TCONS_00041711 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041711
Unique NameTCONS_00041711
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2336

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041711 ID=TCONS_00041711|Name=TCONS_00041711|organism=Clytia hemisphaerica|type=transcript|length=2336bp
CTGAATGATTAAGTTCAAATGGAAGAACAAGCAATAGCAGTTGCTAAGTA
TGATTACACAGCGGAAGGTCAAGGTGAGCTAAGTAtccgaaaaaatgaaa
aattaactgtAATTGATGACACTCAACTTTGGTGGAAAGTTCAAAATGAG
AAGTCAGTATCAGGCTATGTTCCCTCAAACTACTTGGCAAGAAAAGATTC
AGTGAAGGGAAAGAAAAATATCGTGAAAACAATaaaggaaaaattaaata
caaaaAAGACTAATGAAGTTGAATCACCTCAGGCTGATTTGCAGTCTCCT
AAACTAAAGGGTGGAGGAAAGGTGTTGATGGTGGGTACTGCTAAATTTAA
ATACATTCCCCAGAGAGATGACGAGATTGAACTTAGTAAAGGTGATACTG
TTATGATATTAGAAATGGAGCATGACGGTTGGTGTCGTGGGGAAAGTAAT
GGTAAAGTTGGATGGCTTCCCTTTAATTATCTTCAAAAGAGTGAACCTCA
GGGTGAACAAGCATCTCCATCTGAATATGCCGACCCGAATGATGTTATGG
ATAAGCAAATCATTTGTAAAGTTAGAACATTGTACCCATTCAACTCTCAA
TCGTCAGAAGAACTTTCTTTTGAAAAAGACTCTATATTAGAAATAGTTGA
CAAGCCTAAGGATGACCCGGACTGGTGGCAAGCAAGGAAATCTAGTGGAG
AAATTGGTCTCGTTCCTAGAAATTATGTTGATGAAATTGTCTCTCCTGTT
TTGACACCTGGCCCAGTAAAACCAAAACAAGGTAGCAATTTTCCAGCATT
GTCCTCTTCTCCAGCTAAAGCTCCTCCTAGAGATTTGGATGTTAATGGAA
AATTCAATGACCGCCCTTGGTACCATGGATCATTGAAAAGACAGGAATGC
GAAAATGTTTTGCGCACTCACGGTGAAGATGGCCAATATCTTGTCAGGAA
TAGTGAAAGCAAAcCTGGTGACTTTTCACTTTCGATGAAAGCACCTGATC
GCATGAAGCATTTCAAGATTACGCACACAGAAGATCAATATGTTATAGGT
CAACGTTCCTTTGATAGCATGGACAGTTTAATCAGCCATTATGAAAAGGC
TCCTATTTACACAACAGAGGCTGGCCAAAAAATGTATCTTACTCAACCAA
TGAGTAAATCGCTTACGAGAAACGGCTATTCTTGAATCATGCTAAATGAT
ATGTATAAATTAGTTATTGGTATCAAAGTGTACTCAATTATGAAGTTTGT
AGCCTCTTTAGCTTCTGGCTGGTCAAATGTCGAGATTTTCGAATGTTGCT
GAATGTGAATATACGTAATAGAAAGAAAGCATTCGAGTAAACAGTACCAA
GAACTGTCACGAGCAGGAATCTTTCTGTATGGAAAAACCCTGGAAACACT
GTAGGATACCTCATGTCGCCAGACTGGATGCAATTCAAAATAGTTTTGTT
ATTAATCAGATTTTAtcattattactattattaatTTCTATTCTTTTACG
TAAACAAAATCTTactttattttaaatattttttcagtgACAGTGAACTT
CCAAAAACGAATCAATCTGACGAGATTTTGTCAATCAATTTGTTaagttt
tcagttttgttaTCATTGATGTGAATTGTCACTGCAATATCCGCGTTTAG
GTGACTTGCTTTTTGGATATGCTGATaggttgaaaacaaaaactctATGT
AAAGCATCACTCGAGTAAATTGCCGGAGCAAAGGACAAAGCCTTTTTTTA
GCTTGTAGTTGTATTGTTAAAGAAGTGGAGTAagtttattattattgtta
ttgttgttattattCCTTTATTAATAATGTATTACTATGAatgtttgatg
atttttaatttcactttttttacttAATCTAAATTAATTGATATTGAATC
GTTTGCTTTCAATGTCTCctctaaagatttttcaaagtttctaAACAATG
AACATTCTCCGAATAAAttatctttgaaattttcaaaagtaaaacacATA
ATATAGAATTTGAGTGAAGTGTAAAATTgacaatgaattttttttaatta
ggaAGAACTAAGTGTCACTTTCTCTGTCCTGATATTGTAGAAATATCCAG
AAAAAATACTTAACTCAACAGGAAGTTCATGGGCTTTACAAGAATCCCAA
TACTTACCTCTCTTTTTGTATAGATTTTTTACAAACCATTTTTCTTTCAG
TGTACTATAGATCAGGTTTTCTATGCTCGTATTTGAAGCATGTAAATTTT
CCTTTTGGGGATCTTAACCCTTAGGAGGCGAaagacgtatatatacgttt
tgaaaaggtcattttaccgctTGAGATTCAGAGANN
Run BLAST on NCBI

transcript from alignment at sc0002982:3429..6548-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041711 ID=TCONS_00041711|Name=TCONS_00041711|organism=Clytia hemisphaerica|type=transcript|length=3120bp|location=Sequence derived from alignment at sc0002982:3429..6548- (Clytia hemisphaerica)
CTGAATGATTAAGTTCAAATGGAAGAACAAGCAATAGCAGTTGCTAAGTA
TGATTACACAGCGGAAGGTCAAGGTGAGCTAAGTATCCGAAAAAATGAAA
AATTAACTGTAATTGATGACACTCAACTTTGGTGGAAAGTTCAAAATGAG
AAGTCAGTATCAGGCTATGTTCCCTCAAACTACTTGGCAAGAAAAGATTC
AGTGAAGGGAAAGAAAAATATCGTGAAAACAATAAAGGAAAAATTAAATA
CAAAAAAGACTAATGAAGTTGAATCACCTCAGGCTGATTTGCAGTCTCCT
AAACTAAAGGGTGGAGGAAAGGTGTTGATGGTGGGTACTGCTAAATTTAA
ATACATTCCCCAGAGAGATGACGAGATTGAACTTAGTAAAGGTGATACTG
TTATGATATTAGAAATGGAGCATGACGGTTGGTGTCGTGGGGAAAGTAAT
GGTAAAGTTGGATGGCTTCCCTTTAATTATCTTCAAAAGAGTGAACCTCA
GGGTGAACAAGCATCTCCATCTGAATATGCCGACCCGAATGATGTTATGG
ATAAGCAAATCATTTGTAAAGTTAGAACATTGTACCCATTCAACTCTCAA
TCGTCAGAAGAACTTTCTTTTGAAAAAGACTCTATATTAGAAATAGTTGA
CAAGCCTAAGGATGACCCGGACTGGTGGCAAGCAAGGAAATCTAGTGGAG
AAATTGGTCTCGTTCCTAGAAATTATGTTGATGAAATTGTCTCTCCTGTT
TTGACACCTGGCCCAGTAAAACCAAAACAAGGTAGCAATTTTCCAGCATT
GTCCTCTTCTCCAGCTAAAGCTCCTCCTAGAGATTTGGATGTTAATGGAA
AATTCAATGACCGCCCTTGGTACCATGGATCATTGAAAAGACAGGAATGC
GAAAATGTTTTGCGCACTCACGGTGAAGATGGCCAATATCTTGTCAGGAA
TAGTGAAAGCAAAGTGAGTATGATATTGAACTTATTTTTGCGTTGGTTTG
ATTGTTCACCATTTATATTGATTTTGTCATAAACTGCAAAATTTGAATCC
TGAAAACCCAGATTGTGTCATCCACAATGTGTTGGCCCAAAGTGTACCAA
AATAATGGTTTTATGTTGCTATACAAACCAATTTGCAGCGATTTGCAGCG
ATTTAAATGACTAGACTTAGGCAGGCCTTCAACATAACAAGATTCACATA
GGGAGTTGGGTATGTTTTGAATTATTTTATGAGGCATTTTGCTTTCCGAA
GTTTTATCAAATTGCACGAGCGATAGCGATAGCCCTCCTTCGTATATGAT
TATTAGTCCCAATTACTAGGTATTTACTACCAGGCAAAATTCCAAGCATT
TTAGTCACTGGCTGTTTATTTGGATTAGAAATTAGATTTAGAATTTAGAA
ATTAGAATTAGAAAGTTGACCAACTGAGTACCCACCATAAGTGGTCGATG
CCTGTCAAAGGCCCTCGAAACTTGTTAGGGACGTCTCTTGACCTTTCATG
GAACATTTATTTTCAAGGAATTCTAACCATAAAGAGAAAATAATTCTTAC
ATTGTTGTTTACCATCTACATTATTTATTTTCAACATTTTTGTGATACAT
AAATAGAATTTCTCCAATATTGATTTTCAAAACTCAATTTAAAATTGAGT
ATTTTGGCCGTTAAAAACGGCCACATAAAATTGCTTGGAATTTCACTGAA
TACCGTGTACCTTTGGCTCTGATGATCATATAATTTTCCTTTTTTAGCCT
GGTGACTTTTCACTTTCGATGAAAGCACCTGATCGCATGAAGCATTTCAA
GATTACGCACACAGAAGATCAATATGTTATAGGTCAACGTTCCTTTGATA
GCATGGACAGTTTAATCAGCCATTATGAAAAGGCTCCTATTTACACAACA
GAGGCTGGCCAAAAAATGTATCTTACTCAACCAATGAGTAAATCGCTTAC
GAGAAACGGCTATTCTTGAATCATGCTAAATGATATGTATAAATTAGTTA
TTGGTATCAAAGTGTACTCAATTATGAAGTTTGTAGCCTCTTTAGCTTCT
GGCTGGTCAAATGTCGAGATTTTCGAATGTTGCTGAATGTGAATATACGT
AATAGAAAGAAAGCATTCGAGTAAACAGTACCAAGAACTGTCACGAGCAG
GAATCTTTCTGTATGGAAAAACCCTGGAAACACTGTAGGATACCTCATGT
CGCCAGACTGGATGCAATTCAAAATAGTTTTGTTATTAATCAGATTTTAT
CATTATTACTATTATTAATTTCTATTCTTTTACGTAAACAAAATCTTACT
TTATTTTAAATATTTTTTCAGTGACAGTGAACTTCCAAAAACGAATCAAT
CTGACGAGATTTTGTCAATCAATTTGTTAAGTTTTCAGTTTTGTTATCAT
TGATGTGAATTGTCACTGCAATATCCGCGTTTAGGTGACTTGCTTTTTGG
ATATGCTGATAGGTTGAAAACAAAAACTCTATGTAAAGCATCACTCGAGT
AAATTGCCGGAGCAAAGGACAAAGCCTTTTTTTAGCTTGTAGTTGTATTG
TTAAAGAAGTGGAGTAAGTTTATTATTATTGTTATTGTTGTTATTATTCC
TTTATTAATAATGTATTACTATGAATGTTTGATGATTTTTAATTTCACTT
TTTTTACTTAATCTAAATTAATTGATATTGAATCGTTTGCTTTCAATGTC
TCCTCTAAAGATTTTTCAAAGTTTCTAAACAATGAACATTCTCCGAATAA
ATTATCTTTGAAATTTTCAAAAGTAAAACACATAATATAGAATTTGAGTG
AAGTGTAAAATTGACAATGAATTTTTTTTAATTAGGAAGAACTAAGTGTC
ACTTTCTCTGTCCTGATATTGTAGAAATATCCAGAAAAAATACTTAACTC
AACAGGAAGTTCATGGGCTTTACAAGAATCCCAATACTTACCTCTCTTTT
TGTATAGATTTTTTACAAACCATTTTTCTTTCAGTGTACTATAGATCAGG
TTTTCTATGCTCGTATTTGAAGCATGTAAATTTTCCTTTTGGGGATCTTA
ACCCTTAGGAGGCGAAAGACGTATATATACGTTTTGAAAAGGTCATTTTA
CCGCTTGAGATTCAGAGANN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025632XLOC_025632Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041711-exon-sc0002982-1575043694:5586..6548TCONS_00041711-exon-sc0002982-1575043694:5586..6548Clytia hemisphaericaexon
TCONS_00041711-exon-sc0002982-1575043694:3429..4801TCONS_00041711-exon-sc0002982-1575043694:3429..4801Clytia hemisphaericaexon
TCONS_00041711-exon-sc0002982-1510915933:5586..6548TCONS_00041711-exon-sc0002982-1510915933:5586..6548Clytia hemisphaericaexon
TCONS_00041711-exon-sc0002982-1510915933:3429..4801TCONS_00041711-exon-sc0002982-1510915933:3429..4801Clytia hemisphaericaexon
TCONS_00041711-exon-sc0002982-1491911889:5586..6548TCONS_00041711-exon-sc0002982-1491911889:5586..6548Clytia hemisphaericaexon
TCONS_00041711-exon-sc0002982-1491911889:3429..4801TCONS_00041711-exon-sc0002982-1491911889:3429..4801Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002982supercontigsc0002982:3429..6548 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
37.4361	36.4538	61.5488	66.8391	94.0003	67.3479	70.4418	73.8788	52.1311	57.5636	36.3571	32.3507	34.3172	28.1233	27.9721	27.1996	49.9178	53.2219	30.326	41.7873	57.2731	61.2344	41.1345	47.7234	31.3939	36.7592	77.7399	63.9378	58.7293	63.3951
Blast
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BLAST of TCONS_00041711 vs. Swiss-Prot (Human)
Match: NCK2 (Cytoplasmic protein NCK2 OS=Homo sapiens GN=NCK2 PE=1 SV=2)

HSP 1 Score: 297.745 bits (761), Expect = 1.801e-92
Identity = 154/395 (38.99%), Postives = 238/395 (60.25%), Query Frame = 1 
Query:   19 MEEQAIAVAKYDYTAEGQGELSIRKNEKLTVIDDTQLWWKVQNEKSVSGYVPSNYLARKDSVKGKKNIVKTIKEKLNTKKTNEVES-------PQADLQSPXXXXXXXXXXXXT----AKFKYIPQRDDEIELSKGDTVMILEMEHDGWCRGESNGKVGWLPFNYLQKSEPQGEQASPS-----EYADPNDVMDKQIICKVRTLYPFNSQSSEELSFEKDSILEIVDKPKDDPDWWQARKSSGEIGLVPRNYVDEIVSPVLTPGP-VKPKQGSNFXXXXXXXXXXXXRDLDVNGKFNDRPWYHGSLKRQECENVLRTHGEDGQYLVRNSESKPGDFSLSMKAPDRMKHFKITHTEDQYVIGQRSFDSMDSLISHYEKAPIYTTEAGQKMYLTQPM 1152
            M E+ I +AK+DYTA+   EL I+KNE+L ++DD++ WW+V+N  + +GYVPSNY+ RK+S+K K ++VK +K+ L   KT    S       P  D + P    G   +         KF Y+ +R+DE+ L KG  V ++E   DGW RG  NG++GW P NY+ +   +    SPS     + A  ++    +++  V+TLYPF+S + EEL+FEK   +E+++KP++DP+WW+ + + G++GLVP+NYV      VL+ GP + P           S           +G+F  R WY+G++ R + E  L   G +G +L+R+SES P DFS+S+KA  + KHFK+   ++ Y IGQR F +MD L+ HY+KAPI+T+E G+K+YL + +
Sbjct:    1 MTEEVIVIAKWDYTAQQDQELDIKKNERLWLLDDSKTWWRVRNAANRTGYVPSNYVERKNSLK-KGSLVKNLKDTLGLGKTRRKTSARDASPTPSTDAEYPANGSGADRIYDLNIPAFVKFAYVAEREDELSLVKGSRVTVMEKCSDGWWRGSYNGQIGWFPSNYVLEEVDEAAAESPSFLSLRKGASLSNGQGSRVLHVVQTLYPFSSVTEEELNFEKGETMEVIEKPENDPEWWKCKNARGQVGLVPKNYV-----VVLSDGPALHPAHAPQISYTGPSS----------SGRFAGREWYYGNVTRHQAECALNERGVEGDFLIRDSESSPSDFSVSLKASGKNKHFKVQLVDNVYCIGQRRFHTMDELVEHYKKAPIFTSEHGEKLYLVRAL 379
The following BLAST results are available for this feature:
BLAST of TCONS_00041711 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
NCK21.801e-9238.99Cytoplasmic protein NCK2 OS=Homo sapiens GN=NCK2 P... [more]
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