TCONS_00041717 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041717
Unique NameTCONS_00041717
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041717 ID=TCONS_00041717|Name=TCONS_00041717|organism=Clytia hemisphaerica|type=transcript|length=334bp
TTTGTCGaattatttgtttacatttattaTTTTCCCGCGGAAATTTGTAA
CGTAGATCGTAACAAGAAATTGGCGAGACGGCAACGCCGAGGCGACGGCC
CCTAATAAAGTTGCCGTCGGCCCTGCCGTTGTTGAATCGTAAACTCTCTA
ATAAACATCCCTTTAACATTTGGATTAAACCTAAAGTAAATGTTCAAGCT
CTTGCCAACCGTTACGGCTCTTCGTCGTTCGTAATGGAAGTTACCGATAG
TGATGAtgtcaaaattgttaaaaacagGGTGGCGGCAGCAGCTTTTAACC
GGGAAGAAGACGACAATTATTGTTTTATTGATTT
Run BLAST on NCBI

transcript from alignment at sc0002983:7364..7697

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041717 ID=TCONS_00041717|Name=TCONS_00041717|organism=Clytia hemisphaerica|type=transcript|length=334bp|location=Sequence derived from alignment at sc0002983:7364..7697 (Clytia hemisphaerica)
AAATCAATAAAACAATAATTGTCGTCTTCTTCCCGGTTAAAAGCTGCTGC
CGCCACCctgtttttaacaattttgacaTCATCACTATCGGTAACTTCCA
TTACGAACGACGAAGAGCCGTAACGGTTGGCAAGAGCTTGAACATTTACT
TTAGGTTTAATCCAAATGTTAAAGGGATGTTTATTAGAGAGTTTACGATT
CAACAACGGCAGGGCCGACGGCAACTTTATTAGGGGCCGTCGCCTCGGCG
TTGCCGTCTCGCCAATTTCTTGTTACGATCTACGTTACAAATTTCCGCGG
GAAAAtaataaatgtaaacaaataattCGACAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025637XLOC_025637Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041717-exon-sc0002983-1491911889:7364..7697TCONS_00041717-exon-sc0002983-1491911889:7364..7697Clytia hemisphaericaexon
TCONS_00041717-exon-sc0002983-1510915933:7364..7697TCONS_00041717-exon-sc0002983-1510915933:7364..7697Clytia hemisphaericaexon
TCONS_00041717-exon-sc0002983-1575043694:7364..7697TCONS_00041717-exon-sc0002983-1575043694:7364..7697Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002983supercontigsc0002983:7364..7697 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.7029	0.341292	0.821516	0.628786	9.18583	4.23428	1.45957	1.70804	0.239167	0.888741	2.30036	0.378041	0.566273	0.691182	0.908892	1.90245	0	1.44006	0.301704	0.315711	0.925526	0.401543	2.12826	1.10297	5.48499	2.62565	1.55668	0.415332	1.75972	2.14064
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041717 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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