TCONS_00041712 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041712
Unique NameTCONS_00041712
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3114

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041712 ID=TCONS_00041712|Name=TCONS_00041712|organism=Clytia hemisphaerica|type=transcript|length=3114bp
ATGGGTTTCATTCCCTAACCAGGTTACAACATAGACTTCATACTTAGAAC
AAAATGGCACTGCtggatgctcagcaattaagggaaggatcaggggtaag
tggagaaatctagGGAAAAAGAGTGGCAATCTTTGGGTTGACTCAGACTT
TATTTGAAGTTCTAAGGGATTGCAATTTACTTTGATATAACAAAGAATTC
TAAtctttgaaagcatttttttctCACCAAATTTAACTCCAACCTATTCT
CGGCGGAAAAAGTTCAAAACTTGATAGAActaaataataattttcagact
ttttttaaTTAAGCCATGGCAAAAAACTTAATTGAGTACTATAAAATTAA
TTGAGCAAAGTTACGTTCCTATTTTAAAATGTTACAGAAGCAGACAGAAG
CAGTGATGCGAGACTAAAACTATTAAAAGcaggaaaataaaagaattctA
TCGAGAATATAATAAATGAAAGGTTAAGCGATTTAAAACACAGTGCTTAG
CTATAAAAAGTCTATAAGTACAGTGAAAGCAACAATGCCTTTTGGAATTA
AATAATTCTGGccagaaaaaagataaatggATACAAACTGATAATTGAAA
ATTGAGACAAGATTCTGATTGGAGGCACAATGAATACAAAAAATTAATGC
CTATATCCCCTTTTGTTCTATTTaggaaaaaaagcaaaataaaagtcatt
atCAAACGTAAAACGAAAATACCTGGTAGAGGACAAAACTGTTTGTAACA
CTgaatattttctctttattttacAGTTCTGAATGATTAAGTTCAAATGG
AAGAACAAGCAATAGCAGTTGCTAAGTATGATTACACAGCGGAAGGTCAA
GGTGAGCTAAGTAtccgaaaaaatgaaaaattaactgtAATTGATGACAC
TCAACTTTGGTGGAAAGTTCAAAATGAGAAGTCAGTATCAGGCTATGTTC
CCTCAAACTACTTGGCAAGAAAAGATTCAGTGAAGGGAAAGAAAAATATC
GTGAAAACAATaaaggaaaaattaaatacaaaaAAGACTAATGAAGTTGA
ATCACCTCAGGCTGATTTGCAGTCTCCTAAACTAAAGGGTGGAGGAAAGG
TGTTGATGGTGGGTACTGCTAAATTTAAATACATTCCCCAGAGAGATGAC
GAGATTGAACTTAGTAAAGGTGATACTGTTATGATATTAGAAATGGAGCA
TGACGGTTGGTGTCGTGGGGAAAGTAATGGTAAAGTTGGATGGCTTCCCT
TTAATTATCTTCAAAAGAGTGAACCTCAGGGTGAACAAGCATCTCCATCT
GAATATGCCGACCCGAATGATGTTATGGATAAGCAAATCATTTGTAAAGT
TAGAACATTGTACCCATTCAACTCTCAATCGTCAGAAGaactttcttttg
aaaaagactCTATATTAGAAATAGTTGACAAGCCTAAGGATGACCCGGAC
TGGTGGCAAGCAAGGAAATCTAGTGGAGAAATTGGTCTCGTTCCTAGAAA
TTATGTTGATGAAATTGTCTCTCCTGTTTTGACACCTGGCCCAGTAAAAC
CAAAACAAGGTAGCAATTTTCCAGCATTGTCCTCTTCTCCAGCTAAAGCT
CCTCCTAGAGATTTGGATGTTAATGGAAAATTCAATGACCGCCCTTGGTA
CCATGGATCATTGAAAAGACAGGAATGCGAAAATGTTTTGCGCACTCACG
GTGAAGATGGCCAATATCTTGTCAGGAATAGTGAAAGCAAAcCTGGTGAC
TTTTCACTTTCGATGAAAGCACCTGATCGCATGAAGCATTTCAAGATTAC
GCACACAGAAGATCAATATGTTATAGGTCAACGTTCCTTTGATAGCATGG
ACAGTTTAATCAGCCATTATGAAAAGGCTCCTATTTACACAACAGAGGCT
GGCCAAAAAATGTATCTTACTCAACCAATGAGTAAATCGCTTACGAGAAA
CGGCTATTCTTGAATCATGCTAAATGATATGTATAAATTAGTTATTGGTA
TCAAAGTGTACTCAATTATGAAGTTTGTAGCCTCTTTAGCTTCTGGCTGG
TCAAATGTCGAGATTTTCGAATGTTGCTGAATGTGAATATACGTAATAGA
AAGAAAGCATTCGAGTAAACAGTACCAAGAACTGTCACGAGCAGGAATCT
TTCTGTATGGAAAAACCCTGGAAACACTGTAGGATACCTCATGTCGCCAG
ACTGGATGCAATTCAAAATAGTTTTGTTATTAATCAGATTTTAtcattat
tactattattaatTTCTATTCTTTTACGTAAACAAAATCTTactttattt
taaatattttttcagtgACAGTGAACTTCCAAAAACGAATCAATCTGACG
AGATTTTGTCAATCAATTTGTTaagttttcagttttgttaTCATTGATGT
GAATTGTCACTGCAATATCCGCGTTTAGGTGACTTGCTTTTTGGATATGC
TGATaggttgaaaacaaaaactctATGTAAAGCATCACTCGAGTAAATTG
CCGGAGCAAAGGACAAAGCCTTTTTTTAGCTTGTAGTTGTATTGTTAAAG
AAGTGGAGTAagtttattattattgttattgttgttattattCCTTTATT
AATAATGTATTACTATGAatgtttgatgatttttaatttcacttttttta
cttAATCTAAATTAATTGATATTGAATCGTTTGCTTTCAATGTCTCctct
aaagatttttcaaagtttctaAACAATGAACATTCTCCGAATAAAttatc
tttgaaattttcaaaagtaaaacacATAATATAGAATTTGAGTGAAGTGT
AAAATTgacaatgaattttttttaattaggaAGAACTAAGTGTCACTTTC
TCTGTCCTGATATTGTAGAAATATCCAGAAAAAATACTTAACTCAACAGG
AAGTTCATGGGCTTTACAAGAATCCCAATACTTACCTCTCTTTTTGTATA
GATTTTTTACAAACCATTTTTCTTTCAGTGTACTATAGATCAGGTTTTCT
ATGCTCGTATTTGAAGCATGTAAATTTTCCTTTTGGGGATCTTAACCCTT
AGGAGGCGAaagacgtatatatacgttttgaaaaggtcattttaccgctT
GAGATTCAGAGANN
Run BLAST on NCBI

protein sequence of TCONS_00041712-protein

>TCONS_00041712-protein ID=TCONS_00041712-protein|Name=TCONS_00041712-protein|organism=Clytia hemisphaerica|type=polypeptide|length=388bp
MEEQAIAVAKYDYTAEGQGELSIRKNEKLTVIDDTQLWWKVQNEKSVSGY
VPSNYLARKDSVKGKKNIVKTIKEKLNTKKTNEVESPQADLQSPKLKGGG
KVLMVGTAKFKYIPQRDDEIELSKGDTVMILEMEHDGWCRGESNGKVGWL
PFNYLQKSEPQGEQASPSEYADPNDVMDKQIICKVRTLYPFNSQSSEELS
FEKDSILEIVDKPKDDPDWWQARKSSGEIGLVPRNYVDEIVSPVLTPGPV
KPKQGSNFPALSSSPAKAPPRDLDVNGKFNDRPWYHGSLKRQECENVLRT
HGEDGQYLVRNSESKPGDFSLSMKAPDRMKHFKITHTEDQYVIGQRSFDS
MDSLISHYEKAPIYTTEAGQKMYLTQPMSKSLTRNGYS
Run BLAST on NCBI

transcript from alignment at sc0002982:3429..10418-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041712 ID=TCONS_00041712|Name=TCONS_00041712|organism=Clytia hemisphaerica|type=transcript|length=6990bp|location=Sequence derived from alignment at sc0002982:3429..10418- (Clytia hemisphaerica)
ATGGGTTTCATTCCCTAACCAGGTTACAACATAGACTTCATACTTAGAAC
AAAATGGCACTGCTGGATGCTCAGCAATTAAGGGAAGGATCAGGGGTAAG
TGGAGAAATCTAGGGAAAAAGAGTGGCAATCTTTGGGTTGACTCAGACTT
TATTTGAAGTTCTAAGGGATTGCAATTTACTTTGATATAACAAAGAATTC
TAATCTTTGAAAGCATTTTTTTCTCACCAAATTTAACTCCAACCTATTCT
CGGCGGAAAAAGTTCAAAACTTGATAGAACTAAATAATAATTTTCAGACT
TTTTTTAATTAAGCCATGGCAAAAAACTTAATTGAGTACTATAAAATTAA
TTGAGCAAAGTTACGTTCCTATTTTAAAATGTTACAGAAGCAGACAGAAG
CAGTGATGCGAGACTAAAACTATTAAAAGCAGGAAAATAAAAGAATTCTA
TCGAGAATATAATAAATGAAAGGTTAAGCGATTTAAAACACAGTGCTTAG
CTATAAAAAGTCTATAAGTACAGTGAAAGCAACAATGCCTTTTGGAATTA
AATAATTCTGGCCAGAAAAAAGATAAATGGATACAAACTGATAATTGAAA
ATTGAGACAAGATTCTGATTGGAGGCACAATGAATACAAAAAATTAATGC
CTATATCCCCTTTTGTTCTATTTAGGAAAAAAAGCAAAATAAAAGTCATT
ATCAAACGTAAAACGAAAATACCTGGTAGAGGACAAAACTGTTTGTAACA
CTGAATATTTTCTCTTTATTTTACAGTTCTGAATGATTAAGTTCAAATGG
AAGAACAAGCAATAGCAGTTGCTAAGTATGATTACACAGCGGAAGGTCAA
GGTGAGCTAAGTATCCGAAAAAATGAAAAATTAACTGTAATTGATGACAC
TCAACTTTGGTGGAAAGTTCAAAATGAGAAGTCAGTATCAGGCTATGTTC
CCTCAAACTACTTGGCAAGAAAAGATTCAGTGAAGGGAAAGAAAAATATC
GTGAAAACAATAAAGGAAAAATTAAATACAAAAAAGACTAATGAAGTTGA
ATCACCTCAGGCTGATTTGCAGTCTCCTAAACTAAAGGGTGGAGGAAAGG
TGTTGATGGTGGGTACTGCTAAATTTAAATACATTCCCCAGAGAGATGAC
GAGATTGAACTTAGTAAAGGTGATACTGTTATGATATTAGAAATGGAGCA
TGACGGTTGGTGTCGTGGGGAAAGTAATGGTAAAGTTGGATGGCTTCCCT
TTAATTATCTTCAAAAGAGTGAACCTCAGGGTGAACAAGCATCTCCATCT
GAATATGCCGACCCGAATGATGTTATGGATAAGCAAATCATTTGTAAAGT
TAGAACATTGTACCCATTCAACTCTCAATCGTCAGAAGAACTTTCTTTTG
AAAAAGACTCTATATTAGAAATAGTTGACAAGCCTAAGGATGACCCGGAC
TGGTGGCAAGCAAGGAAATCTAGTGGAGAAATTGGTCTCGTTCCTAGAAA
TTATGTTGATGAAATTGTCTCTCCTGTTTTGACACCTGGCCCAGTAAAAC
CAAAACAAGGTAGCAATTTTCCAGCATTGTCCTCTTCTCCAGCTAAAGCT
CCTCCTAGAGATTTGGATGTTAATGGAAAATTCAATGACCGCCCTTGGTA
CCATGGATCATTGAAAAGACAGGAATGCGAAAATGTTTTGCGCACTCACG
GTGAAGATGGCCAATATCTTGTCAGGAATAGTGAAAGCAAAGTGAGTATG
ATATTGAACTTATTTTTGCGTTGGTTTGATTGTTCACCATTTATATTGAT
TTTGTCATAAACTGCAAAATTTGAATCCTGAAAACCCAGATTGTGTCATC
CACAATGTGTTGGCCCAAAGTGTACCAAAATAATGGTTTTATGTTGCTAT
ACAAACCAATTTGCAGCGATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGTATTT
CAAGAAGTGTTCGAATTTACAACTGTTCAGTTTCATGTTATTGTTCTCAG
TACAATCATAAACTATTGAGATTTCTACATCTTTGGGTTGACTCAGACTT
TATTTGAAGTTCTAAGGGGGATTGTAATTTACTTTGATATAAAACTACAT
TAGTACATTATGCCATTATGTAAAGATAGAATACTTGGCCACCATCCGTA
AGGTCATGGGTTTCATTCCCTAACCAGGTTACAACATAGACTTCATACTT
AGAACAAAATGGCACTGCTGGATGCTCAGCAATTAAGGGAAGGATCAGGG
GTAAGTGGAGAAATCTAGGGAAAAAGAGTGGCAATCTTTGGGTTGACTCA
GACTTTATTTGAAGTTCTAAGGGATTGCAATTTACTTTGATATAACAAAG
AATTCTAATCTTTGAAAGCATTTTTTTCTCACCAAATTTAACTCCAACCT
ATTCTCGGCGGAAAAAGTTCAAAACTTGATAGAACTAAATAATAATTTTC
AGACTTTTAATTAAGCCATGGCAAAAAACTTAATTGAGTACTATAAAATT
AATTGAGCAAAGTTACGTTCCTATTTTAAAATGTTACAGAAGCAGTGATG
CGAGACTAAAACTATTAAAAGCAGGAAAATAAAAGAATTCTATTGAGAAT
ATAATAAATGAAAGGTTAAGCAATTTAAAACACAGTGCTTAGCTATAAAA
AGTCTACAAGTACAGTGAAAGCAACAATGCCTTTTGGAATTAAATAATTC
TGACCAGAAAATATAAATGGATACAAACAAACATAATTGAAAATTGAGAC
AAGATTCTGATTGGAGGCACAATGAATACAAAAAATTAATGCCTATATCC
CCTTTTGTTCTATTTAGGAAAAAAAGCAAAATAAAAGTCATTATCAAACG
TAAAACGAAAATACCTGGTAGAGGACAAAACTGTTTGTAACACTGAATAT
TTTCTCTTTATTTTACAGTTCTGAATGATTAAGTTCAAATGGAAGAACAA
GCAATAGCAGTTGCTAAGTATGATTACACAGCGGAAGGTCAAGGTGAGCT
AAGTATCCGAAAAAATGAAAAATTAACTGTAATTGATGACACTCAACTTT
GGTGGAAAGTTCAAAATGAGAAGTCAGTATCAGGCTATGTTCCCTCAAAC
TACTTGGCAAGAAAAGATTCAGTGAAGGGAAAGAAAAATATCGTGAAAAC
AATAAAGGAAAAATTAAATACAAAAAAGACTAATGAAGTTGAATCACCTC
AGGCTGATTTGCAGTCTCCTAAACTAAAGGGTGGAGGAAAGGTGTTGATG
GTGGGTACTGCTAAATTTAAATACATTCCCCAGAGAGATGACGAGATTGA
ACTTAGTAAAGGTGATACTGTTATGATATTAGAAATGGAGCATGACGGTT
GGTGTCGTGGGGAAAGTAATGGTAAAGTTGGATGGCTTCCCTTTAATTAT
CTTCAAAAGAGTGAACCTCAGGGTGAACAAGCATCTCCATCTGAATATGC
CGACCCGAATGATGTTATGGATAAGCAAATCATTTGTAAAGTTAGAACAT
TGTACCCATTCAACTCTCAATCGTCAGAAGAACTTTCTTTTGAAAAAGAC
TCTATATTAGAAATAGTTGACAAGCCTAAGGATGACCCGGACTGGTGGCA
AGCAAGGAAATCTAGTGGAGAAATTGGTCTCGTTCCTAGAAATTATGTTG
ATGAAATTGTCTCTCCTGTTTTGACACCTGGCCCAGTAAAACCAAAACAA
GGTAGCAATTTTCCAGCATTGTCCTCTTCTCCAGCTAAAGCTCCTCCTAG
AGATTTGGATGTTAATGGAAAATTCAATGACCGCCCTTGGTACCATGGAT
CATTGAAAAGACAGGAATGCGAAAATGTTTTGCGCACTCACGGTGAAGAT
GGCCAATATCTTGTCAGGAATAGTGAAAGCAAAGTGAGTATGATATTGAA
CTTATTTTTGCGTTGGTTTGATTGTTCACCATTTATATTGATTTTGTCAT
AAACTGCAAAATTTGAATCCTGAAAACCCAGATTGTGTCATCCACAATGT
GTTGGCCCAAAGTGTACCAAAATAATGGTTTTATGTTGCTATACAAACCA
ATTTGCAGCGATTTGCAGCGATTTAAATGACTAGACTTAGGCAGGCCTTC
AACATAACAAGATTCACATAGGGAGTTGGGTATGTTTTGAATTATTTTAT
GAGGCATTTTGCTTTCCGAAGTTTTATCAAATTGCACGAGCGATAGCGAT
AGCCCTCCTTCGTATATGATTATTAGTCCCAATTACTAGGTATTTACTAC
CAGGCAAAATTCCAAGCATTTTAGTCACTGGCTGTTTATTTGGATTAGAA
ATTAGATTTAGAATTTAGAAATTAGAATTAGAAAGTTGACCAACTGAGTA
CCCACCATAAGTGGTCGATGCCTGTCAAAGGCCCTCGAAACTTGTTAGGG
ACGTCTCTTGACCTTTCATGGAACATTTATTTTCAAGGAATTCTAACCAT
AAAGAGAAAATAATTCTTACATTGTTGTTTACCATCTACATTATTTATTT
TCAACATTTTTGTGATACATAAATAGAATTTCTCCAATATTGATTTTCAA
AACTCAATTTAAAATTGAGTATTTTGGCCGTTAAAAACGGCCACATAAAA
TTGCTTGGAATTTCACTGAATACCGTGTACCTTTGGCTCTGATGATCATA
TAATTTTCCTTTTTTAGCCTGGTGACTTTTCACTTTCGATGAAAGCACCT
GATCGCATGAAGCATTTCAAGATTACGCACACAGAAGATCAATATGTTAT
AGGTCAACGTTCCTTTGATAGCATGGACAGTTTAATCAGCCATTATGAAA
AGGCTCCTATTTACACAACAGAGGCTGGCCAAAAAATGTATCTTACTCAA
CCAATGAGTAAATCGCTTACGAGAAACGGCTATTCTTGAATCATGCTAAA
TGATATGTATAAATTAGTTATTGGTATCAAAGTGTACTCAATTATGAAGT
TTGTAGCCTCTTTAGCTTCTGGCTGGTCAAATGTCGAGATTTTCGAATGT
TGCTGAATGTGAATATACGTAATAGAAAGAAAGCATTCGAGTAAACAGTA
CCAAGAACTGTCACGAGCAGGAATCTTTCTGTATGGAAAAACCCTGGAAA
CACTGTAGGATACCTCATGTCGCCAGACTGGATGCAATTCAAAATAGTTT
TGTTATTAATCAGATTTTATCATTATTACTATTATTAATTTCTATTCTTT
TACGTAAACAAAATCTTACTTTATTTTAAATATTTTTTCAGTGACAGTGA
ACTTCCAAAAACGAATCAATCTGACGAGATTTTGTCAATCAATTTGTTAA
GTTTTCAGTTTTGTTATCATTGATGTGAATTGTCACTGCAATATCCGCGT
TTAGGTGACTTGCTTTTTGGATATGCTGATAGGTTGAAAACAAAAACTCT
ATGTAAAGCATCACTCGAGTAAATTGCCGGAGCAAAGGACAAAGCCTTTT
TTTAGCTTGTAGTTGTATTGTTAAAGAAGTGGAGTAAGTTTATTATTATT
GTTATTGTTGTTATTATTCCTTTATTAATAATGTATTACTATGAATGTTT
GATGATTTTTAATTTCACTTTTTTTACTTAATCTAAATTAATTGATATTG
AATCGTTTGCTTTCAATGTCTCCTCTAAAGATTTTTCAAAGTTTCTAAAC
AATGAACATTCTCCGAATAAATTATCTTTGAAATTTTCAAAAGTAAAACA
CATAATATAGAATTTGAGTGAAGTGTAAAATTGACAATGAATTTTTTTTA
ATTAGGAAGAACTAAGTGTCACTTTCTCTGTCCTGATATTGTAGAAATAT
CCAGAAAAAATACTTAACTCAACAGGAAGTTCATGGGCTTTACAAGAATC
CCAATACTTACCTCTCTTTTTGTATAGATTTTTTACAAACCATTTTTCTT
TCAGTGTACTATAGATCAGGTTTTCTATGCTCGTATTTGAAGCATGTAAA
TTTTCCTTTTGGGGATCTTAACCCTTAGGAGGCGAAAGACGTATATATAC
GTTTTGAAAAGGTCATTTTACCGCTTGAGATTCAGAGANN

Coding sequence (CDS) from alignment at sc0002982:3429..10418-

>TCONS_00041712 ID=TCONS_00041712|Name=TCONS_00041712|organism=Clytia hemisphaerica|type=CDS|length=2334bp|location=Sequence derived from alignment at sc0002982:3429..10418- (Clytia hemisphaerica)
CCTGGTGACTTTTCACTTTCGATGAAAGCACCTGATCGCATGAAGCATTT
CAAGATTACGCACACAGAAGATCAATATGTTATAGGTCAACGTTCCTTTG
ATAGCATGGACAGTTTAATCAGCCATTATGAAAAGGCTCCTATTTACACA
ACAGAGGCTGGCCAAAAAATGTATCTTACTCAACCAATGAGTAAATCGCT
TACGAGAAACGGCTATTCTTGAATGGAAGAACAAGCAATAGCAGTTGCTA
AGTATGATTACACAGCGGAAGGTCAAGGTGAGCTAAGTATCCGAAAAAAT
GAAAAATTAACTGTAATTGATGACACTCAACTTTGGTGGAAAGTTCAAAA
TGAGAAGTCAGTATCAGGCTATGTTCCCTCAAACTACTTGGCAAGAAAAG
ATTCAGTGAAGGGAAAGAAAAATATCGTGAAAACAATAAAGGAAAAATTA
AATACAAAAAAGACTAATGAAGTTGAATCACCTCAGGCTGATTTGCAGTC
TCCTAAACTAAAGGGTGGAGGAAAGGTGTTGATGGTGGGTACTGCTAAAT
TTAAATACATTCCCCAGAGAGATGACGAGATTGAACTTAGTAAAGGTGAT
ACTGTTATGATATTAGAAATGGAGCATGACGGTTGGTGTCGTGGGGAAAG
TAATGGTAAAGTTGGATGGCTTCCCTTTAATTATCTTCAAAAGAGTGAAC
CTCAGGGTGAACAAGCATCTCCATCTGAATATGCCGACCCGAATGATGTT
ATGGATAAGCAAATCATTTGTAAAGTTAGAACATTGTACCCATTCAACTC
TCAATCGTCAGAAGAACTTTCTTTTGAAAAAGACTCTATATTAGAAATAG
TTGACAAGCCTAAGGATGACCCGGACTGGTGGCAAGCAAGGAAATCTAGT
GGAGAAATTGGTCTCGTTCCTAGAAATTATGTTGATGAAATTGTCTCTCC
TGTTTTGACACCTGGCCCAGTAAAACCAAAACAAGGTAGCAATTTTCCAG
CATTGTCCTCTTCTCCAGCTAAAGCTCCTCCTAGAGATTTGGATGTTAAT
GGAAAATTCAATGACCGCCCTTGGTACCATGGATCATTGAAAAGACAGGA
ATGCGAAAATGTTTTGCGCACTCACGGTGAAGATGGCCAATATCTTGTCA
GGAATAGTGAAAGCAAACCTGGTGACTTTTCACTTTCGATGAAAGCACCT
GATCGCATGAAGCATTTCAAGATTACGCACACAGAAGATCAATATGTTAT
AGGTCAACGTTCCTTTGATAGCATGGACAGTTTAATCAGCCATTATGAAA
AGGCTCCTATTTACACAACAGAGGCTGGCCAAAAAATGTATCTTACTCAA
CCAATGAGTAAATCGCTTACGAGAAACGGCTATTCTTGAATGGAAGAACA
AGCAATAGCAGTTGCTAAGTATGATTACACAGCGGAAGGTCAAGGTGAGC
TAAGTATCCGAAAAAATGAAAAATTAACTGTAATTGATGACACTCAACTT
TGGTGGAAAGTTCAAAATGAGAAGTCAGTATCAGGCTATGTTCCCTCAAA
CTACTTGGCAAGAAAAGATTCAGTGAAGGGAAAGAAAAATATCGTGAAAA
CAATAAAGGAAAAATTAAATACAAAAAAGACTAATGAAGTTGAATCACCT
CAGGCTGATTTGCAGTCTCCTAAACTAAAGGGTGGAGGAAAGGTGTTGAT
GGTGGGTACTGCTAAATTTAAATACATTCCCCAGAGAGATGACGAGATTG
AACTTAGTAAAGGTGATACTGTTATGATATTAGAAATGGAGCATGACGGT
TGGTGTCGTGGGGAAAGTAATGGTAAAGTTGGATGGCTTCCCTTTAATTA
TCTTCAAAAGAGTGAACCTCAGGGTGAACAAGCATCTCCATCTGAATATG
CCGACCCGAATGATGTTATGGATAAGCAAATCATTTGTAAAGTTAGAACA
TTGTACCCATTCAACTCTCAATCGTCAGAAGAACTTTCTTTTGAAAAAGA
CTCTATATTAGAAATAGTTGACAAGCCTAAGGATGACCCGGACTGGTGGC
AAGCAAGGAAATCTAGTGGAGAAATTGGTCTCGTTCCTAGAAATTATGTT
GATGAAATTGTCTCTCCTGTTTTGACACCTGGCCCAGTAAAACCAAAACA
AGGTAGCAATTTTCCAGCATTGTCCTCTTCTCCAGCTAAAGCTCCTCCTA
GAGATTTGGATGTTAATGGAAAATTCAATGACCGCCCTTGGTACCATGGA
TCATTGAAAAGACAGGAATGCGAAAATGTTTTGCGCACTCACGGTGAAGA
TGGCCAATATCTTGTCAGGAATAGTGAAAGCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025632XLOC_025632Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041712-proteinTCONS_00041712-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041712-exon-sc0002982-1575043694:8678..10418TCONS_00041712-exon-sc0002982-1575043694:8678..10418Clytia hemisphaericaexon
TCONS_00041712-exon-sc0002982-1575043694:3429..4801TCONS_00041712-exon-sc0002982-1575043694:3429..4801Clytia hemisphaericaexon
TCONS_00041712-exon-sc0002982-1510915933:8678..10418TCONS_00041712-exon-sc0002982-1510915933:8678..10418Clytia hemisphaericaexon
TCONS_00041712-exon-sc0002982-1510915933:3429..4801TCONS_00041712-exon-sc0002982-1510915933:3429..4801Clytia hemisphaericaexon
TCONS_00041712-exon-sc0002982-1491911889:8678..10418TCONS_00041712-exon-sc0002982-1491911889:8678..10418Clytia hemisphaericaexon
TCONS_00041712-exon-sc0002982-1491911889:3429..4801TCONS_00041712-exon-sc0002982-1491911889:3429..4801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002982supercontigsc0002982:3429..10418 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.65455	5.38067	8.93234	10.4564	21.0316	18.0773	14.0706	16.0817	6.3405	6.85417	5.63642	5.61848	5.76231	4.28344	4.60911	4.80734	7.66812	7.5087	4.07191	6.89869	9.34705	8.45165	6.06511	5.94188	7.73568	9.35087	10.8174	8.14129	8.8068	8.61176
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001452SH3_domain
IPR000980SH2
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00041712 vs. Swiss-Prot (Human)
Match: NCK2 (Cytoplasmic protein NCK2 OS=Homo sapiens GN=NCK2 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 1.138e-90
Identity = 154/395 (38.99%), Postives = 238/395 (60.25%), Query Frame = 2 
Query:  797 MEEQAIAVAKYDYTAEGQGELSIRKNEKLTVIDDTQLWWKVQNEKSVSGYVPSNYLARKDSVKGKKNIVKTIKEKLNTKKTNEVES-------PQADLQSPXXXXXXXXXXXXT----AKFKYIPQRDDEIELSKGDTVMILEMEHDGWCRGESNGKVGWLPFNYLQKSEPQGEQASPS-----EYADPNDVMDKQIICKVRTLYPFNSQSSEELSFEKDSILEIVDKPKDDPDWWQARKSSGEIGLVPRNYVDEIVSPVLTPGP-VKPKQGSNFXXXXXXXXXXXXRDLDVNGKFNDRPWYHGSLKRQECENVLRTHGEDGQYLVRNSESKPGDFSLSMKAPDRMKHFKITHTEDQYVIGQRSFDSMDSLISHYEKAPIYTTEAGQKMYLTQPM 1930
            M E+ I +AK+DYTA+   EL I+KNE+L ++DD++ WW+V+N  + +GYVPSNY+ RK+S+K K ++VK +K+ L   KT    S       P  D + P    G   +         KF Y+ +R+DE+ L KG  V ++E   DGW RG  NG++GW P NY+ +   +    SPS     + A  ++    +++  V+TLYPF+S + EEL+FEK   +E+++KP++DP+WW+ + + G++GLVP+NYV      VL+ GP + P           S           +G+F  R WY+G++ R + E  L   G +G +L+R+SES P DFS+S+KA  + KHFK+   ++ Y IGQR F +MD L+ HY+KAPI+T+E G+K+YL + +
Sbjct:    1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKNSLK-KGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVDEAAAESPSFLSLRKGASLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV-----VVLSDGPALHPAHAPQISYTGPSS----------SGRFAGREWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 379
The following BLAST results are available for this feature:
BLAST of TCONS_00041712 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCK21.138e-9038.99Cytoplasmic protein NCK2 OS=Homo sapiens GN=NCK2 P... [more]
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