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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00041694 ID=TCONS_00041694|Name=TCONS_00041694|organism=Clytia hemisphaerica|type=transcript|length=813bp
ATNTGTTTTTTTGTGATTACTAATAACGTTAGATATCACACCTTTCTTGA
TAGGAGAGGTTAAATTTTGAATAATGTTTTCAAGATTTGCTGACTTTCTT
TGGGTTTGCTTACGTACACTCCAAGACTTATCTTTCACTTCATTGTACCT
TGACGATAATGGAGTTGAATTTATCGACAGTAGGTCTAAATCTTGGATGA
CAGTTTCAGTGTTGCCAGGAActatttgatcattttcagtCTCGATAACA
TCAACATTAGCATCAACAACATCAACGTTGCTTATTTCAAGGGTATTACT
AATCAGACTTTCTGGACTTTCAACGTGAAAGTTCAATGAAGGGCATGGTG
ATTCTAACTCCTCTGGAAAAGTTGGGACAAAGTCTTCGCAAAGATTTTTA
TGAAGGTTGAATTGATCTATTCTTCTAAACATTTTTCCACAGTTTGGACA
GATTTTTTCACTGTCAGATGTATGTTTCTTCATGTGTTTAACAAGGCGAC
ATTTGTATTCAAAAGTCTGCGCACATAAATCACATGCATATATTTGAGCC
TTTTTTGGGTTACAGTTGTTAACATGGCGACTcatgtttggttgatgttt
agTCCTTTTAAAACACGTGTTACAAACATAATGACCATCTGAAAAAGTGT
ACTTCTTAACTTTAGCAATAGGCCTTTCGTGATTGCATTTTCTTAGATGG
CGCTTGAGCTGCATTCGCCATTTAAACTTTTCTGTACAGCCAGTATTTGT
GCATTGAATCTCATTGAGGTCTTTGTTGCGGtcttttttgtctgaaaaag
cAAGCAAAGAaac Run BLAST on NCBI protein sequence of TCONS_00041694-protein >TCONS_00041694-protein ID=TCONS_00041694-protein|Name=TCONS_00041694-protein|organism=Clytia hemisphaerica|type=polypeptide|length=271bp
VSLLAFSDKKDRNKDLNEIQCTNTGCTEKFKWRMQLKRHLRKCNHERPIA
KVKKYTFSDGHYVCNTCFKRTKHQPNMSRHVNNCNPKKAQIYACDLCAQT
FEYKCRLVKHMKKHTSDSEKICPNCGKMFRRIDQFNLHKNLCEDFVPTFP
EELESPCPSLNFHVESPESLISNTLEISNVDVVDANVDVIETENDQIVPG
NTETVIQDLDLLSINSTPLSSRYNEVKDKSWSVRKQTQRKSANLENIIQN
LTSPIKKGVISNVISNHKKTX Run BLAST on NCBI transcript from alignment at sc0002973:9235..10047 Legend: exonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00041694 ID=TCONS_00041694|Name=TCONS_00041694|organism=Clytia hemisphaerica|type=transcript|length=813bp|location=Sequence derived from alignment at sc0002973:9235..10047 (Clytia hemisphaerica)
gttTCTTTGCTTgctttttcagacaaaaaagaCCGCAACAAAGACCTCAA
TGAGATTCAATGCACAAATACTGGCTGTACAGAAAAGTTTAAATGGCGAA
TGCAGCTCAAGCGCCATCTAAGAAAATGCAATCACGAAAGGCCTATTGCT
AAAGTTAAGAAGTACACTTTTTCAGATGGTCATTATGTTTGTAACACGTG
TTTTAAAAGGActaaacatcaaccaaacatgAGTCGCCATGTTAACAACT
GTAACCCAAAAAAGGCTCAAATATATGCATGTGATTTATGTGCGCAGACT
TTTGAATACAAATGTCGCCTTGTTAAACACATGAAGAAACATACATCTGA
CAGTGAAAAAATCTGTCCAAACTGTGGAAAAATGTTTAGAAGAATAGATC
AATTCAACCTTCATAAAAATCTTTGCGAAGACTTTGTCCCAACTTTTCCA
GAGGAGTTAGAATCACCATGCCCTTCATTGAACTTTCACGTTGAAAGTCC
AGAAAGTCTGATTAGTAATACCCTTGAAATAAGCAACGTTGATGTTGTTG
ATGCTAATGTTGATGTTATCGAGactgaaaatgatcaaatagTTCCTGGC
AACACTGAAACTGTCATCCAAGATTTAGACCTACTGTCGATAAATTCAAC
TCCATTATCGTCAAGGTACAATGAAGTGAAAGATAAGTCTTGGAGTGTAC
GTAAGCAAACCCAAAGAAAGTCAGCAAATCTTGAAAACATTATTCAAAAT
TTAACCTCTCCTATCAAGAAAGGTGTGATATCTAACGTTATTAGTAATCA
CAAAAAAACANAT Coding sequence (CDS) from alignment at sc0002973:9235..10047 >TCONS_00041694 ID=TCONS_00041694|Name=TCONS_00041694|organism=Clytia hemisphaerica|type=CDS|length=813bp|location=Sequence derived from alignment at sc0002973:9235..10047 (Clytia hemisphaerica)
gttTCTTTGCTTgctttttcagacaaaaaagaCCGCAACAAAGACCTCAA
TGAGATTCAATGCACAAATACTGGCTGTACAGAAAAGTTTAAATGGCGAA
TGCAGCTCAAGCGCCATCTAAGAAAATGCAATCACGAAAGGCCTATTGCT
AAAGTTAAGAAGTACACTTTTTCAGATGGTCATTATGTTTGTAACACGTG
TTTTAAAAGGActaaacatcaaccaaacatgAGTCGCCATGTTAACAACT
GTAACCCAAAAAAGGCTCAAATATATGCATGTGATTTATGTGCGCAGACT
TTTGAATACAAATGTCGCCTTGTTAAACACATGAAGAAACATACATCTGA
CAGTGAAAAAATCTGTCCAAACTGTGGAAAAATGTTTAGAAGAATAGATC
AATTCAACCTTCATAAAAATCTTTGCGAAGACTTTGTCCCAACTTTTCCA
GAGGAGTTAGAATCACCATGCCCTTCATTGAACTTTCACGTTGAAAGTCC
AGAAAGTCTGATTAGTAATACCCTTGAAATAAGCAACGTTGATGTTGTTG
ATGCTAATGTTGATGTTATCGAGactgaaaatgatcaaatagTTCCTGGC
AACACTGAAACTGTCATCCAAGATTTAGACCTACTGTCGATAAATTCAAC
TCCATTATCGTCAAGGTACAATGAAGTGAAAGATAAGTCTTGGAGTGTAC
GTAAGCAAACCCAAAGAAAGTCAGCAAATCTTGAAAACATTATTCAAAAT
TTAACCTCTCCTATCAAGAAAGGTGTGATATCTAACGTTATTAGTAATCA
CAAAAAAACANAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00041694-exon-sc0002973-1491911889:9235..10047 | TCONS_00041694-exon-sc0002973-1491911889:9235..10047 | Clytia hemisphaerica | exon |
| TCONS_00041694-exon-sc0002973-1510915933:9235..10047 | TCONS_00041694-exon-sc0002973-1510915933:9235..10047 | Clytia hemisphaerica | exon |
| TCONS_00041694-exon-sc0002973-1575043694:9235..10047 | TCONS_00041694-exon-sc0002973-1575043694:9235..10047 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0002973 | supercontig | sc0002973:9235..10047 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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