TCONS_00041703 (transcript) - C. hemisphaerica

Overview
NameTCONS_00041703
Unique NameTCONS_00041703
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length743

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00041703 ID=TCONS_00041703|Name=TCONS_00041703|organism=Clytia hemisphaerica|type=transcript|length=743bp
ggcttaaaaaatcgcgaaattaagtacccgccaaatttaatacacgcgaa
atataataccaataaggtacacacaaaaaaacataaaatggcATTCGTGA
AATTGTTACTGGGGGACAATCTACAGTTaagaatgctctaaaaatggcat
tcttaggttctgttgccgaattccatgatggtgatatccTTAAGCGTTTT
TTTGCGGACAATTTCAACATAGATATTCGTATAAAAAAGCAATAACACAA
CGCACGTGATGTTATTCTTTTATCAAACACCTACTTAGGCGGTTTAAGGT
ATTTGGAAACTCATTGCTAGAATGCTCTTTTTTCAGTCAACGAGGCTCCA
AGATGTTTGGGTTTGATGAAAAATGGAGCGTTGATGTTTGTAATCATACG
ATGCAGCCAGATTTAGTATCGTGTGGAGTGTTTTGTTTGTGGTATGCAGA
ATTGATCATTACTGCTGGTGAAGTTCCTGAAATCCTTAGACCCCCTGAGA
TAAGATTGTTTAGACAGAGAATAGCAGAAACACTTCTATGGATTGGAGGC
AATGGAGATTGGTGCCAAAAGTTTTGCCGTGTTTGCGGTGAATCCACCCC
TCCAAAGAAAATTAGACCTAGAACAAAACCGAAATGGGATAACATTGTAT
ACGTGACTTTATGACTGAGACAATTGACAAATATTAACGACATGACTGAA
GgtACAATGCGACCTTTGTATTCCACCAGCTTGGTACCACAAT
Run BLAST on NCBI

transcript from alignment at sc0002977:9119..14679+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00041703 ID=TCONS_00041703|Name=TCONS_00041703|organism=Clytia hemisphaerica|type=transcript|length=5561bp|location=Sequence derived from alignment at sc0002977:9119..14679+ (Clytia hemisphaerica)
ggcttaaaaaatcgcgaaattaagtacccgccaaatttaatacacgcgaa
atataataccaataaggtacacacaaaaaaacataaaatggcATTCGTGA
AATTGTTACTGGGGGACAATCTACAGTTaagaatgctctaaaaatggcat
tcttaggttctgttgccgaattccatgatggtgatatccTTAAGCGTTTT
TTTGCGGACAATTTCAACATAGATATTCGTATAAAAAAGCAATAACACAA
CGCACGTGATGTTATTCTTTTATCAAACACCTACTTAGGCGGTTTAAGGT
ATTTGGAAACTCATTGCTAGAATGCTCTTTTTTCAGTCAACGAGGCTCCA
AGATGTTTGGGTTTGATGAAAAATGGAGCGTTGATGTTTGTAATCATACG
ATGCAGCCAGATTTAGTATCGTGTGGAGTGTTTTGTTTGTGGGTTAGTAT
AAGCCGTAATTTATTCGCCTTGAGACAATCAACAATAGCGCAGTAACACC
AAAATAGCGCGCGCAGGTTaccttttttacaaatttttacaaagctctat
ttcatACACCATGTGCTTTGACCACATGGTAACATGTATCTTTGATCTGA
ATATCTTTTGCATCATGCAATagtaattgaaatattttttagattCACAC
CATAACTCCTGGTTTAGCAGATGACTTTCCTCCACAAATTTCGGTTATTT
AATTCTGGTCTGTAGATTAAGTTGTAACCCAATAAGTAACCCAATTGGGG
TACCCCACCTTTTAGAAACACCCTATTTTTCCTCTTTGAACCTCAGTGGA
ACATCATGGCTGGGTCAATGGTGTAGCATTCTTTGGCTCGCGCAATTCGC
CTGCTTTTGAAAATACCGAAATAACctttcaaaattatttcttctATTTC
GTAGTATGCAGAATTGATCATTACTGCTGGTGAAGTTCCTGAAATCCTTA
GACCCCCTGAGATAAGATTGTTTAGACAGAGAATAGCAGAAACACTTCTA
TGGATTGGAGGttaaattttttacaatttttgattAATTAATTCTGTCCG
ATTAACGAAGTTTACCTCATATTAGAGTTCGTTGAAATTTATATCCTttg
accgaaaaaaaaaacatatccaCATCTATGgagaataaaaaataacaata
ttaCATCCAGCTTCTTAATACTTTTAGGCAATGGAGATTGGTGCCAAAAG
TTTTGCCGTGTTTGCGGTGAATCCACCCCTCCAAAGAAAATTAGACCTAG
AACAAAACCGAAATGGGTAAATATGATTTTATCTTAATTcaggaaaaaat
tgaaatagttTTAAAAATCACTTCTTTTTATAAGTTTCCAGGGGATACCG
CAATCcgggacaaaaggttgtagacttttcaaaaatacatgaaaagtttc
aaaaaaagctctgaAACCCCATTTTTACCAGGgccaatgttgtttttatt
ggatttgtaGAGTTGGGTGACAAGTCTAGAAGCCAAATCCACTCGACATT
GAAGGAAATGCATTTTTTAAAAGTCTTCAGGCCTTTTTTGTTGTCTGAGA
TTGAAGATTGAAAGTTCAATGAGTCTCGCACTTCAACTTTTTCGAGAAGA
CATCTATAATTAGACCATATTCAAGATGGTTTAATCaattataaagaact
ttttagagCTCTCTGGTGCACCCACCACCCACCACCTGGGTGTGGCTGAA
GTTCACctattttcagtcattttcagtttttaaaagtCTAAAATTCACAA
TTACTAAAGCCACGAGGATTGCTAGCAAGCCCGTAGGTGTCCTCTGccaa
ataatcacttgtggttcatTTGGGGAATTTCAgggctttttggacctacc
ccggtggggtagaggtcctataaattaaccgatgtccgtccgttcgtctg
ttcgtccgttcgtctgtctgttaccagcttttctcaggaNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
ttagttttttctgattttttgctcaaagatgcgtattaacaatgcccaaa
acatggccgagtccgatttttgagaaaattttttttccggccgaaaatgc
cggaaatatgcctgaaatcgccgtttttctggattttcattggacttctT
CCAtataattgtttgttttttctttcaaaaacattattaatagcaatgcc
caccatcaagcatgtttcaattttcaataaaattgatttttgaagccgga
actttctaaaaatcgccggNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNaaatgtcaatacctaaattgtgacggagcccgattttcgaaaagaat
ttatttccggccgaaaatgccggaaatatgccggaaaaactgttttttgg
gcattttctcgagattttatcattagttttttctgattttttgcagaaag
atgcgtattcgcaatgctcaaaaaatggccgagttcgatttttgaggaaa
aatttttttccagttgaaaatgctggaaatcgccgttttgcagattttca
ttggattttttccttatatttatatgtttttcacacaaaaagattattga
taacaatgctcaccatcaagcatgattcaattgtcaataaaactgatttt
tgcaaccagaacttcctatttattttttccctacaacccttccctctccc
catcaacaatcaatgatgaatttattgtgatGTGTATTTTCGgtaacgct
atattttctgactgatttttttcatttttcttttcgcattgctatctaac
tttcatcatcaggtaggtccattcagcatgttgcTTGTTTTTGCACTATt
aactaatttttgaaaagtctacagaccttttgtccatgattgcagGTTTG
TCGAAACAGGTCGAAAAACACACCCTCGCGAAAACAATATAACCTTATCA
AatccttttttcttttaatacgAGTTTTCGCATTTTTTTAGGATAACATT
GTATACGTGACTTTATGACTGAGACAATTGACAAATATTAACGACATGAC
TGAAGGTTGACGGTATTACCAATTTTGCATCACGGTGGTCTGCAGAAATT
CGATTGCACGTGCCTCAATGTTATTGTTATTaacattcaaaaattcaaaa
gaggAGAGCACTTTAtcctaaaattgtaaaatatcaAAAGCAAAAATGTC
CCTAGATCACTCTCTTATTTTTGAAATGACATATCGTTGACTCTTTTTAA
CGTTTGACGAGTTTGGTCGAATGTCAAATTAACCTTTAttaaaatagaac
agatttagcCTATCTGCCAAGTTTACAAATTCTATTTATTCACCAAAGCA
GCTCGTTCTTACCGAAACTAAAATTTTCATGAATTCATCCTATATATCTT
GCAAAACTCAACATGTACGGGCAAAGCTATTAACAATATTAAATTAAATG
TATTAAAAAAGGAACAGACCCAACGAACANtttgttttgaaagaatgatg
gttatacttaaaaatgagcatgtttttactggtttgagacagattcaaaa
taacatatttgcgtctaaaggaaatattttatcaccaaaattagataaaa
attgcatataactcactctagctccttggatattgaaaataagttatgaa
aacggggtataggaaactttctacacctcatgccgttcagaaaatgcaaa
tacatctgtgactttagaggctgggtaaaagatatagcatcttgaaggtc
aaccagtattttggagccctagaatcaatATTGACAAAACccaaaattct
aaatatgagaaaaagcaaaaaatcttggaattctattcctatcaccctga
gttaatagtttataacaaaaaattaacattatatataaaaaatttcgctt
aatcagcaaaaacggcaaattctgtcatttttttNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNtcaaaa
acttgattaagacgttgttaaatcaaaattgtcattttgaaaatttctaa
attttcagtttggactttgcaatatcgaaaatcttgaaatatttcttaaa
aatcataaattttacatccatcgggtcgcaAATTTAAGGGAagacacaaa
tatgttcatagtttttccccctattaccactgggcttaataatttgattt
aagctacacctccgttttgggggccccaaacctgcattttgacaaccagg
agtatactgtaaaaattttatcaaataaatttatgcccaaaaccctctaa
atcatatttcaaaactatgatcaaaattttgtattcatatcttaagtNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNaaaattttgaaaaagaacttccaggaaataaagt
agagatgttaaagtttttcatgcagcaaaaatttttgtaaaacctctttt
cctctagatttgagagtaatttcaaatttgatcgccgttttgggggccac
atactgtatataTCTTGCAAAACTCAACATGTACGGGCAAAGCTATTAAC
AATATTAAATTAAATGTATTAAACAAGGAACAGACCCAACGAACATCAAA
CACAAACAAACTGAAATttacattagaaaaatataaaagcttGAAAcatt
atgtatttttttattcaaggtACAATGCGACCTTTGTATTCCACCAGCTT
GGTACCACAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_025625XLOC_025625Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00041703-exon-sc0002977-1491911889:9119..9560TCONS_00041703-exon-sc0002977-1491911889:9119..9560Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1510915933:9119..9560TCONS_00041703-exon-sc0002977-1510915933:9119..9560Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1575043694:9119..9560TCONS_00041703-exon-sc0002977-1575043694:9119..9560Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1491911889:10023..10128TCONS_00041703-exon-sc0002977-1491911889:10023..10128Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1510915933:10023..10128TCONS_00041703-exon-sc0002977-1510915933:10023..10128Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1575043694:10023..10128TCONS_00041703-exon-sc0002977-1575043694:10023..10128Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1491911889:10296..10384TCONS_00041703-exon-sc0002977-1491911889:10296..10384Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1510915933:10296..10384TCONS_00041703-exon-sc0002977-1510915933:10296..10384Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1575043694:10296..10384TCONS_00041703-exon-sc0002977-1575043694:10296..10384Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1491911889:12560..12623TCONS_00041703-exon-sc0002977-1491911889:12560..12623Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1510915933:12560..12623TCONS_00041703-exon-sc0002977-1510915933:12560..12623Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1575043694:12560..12623TCONS_00041703-exon-sc0002977-1575043694:12560..12623Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1491911889:14638..14679TCONS_00041703-exon-sc0002977-1491911889:14638..14679Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1510915933:14638..14679TCONS_00041703-exon-sc0002977-1510915933:14638..14679Clytia hemisphaericaexon
TCONS_00041703-exon-sc0002977-1575043694:14638..14679TCONS_00041703-exon-sc0002977-1575043694:14638..14679Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0002977supercontigsc0002977:9119..14679 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.132875	0	0	0	0.56878	0	0	0	1.16057	1.08172	0	0.924502	0	0.724835	0	0.141104	0.34684	0.481533	0.249757	0.475019	0	0	0	0	0.256862	0	0	0.419063	0.767484	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00041703 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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