TCONS_00041709 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041709
Unique NameTCONS_00041709
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length690

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041709 ID=TCONS_00041709|Name=TCONS_00041709|organism=Clytia hemisphaerica|type=transcript|length=690bp
NATGGCTACTCGCATTGTCATGGCTGCTACAGTTACGAGCCATAGTGATA
ATAGTCCGATCATTAGCTTCTTGATTGACTTGTTATATACGAATGGACCT
TTAACGAATAACTTGGGATGCTTGAACTTTGAAGGGTTCACCCGTGCCAT
TCCTTTCTTCGTCTGGATATTCTCATTCGGCAGGTTCACAACTGCTTTGA
TTCTCTTCAAGAAATCTAGACCAAGTACTAGGTTGAATTCCACGTTGCTT
GACACATACACTTCATGGAGCCAACTTTGACTTCCTCTGGCCAATGGGAG
GATAGTCGACCCTACTATCTCCACTGTGGATCCAGTTATTGATTTTACTG
TACCAAAGTCTCTCGTGTCATCTGTCATCATGAATGGTTCCACGTTGCAT
TGGTCCCACATTTCCTTTTTGATGAAGGATATAGGGCTGCCGGTATCGAT
TAAAGCTTCTAGTTTGATTGGCATGTTCCCCAACAATGCTGTTGCCGTCA
CCAACATCCCGTCATTTGTGCTTCCATTGATGATGTGCTTTACTGCCGAA
ACATGGTTTGCTGAGTTTTTTCCTGTTTTCGCTTGTCGCCTCTTCTTGAT
TTCAGACTTCGAGGTGGAAGCTCTGGTGGCTGATCTTTTGGAATTTGCTT
tgattgtttttcctttttcttcctTTCAGTAGCATTCTNN
Run BLAST on NCBI

protein sequence of TCONS_00041709-protein

>TCONS_00041709-protein ID=TCONS_00041709-protein|Name=TCONS_00041709-protein|organism=Clytia hemisphaerica|type=polypeptide|length=169bp
MLVTATALLGNMPIKLEALIDTGSPISFIKKEMWDQCNVEPFMMTDDTRD
FGTVKSITGSTVEIVGSTILPLARGSQSWLHEVYVSSNVEFNLVLGLDFL
KRIKAVVNLPNENIQTKKGMARVNPSKFKHPKLFVKGPFVYNKSIKKLMI
GLLSLWLVTVAAMTMRVAX
Run BLAST on NCBI

transcript from alignment at sc0002980:3583..4272

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041709 ID=TCONS_00041709|Name=TCONS_00041709|organism=Clytia hemisphaerica|type=transcript|length=690bp|location=Sequence derived from alignment at sc0002980:3583..4272 (Clytia hemisphaerica)
NNAGAATGCTACTGAAaggaagaaaaaggaaaaacaatcaAAGCAAATTC
CAAAAGATCAGCCACCAGAGCTTCCACCTCGAAGTCTGAAATCAAGAAGA
GGCGACAAGCGAAAACAGGAAAAAACTCAGCAAACCATGTTTCGGCAGTA
AAGCACATCATCAATGGAAGCACAAATGACGGGATGTTGGTGACGGCAAC
AGCATTGTTGGGGAACATGCCAATCAAACTAGAAGCTTTAATCGATACCG
GCAGCCCTATATCCTTCATCAAAAAGGAAATGTGGGACCAATGCAACGTG
GAACCATTCATGATGACAGATGACACGAGAGACTTTGGTACAGTAAAATC
AATAACTGGATCCACAGTGGAGATAGTAGGGTCGACTATCCTCCCATTGG
CCAGAGGAAGTCAAAGTTGGCTCCATGAAGTGTATGTGTCAAGCAACGTG
GAATTCAACCTAGTACTTGGTCTAGATTTCTTGAAGAGAATCAAAGCAGT
TGTGAACCTGCCGAATGAGAATATCCAGACGAAGAAAGGAATGGCACGGG
TGAACCCTTCAAAGTTCAAGCATCCCAAGTTATTCGTTAAAGGTCCATTC
GTATATAACAAGTCAATCAAGAAGCTAATGATCGGACTATTATCACTATG
GCTCGTAACTGTAGCAGCCATGACAATGCGAGTAGCCATN

Coding sequence (CDS) from alignment at sc0002980:3583..4272

>TCONS_00041709 ID=TCONS_00041709|Name=TCONS_00041709|organism=Clytia hemisphaerica|type=CDS|length=507bp|location=Sequence derived from alignment at sc0002980:3583..4272 (Clytia hemisphaerica)
ATGTTGGTGACGGCAACAGCATTGTTGGGGAACATGCCAATCAAACTAGA
AGCTTTAATCGATACCGGCAGCCCTATATCCTTCATCAAAAAGGAAATGT
GGGACCAATGCAACGTGGAACCATTCATGATGACAGATGACACGAGAGAC
TTTGGTACAGTAAAATCAATAACTGGATCCACAGTGGAGATAGTAGGGTC
GACTATCCTCCCATTGGCCAGAGGAAGTCAAAGTTGGCTCCATGAAGTGT
ATGTGTCAAGCAACGTGGAATTCAACCTAGTACTTGGTCTAGATTTCTTG
AAGAGAATCAAAGCAGTTGTGAACCTGCCGAATGAGAATATCCAGACGAA
GAAAGGAATGGCACGGGTGAACCCTTCAAAGTTCAAGCATCCCAAGTTAT
TCGTTAAAGGTCCATTCGTATATAACAAGTCAATCAAGAAGCTAATGATC
GGACTATTATCACTATGGCTCGTAACTGTAGCAGCCATGACAATGCGAGT
AGCCATN
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025630XLOC_025630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041709-exon-sc0002980-1491911889:3583..4272TCONS_00041709-exon-sc0002980-1491911889:3583..4272Clytia hemisphaericaexon
TCONS_00041709-exon-sc0002980-1510915933:3583..4272TCONS_00041709-exon-sc0002980-1510915933:3583..4272Clytia hemisphaericaexon
TCONS_00041709-exon-sc0002980-1575043694:3583..4272TCONS_00041709-exon-sc0002980-1575043694:3583..4272Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041709-proteinTCONS_00041709-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002980supercontigsc0002980:3583..4272 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.147517	0.143852	1.27153	1.09356	0.298402	0.235801	3.18413	3.85634	0.497238	1.23182	0.550385	2.4441	5.18373	5.15985	2.01242	6.16465	2.02341	2.26007	0.47044	0.246141	2.2313	2.50719	1.01803	1.36653	3.04622	4.02854	0.606824	0.235146	0	0.0834085
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR019103Peptidase_aspartic_DDI1-type
IPR021109Peptidase_aspartic_dom
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
Vocabulary: Molecular Function
TermDefinition
GO:0004190aspartic-type endopeptidase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004190 aspartic-type endopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041709 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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