00041764-protein|organism=Clytia hemisphaerica|type=polypeptide|length=155bp
FSDSFIQKTKTKYNNTRTLYTRIDLTDISEELKNNPPYEITEKDLNSSAA
GVGGGVIQNSVSNTAKNILKATSNGSATHILPPKFKMDAMTTSNYVAVMV
CLLCGVMNIVRLVPFLSQVDMEDETHWLSISFAFFTSAIINFLQVSSSHI
QLLYI
Run BLAST on NCBI

transcript from alignment at sc0003013:10736..13474-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041764 ID=TCONS_00041764|Name=TCONS_00041764|organism=Clytia hemisphaerica|type=transcript|length=2739bp|location=Sequence derived from alignment at sc0003013:10736..13474- (Clytia hemisphaerica)
TTTTCAGACAGTTTCATTCAGAAGACGAAGACAAAGTACAACAACACACG
AACACTTTACACCAGGATCGACCTCACAGACATCAGTGAAGAACTGAAAA
ATAATCCTCCTTATGAAATCACTGAAAAAGATCTGAATTCATCCGCAGCA
GGAGTTGGAGGTGGTGTCATCCAAAACTCCGTTTCAAATACCGCGAAAAA
TATCCTAAAAGCAACTTCAAATGGCAGTGCTACGCACATCCTGCGTGAGT
TCTTCAAATAACTTTCATTAATCAGCGTATGTGCAGCATTTAGATTTCTT
TCCACTCGCTTACTACAATCAGGGTCGAAATATATTGGGAATTTTGGTTA
ATTCCTCGTTTTCAGCAATTTAAGTTCGGGCGAAAAAGTTGCTTTTGGAC
AAATTGATAAATTTTTTCGAATATTTTGATTTGGGAGGGGTTTTTATCCT
CCAGGCTATATTCTGAACCCTATTGGACCATTCTTGGACTTTTAGTTCTT
TAGTAATTAAGTCTAGCGTTAAAACTCAGAGTTAAAACTCCACCCGTCCA
ACCTAATTTAGAGCGCCTCCAAATCGTTTGTGGTTGTAAAATTTCGTGGA
AATGAAAGTGATAGCTCAAATTTTAAGTTAGGATATCTACTTTCTAAATA
TCAAAACTCCAAGCACTTTGGGACATTTGTTTGGCCTCAAGATGTCGGGA
AACGTCTGAACTTTTTCGTGGGTCACCCGGTGTTATCACAATCTGAAGAT
CTCGTTATCTCTTTTCACTTTTCAGCTCCAAAATTCAAGATGGATGCGAT
GACAACGAGTAATTATGTGGCGGTGATGGTCTGTTTACTGTGTGGTGTCA
TGAATATCGTTCGTTTGGTCCCATTCCTCTCACAAGTCGACATGGAGGAT
GAGGTCCGTCCCTTTTTTATCCTTTACACGCTTTTTTTATAAGAATACAC
TTTATAAGAATGTCCACGATGAAAATGGCCAAAAAATTAAGAATATGGTA
AGAATATCACCATCATGGAATTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNTTTTAATGCATTTTAACCTGTAGATTGCCAATTTCGATCTT
AACCTAAGAATACCGTAAGAATATTTTTGGATGATTTTCGTCAAAAAGTT
AAGAATATCCATGATGAAATGAAAAAACACCATTCTTATAAAAAAAAGCA
TGTATTCTAGGAAGTATCTCAGCTTGAAAATGTTTATTAGCGCATTTGCG
GAATTTTTGGCTCTTTTTTAACTGAAGAAAGATGAGGATGATGCTATTCT
TCTGACGAGGGAAATATTTAACATGTCTCTTCTTTTTTTTTTTTGCAGAC
ACATTGGTTATCGATCAGTTTTGCGTTTTTCACCTCAGCAATTATCAACT
TCTTACAAGTAAGTTCCTCTCATATCCAGCTTTTGTATATCTAGCACCCT
GAATTCATATATCTCAAAATTGACCCGAAAGTTTTTATCCCGGAGTATTT
AATAGACCGATTCTGTCTGGCGCCATTTTCACCCACGATCCATACATGTC
CAATATTATGGCCAATGTCCAATGGTAACGATTTGTTCGAGAAAACTGTA
AATGATTCCAAACCGAAATTAAGGAGATAACGGCAAGAGCTCTGCATAAA
TATAAGAGATAACTCTAGCTATTTAAGAGATAAAAAATGACTTTATGTTA
CATTTACTATTATCCTAATACTATCATACTATCCTGTAATTTTTCCATAT
TATATATCCTTTATTCCTCCTTTTTCATCTGTTTCCATGGTAACACATTT
TCTATAGATGGCTTTCTATAGAAAGTTTTTCTTTATGGGAAAGGGAAGGA
TATGTAAATATTGAAATTTGTGTAAATTGTATCGGCGCCAACCATTGGTT
ATCCATTTAATGTAAATGGTTCTATTTGTAGACTAGAACGATAAAGCATA
TGTGATGTTCATGTATACACGTATAGGGCTTAGGGGTATGTAAATGGTGA
CATTGGTGTAAATGGTGTAAATGGTTCCAATGACAACCAATGGTAATTTG
CTTGATGTAAATGGTGAAATAGTATTTCAAAGAACGATAAATGATATGTA
TAGCTGTGTTGGTGTAAGGCTAGGGGTATGTAAATGGTGACATTGGTGTA
AATGGTGTAAATGGTTCCAATGACAACCAATGGTAATTTTCTTGATGTAA
ATGGTGTAAATGGTAGTGAAAACGACATGAAAGTCAACCGTGCTTATTGC
CACTCAAATGACGTCTTTTAGTTAAAATATTGATGTAATAATAAATTATA
ATGCCTGTCAAGTCAAAAATGCCAAGAAAATACCAAAAATGTATTATGAT
GCAGAAGCTACAAAGAGATTTAAAATTACGTCAGTCGCACGTTTATAGAC
ATCTGCGAGGGCTGTTTTAGAGACATGAAAGTTAATCGTGCTTATTGCCA
CTCAAATGGCGTCTTTTAGCCAAAATATTGATGTAATAATAAATTACAAT
GCCTGTCAAGTCGAAAATGCCAAAAAAATACCTAAAATGTTTTATGATGC
CGAAGCTACAAAGAGATTTAAAATTACGCCAGTCGCACGTTTATAGACAT
CTGCGAGGGCTGTTTTAGAGACCTGAAAGTCAATCGTGC

Coding sequence (CDS) from alignment at sc0003013:10736..13474-

>TCONS_00041764 ID=TCONS_00041764|Name=TCONS_00041764|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0003013:10736..13474- (Clytia hemisphaerica)
ACACATTGGTTATCGATCAGTTTTGCGTTTTTCACCTCAGCAATTATCAA
CTTCTTACAAGTAAGTTCCTCTCATATCCAGCTTTTGTATATCTAGCTCC
AAAATTCAAGATGGATGCGATGACAACGAGTAATTATGTGGCGGTGATGG
TCTGTTTACTGTGTGGTGTCATGAATATCGTTCGTTTGGTCCCATTCCTC
TCACAAGTCGACATGGAGGATGAGTTTTCAGACAGTTTCATTCAGAAGAC
GAAGACAAAGTACAACAACACACGAACACTTTACACCAGGATCGACCTCA
CAGACATCAGTGAAGAACTGAAAAATAATCCTCCTTATGAAATCACTGAA
AAAGATCTGAATTCATCCGCAGCAGGAGTTGGAGGTGGTGTCATCCAAAA
CTCCGTTTCAAATACCGCGAAAAATATCCTAAAAGCAACTTCAAATGGCA
GTGCTACGCACATCCTGCACACATTGGTTATCGATCAGTTTTGCGTTTTT
CACCTCAGCAATTATCAACTTCTTACAAGTAAGTTCCTCTCATATCCAGC
TTTTGTATATCTAGCTCCAAAATTCAAGATGGATGCGATGACAACGAGTA
ATTATGTGGCGGTGATGGTCTGTTTACTGTGTGGTGTCATGAATATCGTT
CGTTTGGTCCCATTCCTCTCACAAGTCGACATGGAGGATGAGTTTTCAGA
CAGTTTCATTCAGAAGACGAAGACAAAGTACAACAACACACGAACACTTT
ACACCAGGATCGACCTCACAGACATCAGTGAAGAACTGAAAAATAATCCT
CCTTATGAAATCACTGAAAAAGATCTGAATTCATCCGCAGCAGGAGTTGG
AGGTGGTGTCATCCAAAACTCCGTTTCAAATACCGCGAAAAATATCCTAA
AAGCAACTTCAAATGGCAGTGCTACGCACATCCTGCACACATTGGTTATC
GATCAGTTTTGCGTTTTTCACCTCAGCAATTATCAACTTCTTACAAGTAA
GTTCCTCTCATATCCAGCTTTTGTATATCTAGCTCCAAAATTCAAGATGG
ATGCGATGACAACGAGTAATTATGTGGCGGTGATGGTCTGTTTACTGTGT
GGTGTCATGAATATCGTTCGTTTGGTCCCATTCCTCTCACAAGTCGACAT
GGAGGATGAGTTTTCAGACAGTTTCATTCAGAAGACGAAGACAAAGTACA
ACAACACACGAACACTTTACACCAGGATCGACCTCACAGACATCAGTGAA
GAACTGAAAAATAATCCTCCTTATGAAATCACTGAAAAAGATCTGAATTC
ATCCGCAGCAGGAGTTGGAGGTGGTGTCATCCAAAACTCCGTTTCAAATA
CCGCGAAAAATATCCTAAAAGCAACTTCAAATGGCAGTGCTACGCACATC
CTGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025676XLOC_025676Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041764-proteinTCONS_00041764-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041764-exon-sc0003013-1575043694:13231..13474TCONS_00041764-exon-sc0003013-1575043694:13231..13474Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1575043694:12572..12699TCONS_00041764-exon-sc0003013-1575043694:12572..12699Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1575043694:10736..12026TCONS_00041764-exon-sc0003013-1575043694:10736..12026Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1510915933:13231..13474TCONS_00041764-exon-sc0003013-1510915933:13231..13474Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1510915933:12572..12699TCONS_00041764-exon-sc0003013-1510915933:12572..12699Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1510915933:10736..12026TCONS_00041764-exon-sc0003013-1510915933:10736..12026Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1491911889:13231..13474TCONS_00041764-exon-sc0003013-1491911889:13231..13474Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1491911889:12572..12699TCONS_00041764-exon-sc0003013-1491911889:12572..12699Clytia hemisphaericaexon
TCONS_00041764-exon-sc0003013-1491911889:10736..12026TCONS_00041764-exon-sc0003013-1491911889:10736..12026Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0003013supercontigsc0003013:10736..13474 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
6.73238	6.82965	2.59124	3.51125	1.39249	0.972043	5.72156	7.04142	3.79803	4.12574	3.05117	3.30902	2.45414	2.39352	0.660114	0.364542	0.607455	0.905441	0.785666	0.822602	1.24226	0.831962	2.16478	0.689904	3.58897	2.9839	0.59331	0.44519	1.56389	1.97321
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041764 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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