TCONS_00041706 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041706
Unique NameTCONS_00041706
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length236

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041706 ID=TCONS_00041706|Name=TCONS_00041706|organism=Clytia hemisphaerica|type=transcript|length=236bp
CGGATTTaatttcttgtagaaaattttctttttatctaACCCACGCCTAC
AAAATTTGCCGAAGATATGTACAAAAcgtatgaaaaatataaatgtATGT
ACAAAATATAGAGGAAAACTATAAAATTTCTTATGATTAAAAATTCGCAA
ttattgtacaaaaattcaagAACTTTCATGATCGGCCTGGTATGACATAT
CATTTGACTTCAAACctttgatttctaaacgttCTA
Run BLAST on NCBI

transcript from alignment at sc0002979:8321..8556

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041706 ID=TCONS_00041706|Name=TCONS_00041706|organism=Clytia hemisphaerica|type=transcript|length=236bp|location=Sequence derived from alignment at sc0002979:8321..8556 (Clytia hemisphaerica)
TAGaacgtttagaaatcaaagGTTTGAAGTCAAATGATATGTCATACCAG
GCCGATCATGAAAGTTcttgaatttttgtacaataaTTGCGAATTTTTAA
TCATAAGAAATTTTATAGTTTTCCTCTATATTTTGTACATacatttatat
ttttcatacgTTTTGTACATATCTTCGGCAAATTTTGTAGGCGTGGGTta
gataaaaagaaaattttctacaagaaattAAATCCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025627XLOC_025627Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041706-exon-sc0002979-1491911889:8321..8556TCONS_00041706-exon-sc0002979-1491911889:8321..8556Clytia hemisphaericaexon
TCONS_00041706-exon-sc0002979-1510915933:8321..8556TCONS_00041706-exon-sc0002979-1510915933:8321..8556Clytia hemisphaericaexon
TCONS_00041706-exon-sc0002979-1575043694:8321..8556TCONS_00041706-exon-sc0002979-1575043694:8321..8556Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002979supercontigsc0002979:8321..8556 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
14.3889	13.0961	2.17225	2.12521	1.29362	0	0	1.15459	4.04176	5.00637	5.83117	3.83318	3.18988	1.32509	6.53641	5.84548	5.0408	5.90476	2.03944	0	8.34723	6.78581	27.4968	25.9985	0	0	3.94602	11.2301	13.8412	7.59338
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041706 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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