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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041732 ID=TCONS_00041732|Name=TCONS_00041732|organism=Clytia hemisphaerica|type=transcript|length=1770bp
ATTGACAAGTGGTTAACACTTTGTGGTTTCATTGTTCTCTTGATCCGATA
TATTTCCGATCTTTGCGCAGACTCGATCTTCCGACGCTTTCATTTAGACG
AGAGCGTAACGACATGATTGAAATATACAAACATTTCAATGTCTACGATA
GATCTTCACTACACAAAACCTTTCAGCACCAGATGCGTGTCACAAGGAAC
CATGAACACGAGCTTCAACTCGTTGAGCGAATCCCAAAAGATGGTGTGAG
AGGTGCACAGTTCAATTCATTTTATTACCGAACAATCAATCCTTGGAATA
ATCTACCAGCCGACGTCGTCAAATCCGAAACCATGTTCCAATTCAGGGTT
AACCTGGACGAAGCATGGAAAGAAAGACCGCAAAGACTCCAGCAACCAAA
CGGGATAGAAGAGACCTTTGGAATTCCGGACTTAACATAACGAGTTTTTT
CTAAGCAACTTTATTGTATATCCTTTCGGAGAGACAGAAATGCCTGCGAA
GGGGAACTCATTAACATACATACATAAATCATCCACTTGAAAGTGATGAC
ATGACCATGTCTTTCCATCTGACCCTGTTGTGCGCCAAACGAACCATCTC
ACCTTTGTCAAGTCCAGCCTCTTGTTCTAAGACTTTGAGTAGTGTCTTGT
GTGGACGACCTCTCTTCTTTGTGAAGAATGTTGCCTGCCAAAGGAGAAGT
TTGGATGCCGGCTCATTTCCTCTTATGACGTGACCTGCTAACTGCAATCT
TCTTTTCTGGATAAGACTGCTCAATTGGTGCAGCTTGCTTTACAACACTT
TGTTGTTATGTGGACATTAGGCTGgatgttttttacttttctcaGGATTC
TCGTAAACGCTCCGTCTAATTTCTTTGTCAGAGTAGACGTTAGTAACCAT
GATTCACAGGAGTGAAATCTCTATGTCATAGTTAGAGTTTGTGTAAGCTC
CAAGGTATTTGAAATCGTCAACCTTTTCTAGGGCGATACCATTAACAGAT
TGGATGCAATCGTTTGTTGTAGGGCTGATATGCATATATTTGGTTTTCTT
AGCGTTGAGAGAGAGGCCGATAGATTGAGTTGATATCTCTAGCTTGTGTA
GGAGGTTTTCAGCTTCGACTACTGTTTCATTTAGAAGAGATATATCGTCT
GCAAAGTCAAGATCTGCTAATTTCTCGGTATGATGTCGTCTACTTCTGCG
TTTTTCAATAGTGAATCCATCCTCAGAAGTAATGGCTGTCCTCAGAGCAT
AATCGAGCACAATAATAAAGAGGTAAGGTGCTAATGGATCACCTTGAAGC
ACAGCAGTTACGacatcaaagaattctgtttctCCTTCTGATTTTGAACA
TTGACTCTCTGTTAACACTATCAAACGCCTTTTTAAAGTCGATGAATGTT
AATAACTTTATGGTTGTCAACTTCCTCTACAAGACTCCGAAGGGCAAGAA
CTNCAGCTTCAACTTTATGGTTGTCAACTTCTTCTACAAGACGCCGAAGG
GCAAGAACTTGTGATGATGTCGATCGGGACGGACGAAAACCATTTGATTG
AAACGAAGCTTTTGATCAATCTCAGGGCGAATTCTGTTTAATATTAGTCT
ATTGTAAAGTTTGGCAGCAACTTGAGTTGGACTAATACCTCGATAGTTAT
CAACTTTTATTAAATCACCCTTTTTGGGCACAGGTACAATACAGGATAGG
CCCCATTCATCTGGGCGCTCACCGTTTAAGGTTGCATTGCAGAAGTGTAA
AAGAACAGTACTGAGAGAAT Run BLAST on NCBI protein sequence of TCONS_00041732-protein >TCONS_00041732-protein ID=TCONS_00041732-protein|Name=TCONS_00041732-protein|organism=Clytia hemisphaerica|type=polypeptide|length=108bp
MIEIYKHFNVYDRSSLHKTFQHQMRVTRNHEHELQLVERIPKDGVRGAQF
NSFYYRTINPWNNLPADVVKSETMFQFRVNLDEAWKERPQRLQQPNGIEE
TFGIPDLT Run BLAST on NCBI transcript from alignment at sc0002992:2703..4472 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041732 ID=TCONS_00041732|Name=TCONS_00041732|organism=Clytia hemisphaerica|type=transcript|length=1770bp|location=Sequence derived from alignment at sc0002992:2703..4472 (Clytia hemisphaerica)
ATTCTCTCAGTACTGTTCTTTTACACTTCTGCAATGCAACCTTAAACGGT
GAGCGCCCAGATGAATGGGGCCTATCCTGTATTGTACCTGTGCCCAAAAA
GGGTGATTTAATAAAAGTTGATAACTATCGAGGTATTAGTCCAACTCAAG
TTGCTGCCAAACTTTACAATAGACTAATATTAAACAGAATTCGCCCTGAG
ATTGATCAAAAGCTTCGTTTCAATCAAATGGTTTTCGTCCGTCCCGATCG
ACATCATCACAAGTTCTTGCCCTTCGGCGTCTTGTAGAAGAAGTTGACAA
CCATAAAGTTGAAGCTGNAGTTCTTGCCCTTCGGAGTCTTGTAGAGGAAG
TTGACAACCATAAAGTTATTAACATTCATCGACTTTAAAAAGGCGTTTGA
TAGTGTTAACAGAGAGTCAATGTTCAAAATCAGAAGGagaaacagaattc
tttgatgtCGTAACTGCTGTGCTTCAAGGTGATCCATTAGCACCTTACCT
CTTTATTATTGTGCTCGATTATGCTCTGAGGACAGCCATTACTTCTGAGG
ATGGATTCACTATTGAAAAACGCAGAAGTAGACGACATCATACCGAGAAA
TTAGCAGATCTTGACTTTGCAGACGATATATCTCTTCTAAATGAAACAGT
AGTCGAAGCTGAAAACCTCCTACACAAGCTAGAGATATCAACTCAATCTA
TCGGCCTCTCTCTCAACGCTAAGAAAACCAAATATATGCATATCAGCCCT
ACAACAAACGATTGCATCCAATCTGTTAATGGTATCGCCCTAGAAAAGGT
TGACGATTTCAAATACCTTGGAGCTTACACAAACTCTAACTATGACATAG
AGATTTCACTCCTGTGAATCATGGTTACTAACGTCTACTCTGACAAAGAA
ATTAGACGGAGCGTTTACGAGAATCCtgagaaaagtaaaaaacatcCAGC
CTAATGTCCACATAACAACAAAGTGTTGTAAAGCAAGCTGCACCAATTGA
GCAGTCTTATCCAGAAAAGAAGATTGCAGTTAGCAGGTCACGTCATAAGA
GGAAATGAGCCGGCATCCAAACTTCTCCTTTGGCAGGCAACATTCTTCAC
AAAGAAGAGAGGTCGTCCACACAAGACACTACTCAAAGTCTTAGAACAAG
AGGCTGGACTTGACAAAGGTGAGATGGTTCGTTTGGCGCACAACAGGGTC
AGATGGAAAGACATGGTCATGTCATCACTTTCAAGTGGATGATTTATGTA
TGTATGTTAATGAGTTCCCCTTCGCAGGCATTTCTGTCTCTCCGAAAGGA
TATACAATAAAGTTGCTTAGAAAAAACTCGTTATGTTAAGTCCGGAATTC
CAAAGGTCTCTTCTATCCCGTTTGGTTGCTGGAGTCTTTGCGGTCTTTCT
TTCCATGCTTCGTCCAGGTTAACCCTGAATTGGAACATGGTTTCGGATTT
GACGACGTCGGCTGGTAGATTATTCCAAGGATTGATTGTTCGGTAATAAA
ATGAATTGAACTGTGCACCTCTCACACCATCTTTTGGGATTCGCTCAACG
AGTTGAAGCTCGTGTTCATGGTTCCTTGTGACACGCATCTGGTGCTGAAA
GGTTTTGTGTAGTGAAGATCTATCGTAGACATTGAAATGTTTGTATATTT
CAATCATGTCGTTACGCTCTCGTCTAAATGAAAGCGTCGGAAGATCGAGT
CTGCGCAAAGATCGGAAATATATCGGATCAAGAGAACAATGAAACCACAA
AGTGTTAACCACTTGTCAAT Coding sequence (CDS) from alignment at sc0002992:2703..4472 >TCONS_00041732 ID=TCONS_00041732|Name=TCONS_00041732|organism=Clytia hemisphaerica|type=CDS|length=327bp|location=Sequence derived from alignment at sc0002992:2703..4472 (Clytia hemisphaerica)
TTATGTTAAGTCCGGAATTCCAAAGGTCTCTTCTATCCCGTTTGGTTGCT
GGAGTCTTTGCGGTCTTTCTTTCCATGCTTCGTCCAGGTTAACCCTGAAT
TGGAACATGGTTTCGGATTTGACGACGTCGGCTGGTAGATTATTCCAAGG
ATTGATTGTTCGGTAATAAAATGAATTGAACTGTGCACCTCTCACACCAT
CTTTTGGGATTCGCTCAACGAGTTGAAGCTCGTGTTCATGGTTCCTTGTG
ACACGCATCTGGTGCTGAAAGGTTTTGTGTAGTGAAGATCTATCGTAGAC
ATTGAAATGTTTGTATATTTCAATCAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041732-exon-sc0002992-1491911889:2703..4472 | TCONS_00041732-exon-sc0002992-1491911889:2703..4472 | Clytia hemisphaerica | exon |
| TCONS_00041732-exon-sc0002992-1510915933:2703..4472 | TCONS_00041732-exon-sc0002992-1510915933:2703..4472 | Clytia hemisphaerica | exon |
| TCONS_00041732-exon-sc0002992-1575043694:2703..4472 | TCONS_00041732-exon-sc0002992-1575043694:2703..4472 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002992 | supercontig | sc0002992:2703..4472 . |
Blast
The following BLAST results are available for this feature:
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